GitHub - BowenLab/Binder_design: Code for binder design

Here are some scripts related to binder design. This suite of scripts includes commonly‑used tools for Binder hydrophobicity calculation, inter‑chain clash evaluation, and AlphaFold3 JSON file conversion.

Name		Name	Last commit message	Last commit date
Binder_Surface_Hydrophobicity_SASAweighted.py		Binder_Surface_Hydrophobicity_SASAweighted.py
LICENSE		LICENSE
README.md		README.md
SASA-hydrophic-Hbond.py		SASA-hydrophic-Hbond.py
alphafold-merge_score.py		alphafold-merge_score.py
clash_final_biopython.py		clash_final_biopython.py
extract-iptm.py		extract-iptm.py
findcif.py		findcif.py
get_iptm-optimized.py		get_iptm-optimized.py
get_iptm.py		get_iptm.py
get_seq_cif.py		get_seq_cif.py
get_seq_longxing.py		get_seq_longxing.py
merge_summary.py		merge_summary.py
mpnn-new_ly.py		mpnn-new_ly.py
mvv.py		mvv.py
order.py		order.py
pymol_align_batch.py		pymol_align_batch.py
pymol_del.py		pymol_del.py
renumber.py		renumber.py
replace.py		replace.py
swap_chains.py		swap_chains.py
trans-Chis-alpha3-json-Buntemplate.py		trans-Chis-alpha3-json-Buntemplate.py
trans-Chis-alpha3-json.py		trans-Chis-alpha3-json.py
trans-alpha3-json.py		trans-alpha3-json.py
trans-json-Nhis-Mdel.py		trans-json-Nhis-Mdel.py
trans-json-Nhis-MrA.py		trans-json-Nhis-MrA.py
trans-json-b.py		trans-json-b.py
trans-json-nhis.py		trans-json-nhis.py
trans-json.py		trans-json.py

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