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Assay selection and Custom Upload update - #17

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sabila-bernard wants to merge 6 commits into
AyadLab:mainfrom
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sabila-bernard wants to merge 6 commits into
AyadLab:mainfrom
sabila-bernard:main

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@sabila-bernard

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sabila-bernard and others added 6 commits May 19, 2026 13:26
…779211580768

Add claude GitHub actions 1779211580768
Features:
- Select and use a specific assay after uploading Seurat data
- Upload a custom drug signature matrix (Custom Upload option)
- Upload a pre-calculated Cell-Drug Connectivity correlation matrix

Bug fixes:
- corrMat double-transpose removed so drug names appear in dropdown
- referenceCompound_ui now evaluates inside hidden conditionalPanel
- assay_to_use() guarded against pre-upload navigation crash
- Gene name case normalised so lowercase uploads don't silently fail
- seq_len() replaces 1:length() in combination analysis loops
@sabila-bernard

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Superseded by #18 — same changes without CI workflow files.

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