Add MOM6 mini-app section for GPU work

[chrisb13]

Added a section for a MOM6 mini-app for GPU work, including presenter details and a link.

@JorgeG94. Here's a placeholder if you'd like to add some notes for your presentation, please do!

[chrisb13]

FYI @JorgeG94. You can view a rendered version of this doc here:
https://decoding-access-om3--24.org.readthedocs.build/season2/#navigating-mom6-as-a-non-oceanographer-a-mom6-mini-app-for-gpu-work

It will update as you commit to this branch. You can also run mkdoc offline if you prefer. More details on this last idea here

I've sent you an invite such that you should now have write access to this repo'.

[chrisb13]

fyi @JorgeG94 had to do a force push as I've re-structured the docs and needed to re-base. Just letting you know in case you've been playing with this offline.

[chrisb13]

@JorgeG94, fyi, I've added a link to the schedule where your notes will be after merging this (here)

Ed will likely use this on the announce post (example) tomorrow or thursday.

The assumption is that this will be merged before the presentation on Thursday.

[chrisb13]

@JorgeG94 thanks for getting back to this. I've had a quick skim of the draft and whilst it's up to you, my own feeling, given the very short amount of time (~8 minutes!), is that the session would be better to focus on how you took the mom6 codebase and converted into JorgeG94/hackathon_mom6_miniapp. This is relevant to the audience because we are about to start going through the mom6 routines and numerics in "decoding-om3" in more detail...

14/05/2026	Fortran 101 (Edward Yang)
21/05/2026	Navier Stokes -> stacked shallow water (adiabatic). (Andrew Kiss)
11/06/2026	Generalised vertical coordinates (Andy)
18/06/2026	Vertical Lagrangian remapping (Angus)
25/06/2026	Presure Forces (Claire)
02/07/2026	Coriolis (Chris)

Looking at the table of contents on the right, you can see the extended planned program for "season 2" here.

As a suggestion, what I'm imagining here is:

• looking at the mom6 dynamical core file list;
• then talking us through this and this and showing us a mapping between.

As in, explaining how you came to understand what to keep and what could be removed and what was needed for it to initialize and run. Along the way, you can mention all the fun anecdotes and trial by fire in learning about ocean modelling :)

I realise this was a first draft, so my apologies if you are already thinking along similar lines.

[JorgeG94]

@JorgeG94 thanks for getting back to this. I've had a quick skim of the draft and whilst it's up to you, my own feeling, given the very short amount of time (~8 minutes!), is that the session would be better to focus on how you took the mom6 codebase and converted into JorgeG94/hackathon_mom6_miniapp. This is relevant to the audience because we are about to start going through the mom6 routines and numerics in "decoding-om3" in more detail...
14/05/2026 Fortran 101 (Edward Yang)
21/05/2026 Navier Stokes -> stacked shallow water (adiabatic). (Andrew Kiss)
11/06/2026 Generalised vertical coordinates (Andy)
18/06/2026 Vertical Lagrangian remapping (Angus)
25/06/2026 Presure Forces (Claire)
02/07/2026 Coriolis (Chris)

Looking at the table of contents on the right, you can see the extended planned program for "season 2" here.

As a suggestion, what I'm imagining here is:

* looking at the [mom6 dynamical core](https://github.com/ACCESS-NRI/MOM6/tree/2026.01/src/core) file list;

* then talking us through [this](https://github.com/JorgeG94/hackathon_mom6_miniapp#relationship-to-mom6) and [this](https://github.com/JorgeG94/hackathon_mom6_miniapp#relationship-to-mom6) and showing us a mapping between.

As in, explaining how you came to understand what to keep and what could be removed and what was needed for it to initialize and run. Along the way, you can mention all the fun anecdotes and trial by fire in learning about ocean modelling :)

I realise this was a first draft, so my apologies if you are already thinking along similar lines.

Yeah I was going to start changing it it was mostly my ideas I had in my brain so very much first draft.

[chrisb13]

@JorgeG94, wondering if you've had a chance to review this or are you okay to merge? Need any input? @edoyango has written some notes for this week and if possible, it would be great if we had your notes in before then.

[JorgeG94]

fixed typos, ready to merge

[chrisb13]

Thanks @JorgeG94!