This package implements phylogenetic path analysis in R.
Install the package using:
install.packages("BiocManager")
BiocManager::install("phylopath")
phylopath relies on ggm, which in turn needs graph from Bioconductor. BiocManager::install() installs from CRAN as well as Bioconductor, so this single command obtains all three. A plain install.packages("phylopath") works only if you already have graph.
Or if you'd like to install the development version (here on github), use:
remotes::install_github("Ax3man/phylopath")
It's easiest to start on the website and first read the introduction here, or read the paper in PeerJ.
If you find any problems, or if you have suggestions for improvements, please file those under issues. PRs welcome.