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Deconvolver hyperparameter tuning
EDAExploratory Data AnalysisExploratory Data AnalysisModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.#124 In CompEpigen/syto;Add HyenaDNA model to the zoo of models
CoreCore development scope to enable models creation and useCore development scope to enable models creation and useModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.TECH DEBT: Add different instructions to poetry depending on the system (Torch with CUDA or without CUDA)
AuxiliaryAdditional functionallity for easying users and developers livesAdditional functionallity for easying users and developers livesDevOpsDevOps and MLOps work like setting app GitHub, configuring GitHub actions, Setting MLFlow Server ...DevOps and MLOps work like setting app GitHub, configuring GitHub actions, Setting MLFlow Server ...Status: Open.#42 In CompEpigen/syto;Investigate if reducing embeeding size for small vocabulary will preserve representational power
LearningIncludes Research with Trial and Error active tasks aimed on learning frameworks, models, approachesIncludes Research with Trial and Error active tasks aimed on learning frameworks, models, approachesStatus: Open.#41 In CompEpigen/syto;Probabilistic Methylation - Caduceus
ModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.Probabilistic Methylation - HyenaDNA
ModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.- Status: Open.
Probabilistic Methylation - Dismir
ModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.Investigate minGRU speed up from original paper
LearningIncludes Research with Trial and Error active tasks aimed on learning frameworks, models, approachesIncludes Research with Trial and Error active tasks aimed on learning frameworks, models, approachesStatus: Open.#34 In CompEpigen/syto;Add methylation probabilities to the data output
CoreCore development scope to enable models creation and useCore development scope to enable models creation and useModellingWork related to design, training and fine-tuning the modelsWork related to design, training and fine-tuning the modelsStatus: Open.Add Caduceus (biMamba) model to the zoo of models
CoreCore development scope to enable models creation and useCore development scope to enable models creation and useStatus: Open.