v11.6b - with updated scripts

MakeGraph - faster and easier to run

cat makeGraph2.0.R | R --slave --args <*_ratio.txt> [<*_BAF.txt>]

Control-FREEC v11.6

Some bugs corrected (see commits)

Control-FREEC v11.5

Bug fixed: reading .fai file for non-human genomes

v11.4 - fix Seg Fault for exome-seq without GC-correction

v11.4 - fix Seg Fault for exome-seq without GC-correction

FREEC v11.3

Better fit for Read Count ~ GC-content profile

FREEC v11.0

Added a mistake-proofing against different values of step parameter in the config file and other user-provided files

FREEC v10.9

Fixed a bug that missed lots of SNPs for the correct evaluation of BAF.

Control-FREEC v10.8 - minimalCoveragePerPosition bug corrected

Until v10.8, FREEC cound not use external parameter "minimalCoveragePerPosition"

FREEC v10.6

Can run Control-FREEC on exome-seq data without control;
A serous bug affecting fitting of BAF values has been fixed;
miniPileup option has been added to the [sample]/[control] group of parameters to speed up the execution tima.

Control-FREEC v10.5 - automatically check for sorted BED for exome-seq

Merge branch 'master' of https://github.com/BoevaLab/FREEC