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NEXT_TASKS: record syntrophy/DIET causal batch (#251) #252

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realmarcin merged 1 commit into from
Jul 22, 2026
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NEXT_TASKS: record syntrophy/DIET causal batch (#251) #252

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10 changes: 8 additions & 2 deletions NEXT_TASKS.md
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Expand Up @@ -348,8 +348,14 @@ CommunityMech:000268, reversible magnetite-"battery" loop 2⇄3 + both half-reac
battery, PMID:25814583), `ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model` (#249;
CommunityMech:000176 — conservative: full text unretrievable, so 2 directly-implied
donor→partner edges + a KNOWLEDGE_GAP discussion, modeled-limitation node left isolated).
~61/304 records now carry `downstream` causal edges. **Next:** continue on high-value
syntrophies; always use the RECORD's canonical taxon ids (Edison groundings have had
**Syntrophy/DIET batch (#251):** `Dehalococcoides_Syntrophomonas_TCE_Dechlorination_Coculture`
(000183, 2 edges), `Trichococcus_Syntrophomonas_Methanospirillum_Butyrate_Coculture`
(000188, 2 HYPOTHESIZED mediator edges + KG), `Syntrophomonas_Methanococcus_Butyrate_Growth_Coordination_Coculture`
(000189, 1 edge + KG), `DIETsimp_Lignocellulose_to_Methane_DIET_Consortia` (000297, NO edge
justified — parallel proposed DIET pathways — KG only). The 6 already-wired matches
(000031–033 DIET, 000068–070 syntrophies) were left as-is. ~65/304 records now carry
`downstream` causal edges. **Next:** continue on high-value syntrophies; always use the
RECORD's canonical taxon ids (Edison groundings have had
errors, e.g. sulfite → CHEBI:16731 *(E)-cinnamaldehyde* instead of CHEBI:17359). NB: when
the primary full text isn't retrievable, keep edges to abstract-supported/directly-implied
claims and file the rest as a KNOWLEDGE_GAP (000176 is the worked example).
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