Standardized report input format

[dan-knight]

CEV

SRCGrob

tree.df

node.label	clone.id	parent	CP*	lengthn*

text.df

Heatmaps

sample.id	snv.id	clone.id	CCF

SMC-Het

All files are tab separated with no headers. examples here

1A - Purity Estimation

1B - Number of Subclones

1C - Number of SNVs per Clone

clone.id	# of SNV	CP

2A - Hard SNV Assignment

SNV ID encodes more information, but must be unique.

sample.id	snv.id	ccf

snv.id	clone.id

2B - Soft SNV Assignment

3A - Binary Phylogeny

parent	clone.id

3B - Probabilistic Phylogeny