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feat(graph): implement Knowledge Graph data model, in-memory store, builder, and MCP tool (v0.8.0) - #21
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engkinandatama merged 1 commit intoOct 10, 2026
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…uilder, and MCP tool (v0.8.0)
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Summary of Changes
biocontext.graph.models): Added 7 node types (GENE,PROTEIN,TRANSCRIPT,PATHWAY,DISEASE,PUBLICATION,GO_TERM) and directed biological edges with provenance attribution.biocontext.graph.store): LightweightInMemoryGraphStorefor deterministic neighbor lookups and sub-graph extraction.biocontext.graph.builder): Connects all resolvers (HGNC, UniProt, Ensembl, QuickGO, Reactome, Open Targets, Europe PMC) into unified subgraphs.build_entity_subgraphtool toserver.pyandbiocontext graph <query>to CLI.tests/test_graph.py(100% passing).0.8.0.