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Refactor encoder output #739

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Refactor encoder output #739

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6d570d5
feat: updated conv blocks, cnn output layer
Jul 21, 2026
8c31404
minor upd
Jul 22, 2026
0fc67c8
refactor: added doc back, rm test printout
Jul 22, 2026
0738122
feat: dropout added
Jul 22, 2026
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9 changes: 7 additions & 2 deletions src/neuron_proofreader/merge_proofreading/merge_datamodules.py
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Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@ def set_giant_components(self):
def __getitem__(self, idx):
node, label = self.get_site(idx)
subgraph = self.rooted_subgraph(node, self.subgraph_depth)
patches = self.patch_loader(node)
_, patches = self.patch_loader(node)
return patches, subgraph, label

def get_site(self, idx):
Expand All @@ -162,8 +162,12 @@ def get_site(self, idx):
return self.get_random_nonmerge_site()

def get_random_nonmerge_site(self):
# Set sample space
use_br = np.random.random() < self.random_branching_site_probability
nodes = self.branching_nodes() if use_br else self.nodes
nodes = nodes or self.nodes

# Sample node
n_attempts = 0
while True:
# Sample node
Expand Down Expand Up @@ -648,7 +652,8 @@ def create_dataset_collection(
if dataset_mode == "Val":
num_target_neg = val_neg_multiplier * len(dataset.merge_sites)
num_added_neg = num_target_neg - len(dataset.nonmerge_sites)
dataset.add_nonmerge_sites(num_added_neg)
if num_added_neg > 0:
dataset.add_nonmerge_sites(num_added_neg)

# Add dataset to collection
datasets.append(dataset)
Expand Down
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