Physarum imaging and estop - #2

Merged

qquais merged 42 commits into

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physarum-imaging-and-estop

Sep 30, 2026

Commits on Sep 23, 2026

Capture illumination in optical config; add Ti2 inventory/config tools
qquais
committed
7121a26
Fix Bayer decode order and report camera white-balance mode
qquais
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d02e178
Add a file-based emergency stop enforced inside every motion primitive
qquais
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9fe791f
Add an always-on-top STOP panel and expose the e-stop over MCP
qquais
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fb1cb3a
Add move_xy: manual XY stage moves split into legal hops
qquais
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0fe4b79
Add Ti2 stage probe scripts for halt and read-during-move behaviour
qquais
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55f15c0
Add fixed-position brightfield time-lapse acquisition
qquais
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73b44f1
Add tiled mosaic acquisition with stitching and focus-plane support
qquais
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e4f9d8e
Add Physarum contraction-rhythm analysis for time-lapse series
qquais
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e612905
Add make_movie: render a time-lapse series to MP4
qquais
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dd669d4
Add live_view: browser preview of a running acquisition's files
qquais
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1de814c
Remove duplicated TODO fragment from nudge_pfs_offset docstring
qquais
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01e81b8
Keep Nikon Ti2 SDK documentation out of the repository
qquais
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6021c3a
make_movie: render mosaic runs, one frame per stitched round
qquais
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f190ea8
Add oat_approach: measure plasmodium approach to food across mosaic rounds
qquais
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725c268

Commits on Sep 25, 2026

Commits on Sep 28, 2026

Commits on Sep 30, 2026