Fix JAX PEtab condition-table resolution: state reinit, noise distribution, and differentiability - #3207

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FFroehlich merged 9 commits into

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fix/jax-petab-reinit-noise-dist

Jul 10, 2026

Commits on Jul 9, 2026

Fix CI failures in JAX PEtab v1/v2 backend

FFroehlich
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claude
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db00ced
Ignore another benign petab1to2 warning-turned-error

FFroehlich
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claude
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4646543
Fix state reinitialisation lookup and petab1to2 noise-distribution bug in JAX PEtab backend

FFroehlich
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claude
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89e7b09
Resolve JAX PEtab reinitialisation values live so gradients flow

FFroehlich
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claude
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b42de7b
Resolve condition-table parameter overrides live too

FFroehlich
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claude
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5411a21
Apply suggestions from code review

FFroehlich
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Copilot
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826d605
Drop petab1to2 noise-distribution workaround; rely on upstream fix

FFroehlich
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claude
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bf387b3
Revert unnecessary _petab_import.py changes

FFroehlich
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claude
committed
72bd865

Commits on Jul 10, 2026

Fix _build_simulation_df_v2: consistent masking, drop fragile sc[0] lookup

FFroehlich
and
claude
committed
ab21bf9