Experiment/compare performance#12
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BenjaminIsaac0111
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Jun 28, 2026
BenjaminIsaac0111
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- Implemented the first version of the experimental run scripts for HPC. Not that I have a HPC...
Introduces scheduler integration to scripts/compare_models.py to allow running baseline and SpatialTranscriptFormer model training in parallel on Slurm HPC clusters. - Add --slurm execution mode to generate Slurm scripts with POSIX-compatible paths - Add --submit option to submit via sbatch and register collection dependency - Add --collect-only mode to aggregate reports/plots directly from outputs - Add Slurm resource customisation CLI flags - Use dynamic SLURM_SUBMIT_DIR directory to prevent hardcoded Windows paths
- Applied consistent line breaks in multi-line function calls. - Aligned and formatted CLI argument definitions for clarity. - Standardised string formatting with proper quotation mark usage. - Enhanced indentation for better structure and readability. Signed-off-by: BenjaminIsaac0111 <12176376+BenjaminIsaac0111@users.noreply.github.com>
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