fix(core): audit hardening, graph layer visibility, and api concurrency (v1.0.1) by engkinandatama · Pull Request #24 · CORE-Lab-Research/biocontext

engkinandatama · 2026-10-10T08:19:07Z

Comprehensive audit hardening for v1.0.1:

Fix CLI & Docker serve sub-command alias
Fix GO functional annotation layer in KnowledgeGraphBuilder and report layer_status
Resolve REST API concurrency lock using ThreadingHTTPServer with dedicated asyncio event loop thread
Remove fabricated 1.0 confidence/edge weights; treat unscored edges neutrally
Prevent publication node contamination in traversal; filter by exact ID/whole-word phrase
Add 35 offline robustness tests with labeled synthetic doubles
Configure CI rerun logic for external network resilience

…ity for v1.0.1

fix(core): harden graph traversal, api concurrency, and layer visibil…

17e33f4

…ity for v1.0.1

engkinandatama merged commit 17e33f4 into CORE-Lab-Research:main Oct 10, 2026
4 checks passed

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