The Bioinformatics Team is dedicated to advancing rice research through the application of computational biology, data analysis, and genomic technologies.
We offer a suite of cutting-edge bioinformatics services designed to support breeding programs and research focused on improving rice varieties for higher yield, disease resistance, and climate resilience. Our expertise lies in the analysis of large-scale genomic and phenotypic data through the following service packages:
- Variant Calling
- High-Throughput Phenotyping (HTP) Analysis
- Genome-Wide Association Studies (GWAS)
- Post-GWAS Analysis
- Custom Omics Integration
Join us as we innovate and collaborate in the world of rice research and breeding!
Here are some of the key bioinformatics tools created and maintained by the Bioinformatics Team, organized by type or similar projects:
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Bioinformatics Portal: Providing a central hub for bioinformatics tools and resources.
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Crop Galaxy: A data-intensive platform designed for bioinformatics workflows.
- SNPseek: SNPseek: Online Database for SNP Analysis and Genomic Data Integration.
- Web Application. Repository | Manual
- Datasource Repository
- Genotype Loader (in progress of migration)
- Dockerized Version Packages - Dockerized Local Version (with Subset of Database)
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BRS-utilitiesPublic: A set of tools for data format conversion, transformation, and other carpentries in bioinformatics.
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BRS_CropGalaxyPublic: A combination of tools related to CropGalaxy with additional support for rice breeding and genomic studies.
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PlinkServerFEPrivate: Front-end tool for managing data on the PlinkServe platform, focused on user interaction and data visualization.
- PhenoPredictMLPrivate: A machine learning-based tool to predict phenotypic traits from genomic and environmental data.
- Basic Bioinformatics Course 2025: An educational resource for bioinformatics training.
For more information or collaboration inquiries, feel free to connect with us!