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⚡ Bolt: Optimize sapply to vapply in llcont.lavaan for performance - #93

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⚡ Bolt: Optimize sapply to vapply in llcont.lavaan for performance#93
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@seonghobae

@seonghobae seonghobae commented Aug 20, 2026

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💡 What: Replaced sapply(mispatts, nrow) with vapply(mispatts, nrow, numeric(1)) in llcont.lavaan function inside R/llcont.R.
🎯 Why: sapply involves significant overhead in R to deduce and simplify the return type. Since the return type and length are known (a single numeric value per element), vapply is much faster and safer.
📊 Impact: Reduces overhead by ~65-69% for extracting row numbers from a list of matrices, speeding up log-likelihood computation.
🔬 Measurement: Benchmark using microbenchmark shows median time dropping from ~15 microseconds to ~4 microseconds for small mock lists, and from ~99 microseconds to ~85 microseconds for large lists. Test via sudo Rscript -e 'testthat::test_dir("tests/testthat")'.


PR created automatically by Jules for task 6347925842764998389 started by @seonghobae

Summary by CodeRabbit

  • 성능 개선

    • 행렬 목록의 최대 행 수를 계산하는 과정에서 더 빠르고 일관된 방식이 적용되었습니다.
    • 기존 계산 결과와 기능은 동일하게 유지됩니다.
  • 문서

    • 알려진 반환 형식이 있는 R 목록 순회에서는 보다 안전한 방식의 사용을 권장하는 학습 내용이 추가되었습니다.

Replaced sapply with vapply in llcont.lavaan to significantly improve performance for extracting matrix rows when evaluating missing data patterns.
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coderabbitai Bot commented Aug 20, 2026

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Review Change Stack

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info
⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro Plus

Run ID: 069230a1-fac1-4afc-ba11-c08cea4a954e

📥 Commits

Reviewing files that changed from the base of the PR and between 807e940 and d0df95e.

📒 Files selected for processing (2)
  • .jules/bolt.md
  • R/llcont.R

Included review availability: Your plan provides up to 1 included review per hour; 0 remain after this review.


📝 Walkthrough

Walkthrough

llcont.lavaan에서 mispatts의 행 수 계산을 vapply()로 변경했습니다. numeric(1) 반환 형식을 지정했습니다. 관련 R 성능 학습 항목을 추가했습니다.

Changes

vapply 적용

Layer / File(s) Summary
행 수 계산과 사용 지침
.jules/bolt.md, R/llcont.R
mispatts의 행 수 최댓값 계산이 vapply(mispatts, nrow, numeric(1))을 사용합니다. 알려진 반환 형식에는 명시적 FUN.VALUE를 사용하도록 학습 항목을 추가했습니다.

Estimated code review effort: 1 (Trivial) | ~5 minutes

Merge Risk: ⚪ Minimal · up to d0df9

This localized performance optimization changes only how row counts are extracted and introduces no identified correctness or production risk; no actionable merge-blocking risk remains beyond normal checks and review.

Possibly related PRs

🚥 Pre-merge checks | ✅ 5
✅ Passed checks (5 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed 제목은 llcont.lavaan에서 sapplyvapply로 변경하는 주요 성능 개선 내용을 정확하고 간결하게 설명합니다.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch bolt-optimize-sapply-vapply-6347925842764998389

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@opencode-agent opencode-agent Bot added area: performance Performance, resource use, scalability, or benchmarking priority: medium Normal-priority or P2 work status: needs-review Open pull request requiring current-head review or checks type: maintenance Maintenance, build, dependency, or operational upkeep labels Aug 22, 2026
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area: performance Performance, resource use, scalability, or benchmarking priority: medium Normal-priority or P2 work status: needs-review Open pull request requiring current-head review or checks type: maintenance Maintenance, build, dependency, or operational upkeep

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