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31 changes: 28 additions & 3 deletions src/Storages/ObjectStorage/DataLakes/Iceberg/Mutations.cpp
Original file line number Diff line number Diff line change
@@ -1,7 +1,10 @@
#include <Columns/ColumnLowCardinality.h>
#include <Columns/ColumnNullable.h>
#include <Columns/ColumnString.h>
#include <Core/ColumnsWithTypeAndName.h>
#include <Core/Settings.h>
#include <DataTypes/DataTypeLowCardinality.h>
#include <DataTypes/DataTypeNullable.h>
#include <DataTypes/DataTypeString.h>
#include <DataTypes/DataTypesNumber.h>
#include <Databases/DataLake/Common.h>
Expand Down Expand Up @@ -99,7 +102,7 @@ static Block getPositionDeleteFileSampleBlock()
return Block(delete_file_columns_desc);
}

static Block getNonVirtualColumns(const Block & block)
static Block getNonVirtualColumns(const Block & block, bool remove_low_cardinality = false)
{
auto virtual_columns_desc = VirtualColumnUtils::getVirtualNamesForFileLikeStorage();
std::unordered_set<String> virtual_columns;
Expand All @@ -110,7 +113,14 @@ static Block getNonVirtualColumns(const Block & block)
{
if (virtual_columns.contains(block.getNames()[i]))
continue;
columns.push_back(ColumnWithTypeAndName(block.getColumns()[i], block.getDataTypes()[i], block.getNames()[i]));
auto col_type = block.getDataTypes()[i];
auto col_data = block.getColumns()[i];
if (remove_low_cardinality)
{
col_type = removeLowCardinality(col_type);
col_data = col_data->convertToFullColumnIfLowCardinality();
}
columns.push_back(ColumnWithTypeAndName(col_data, col_type, block.getNames()[i]));
}
return Block(columns);
}
Expand Down Expand Up @@ -171,6 +181,9 @@ static std::optional<WriteDataFilesResult> writeDataFiles(
bool has_any_rows = false;
while (executor.pull(block))
{
if (block.rows() == 0)
continue;

has_any_rows = true;
Chunk chunk(block.getColumns(), block.rows());
auto partition_result = getPartitionedChunks(chunk, chunk_partitioner);
Expand Down Expand Up @@ -215,12 +228,19 @@ static std::optional<WriteDataFilesResult> writeDataFiles(
col_data_filename.column = partition_chunk.getColumns()[col_data_filename_index];
col_position.column = partition_chunk.getColumns()[col_position_index];

/// The virtual column `_iceberg_metadata_file_path` may arrive as
/// LowCardinality(String) from the pipeline, but the position delete
/// file format expects plain String. Unwrap it.
col_data_filename.column = col_data_filename.column->convertToFullColumnIfLowCardinality();
col_data_filename.type = removeLowCardinality(col_data_filename.type);

if (const ColumnNullable * nullable = typeid_cast<const ColumnNullable *>(col_position.column.get()))
{
const auto & null_map = nullable->getNullMapData();
if (std::any_of(null_map.begin(), null_map.end(), [](UInt8 x) { return x != 0; }))
throw Exception(ErrorCodes::LOGICAL_ERROR, "Unexpected null _row_number");
col_position.column = nullable->getNestedColumnPtr();
col_position.type = removeNullable(col_position.type);
}

auto col_data_filename_without_namespaces = ColumnString::create();
Expand Down Expand Up @@ -277,7 +297,12 @@ static std::optional<WriteDataFilesResult> writeDataFiles(
Block block;
while (executor.pull(block))
{
auto data_block = getNonVirtualColumns(block);
if (block.rows() == 0)
continue;

/// Strip virtual columns and unwrap LowCardinality to ensure the
/// block types are compatible with the Avro serializer schema.
auto data_block = getNonVirtualColumns(block, /*remove_low_cardinality=*/ true);
Chunk chunk(data_block.getColumns(), data_block.rows());
auto partition_result = getPartitionedChunks(chunk, chunk_partitioner);

Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
c
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
#!/usr/bin/env bash
# Tags: no-fasttest

# Regression test for https://github.com/ClickHouse/ClickHouse/issues/100565
# Two consecutive ALTER TABLE UPDATE on a partitioned Iceberg table should not
# cause a "Logical error: 'partitions_count > 0'" exception. The second UPDATE
# reads the original data file whose rows were position-deleted by the first
# UPDATE, producing an empty block that must be skipped during partitioning.

CURDIR=$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)
# shellcheck source=../shell_config.sh
. "$CURDIR"/../shell_config.sh

TABLE="t_${CLICKHOUSE_DATABASE}_${RANDOM}"
TABLE_PATH="${USER_FILES_PATH}/${TABLE}/"

${CLICKHOUSE_CLIENT} --query "DROP TABLE IF EXISTS ${TABLE}"
${CLICKHOUSE_CLIENT} --query "
CREATE TABLE ${TABLE} (c0 String)
ENGINE = IcebergLocal('${TABLE_PATH}', 'Parquet')
PARTITION BY (c0)
"

${CLICKHOUSE_CLIENT} --allow_insert_into_iceberg=1 --query "INSERT INTO ${TABLE} VALUES ('a')"

${CLICKHOUSE_CLIENT} --allow_insert_into_iceberg=1 --query "ALTER TABLE ${TABLE} UPDATE c0 = 'b' WHERE TRUE"

# This second UPDATE previously triggered: Logical error: 'partitions_count > 0'
${CLICKHOUSE_CLIENT} --allow_insert_into_iceberg=1 --query "ALTER TABLE ${TABLE} UPDATE c0 = 'c' WHERE TRUE"

${CLICKHOUSE_CLIENT} --query "SELECT c0 FROM ${TABLE}"

${CLICKHOUSE_CLIENT} --query "DROP TABLE IF EXISTS ${TABLE}"
rm -rf "${TABLE_PATH}"
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
2
3
10
OK
42 changes: 42 additions & 0 deletions tests/queries/0_stateless/04092_iceberg_update_low_cardinality.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
#!/usr/bin/env bash
# Tags: no-fasttest

CURDIR=$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)
# shellcheck source=../shell_config.sh
. "$CURDIR"/../shell_config.sh

ICEBERG_TABLE_PATH="${CLICKHOUSE_USER_FILES}/lakehouses/${CLICKHOUSE_DATABASE}_t0"

# Cleanup
rm -rf "${ICEBERG_TABLE_PATH}"

# Test 1: ALTER UPDATE on IcebergLocal with default (Parquet) format.
# The position delete file writer used to crash because `_iceberg_metadata_file_path`
# arrives as LowCardinality(String) from the pipeline, but the Avro/Parquet serializer
# expected plain String.
${CLICKHOUSE_CLIENT} --query "
SET allow_experimental_insert_into_iceberg = 1;
CREATE TABLE t0 (c0 Int) ENGINE = IcebergLocal('${ICEBERG_TABLE_PATH}');
INSERT INTO t0 VALUES (1), (2), (3);
ALTER TABLE t0 UPDATE c0 = 10 WHERE c0 = 1;
SELECT c0 FROM t0 ORDER BY c0;
"

# Cleanup
${CLICKHOUSE_CLIENT} --query "DROP TABLE IF EXISTS t0"
rm -rf "${ICEBERG_TABLE_PATH}"

# Test 2: ALTER UPDATE on IcebergLocal with Avro format.
# This was the exact reproduction case from the issue.
${CLICKHOUSE_CLIENT} --query "
SET allow_experimental_insert_into_iceberg = 1;
CREATE TABLE t0 (c0 Int) ENGINE = IcebergLocal('${ICEBERG_TABLE_PATH}', 'Avro');
INSERT INTO t0 VALUES (1);
ALTER TABLE t0 UPDATE c0 = 1 WHERE TRUE;
"

echo "OK"

# Cleanup
${CLICKHOUSE_CLIENT} --query "DROP TABLE IF EXISTS t0"
rm -rf "${ICEBERG_TABLE_PATH}"
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