From 42cd8f09e1f1abe12e9734ce13bc929ac81f2965 Mon Sep 17 00:00:00 2001
From: samypr100 <3933065+samypr100@users.noreply.github.com>
Date: Sun, 26 Jul 2026 20:35:30 -0400
Subject: [PATCH] chore: dependency updates

---
 build.gradle                             | 28 ++++++++++-----------
 gradle.properties                        |  2 +-
 gradle/wrapper/gradle-wrapper.properties |  2 +-
 pom.xml                                  | 31 ++++++++++++------------
 4 files changed, 32 insertions(+), 31 deletions(-)

diff --git a/build.gradle b/build.gradle
index c5e4ea10..983269e7 100644
--- a/build.gradle
+++ b/build.gradle
@@ -2,11 +2,11 @@ plugins {
     id 'java'
     id 'idea'
     id 'application'
-    id 'com.github.ben-manes.versions' version '0.53.0'
-    id 'net.nemerosa.versioning' version '3.1.0'
+    id 'com.github.ben-manes.versions' version '0.54.0'
+    id 'net.nemerosa.versioning' version '4.0.1'
     id 'org.openjfx.javafxplugin' version '0.1.0'
-    id 'org.gradlex.extra-java-module-info' version '1.13.1'
-    id 'org.beryx.jlink' version '3.1.4-rc'
+    id 'org.gradlex.extra-java-module-info' version '1.14.2'
+    id 'org.beryx.jlink' version '3.2.1'
 }
 
 ext {
@@ -58,23 +58,23 @@ dependencies {
     }
     implementation 'com.github.quickhull3d:quickhull3d:1.0.0'
     implementation 'org.apache.commons:commons-math3:3.6.1'
-    implementation 'org.apache.commons:commons-lang3:3.19.0'
+    implementation 'org.apache.commons:commons-lang3:3.20.0'
     implementation 'org.zeromq:jeromq:0.6.0'
-    implementation 'com.fasterxml.jackson.core:jackson-annotations:2.19.2'
-    implementation 'com.fasterxml.jackson.core:jackson-databind:2.19.2'
+    implementation 'com.fasterxml.jackson.core:jackson-annotations:2.22'
+    implementation 'com.fasterxml.jackson.core:jackson-databind:2.22.1'
     implementation 'com.github.sarxos:webcam-capture:0.3.12'
     implementation 'org.jflac:jflac-codec:1.5.2'
     implementation 'com.tambapps.fft4j:fft4j:2.0'
     implementation 'com.github.trinity-xai:SuperMDS:v2025.06.29'
-    implementation 'org.apache.pdfbox:pdfbox:3.0.6'
+    implementation 'org.apache.pdfbox:pdfbox:3.0.8'
 
     // Enforce slf4j-api version across dependencies
-    implementation 'org.slf4j:slf4j-api:2.0.17'
-    implementation 'ch.qos.logback:logback-classic:1.5.20'
+    implementation 'org.slf4j:slf4j-api:2.0.18'
+    implementation 'ch.qos.logback:logback-classic:1.5.38'
 
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.15.0'
-    testImplementation 'org.junit.platform:junit-platform-suite:1.14.0'
-    testRuntimeOnly 'org.junit.platform:junit-platform-launcher:1.14.0'
+    testImplementation 'org.junit.jupiter:junit-jupiter:6.1.2'
+    testImplementation 'org.junit.platform:junit-platform-suite:6.1.2'
+    testRuntimeOnly 'org.junit.platform:junit-platform-launcher:6.1.2'
 }
 
 // Make sure every single dependency is modularized.
@@ -173,7 +173,7 @@ idea {
 }
 
 tasks.named('wrapper', Wrapper) {
-    gradleVersion = '9.1.0'
+    gradleVersion = '9.6.1'
     distributionType = Wrapper.DistributionType.BIN
 }
 
diff --git a/gradle.properties b/gradle.properties
index a8867c13..ef872867 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -8,4 +8,4 @@ org.gradle.java.installations.auto-detect=true
 
 # Project Build Properties
 env=dev
-javafx.version=25.0.1
+javafx.version=25.0.4
diff --git a/gradle/wrapper/gradle-wrapper.properties b/gradle/wrapper/gradle-wrapper.properties
index 2e111328..a351597e 100644
--- a/gradle/wrapper/gradle-wrapper.properties
+++ b/gradle/wrapper/gradle-wrapper.properties
@@ -1,6 +1,6 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-9.1.0-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-9.6.1-bin.zip
 networkTimeout=10000
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
diff --git a/pom.xml b/pom.xml
index f1bbde93..336857bc 100644
--- a/pom.xml
+++ b/pom.xml
@@ -20,39 +20,40 @@
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
         <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
         <java.version>25</java.version>
-        <javafx.version>25.0.1</javafx.version>
+        <javafx.version>25.0.4</javafx.version>
         <maven.min.version>3.9.9</maven.min.version>
         <maven.compiler.source>${java.version}</maven.compiler.source>
         <maven.compiler.target>${java.version}</maven.compiler.target>
         <maven.compiler.release>${java.version}</maven.compiler.release>
         <maven.build.timestamp.format>yyyy.MM.dd</maven.build.timestamp.format>
-        <maven.compiler.plugin.version>3.14.1</maven.compiler.plugin.version>
-        <maven.enforcer.plugin.version>3.6.2</maven.enforcer.plugin.version>
+        <maven.compiler.plugin.version>3.15.0</maven.compiler.plugin.version>
+        <maven.enforcer.plugin.version>3.6.3</maven.enforcer.plugin.version>
         <maven.assembly.plugin.version>3.7.1</maven.assembly.plugin.version>
-        <maven.surefire.plugin.version>3.5.4</maven.surefire.plugin.version>
+        <maven.surefire.plugin.version>3.6.0-M1</maven.surefire.plugin.version>
         <maven.site.plugin.version>4.0.0-M16</maven.site.plugin.version>
         <javafx.maven.plugin.version>0.0.8</javafx.maven.plugin.version>
-        <codehaus.flatten.plugin.version>1.7.3</codehaus.flatten.plugin.version>
+        <codehaus.flatten.plugin.version>1.8.0</codehaus.flatten.plugin.version>
         <codehaus.build.helper.maven.plugin.version>3.6.1</codehaus.build.helper.maven.plugin.version>
-        <git.commit.maven.plugin.version>9.0.2</git.commit.maven.plugin.version>
-        <org.owasp.dependency-check-maven.plugin.version>12.1.8</org.owasp.dependency-check-maven.plugin.version>
-        <junit.jupiter.version>5.14.0</junit.jupiter.version>
-        <junit.jupiter.platform.version>1.14.0</junit.jupiter.platform.version>
+        <git.commit.maven.plugin.version>9.2.0</git.commit.maven.plugin.version>
+        <org.owasp.dependency-check-maven.plugin.version>12.2.2</org.owasp.dependency-check-maven.plugin.version>
+        <junit.jupiter.version>6.1.2</junit.jupiter.version>
+        <junit.jupiter.platform.version>6.1.2</junit.jupiter.platform.version>
         <litfx.controls.version>0.1.3</litfx.controls.version>
         <fxyz3d.version>0.6.0</fxyz3d.version>
         <hansolo.charts.version>21.0.27</hansolo.charts.version>
         <quickhull3d.version>1.0.0</quickhull3d.version>
         <apache.commons.math3.version>3.6.1</apache.commons.math3.version>
-        <apache.commons.lang3.version>3.19.0</apache.commons.lang3.version>
+        <apache.commons.lang3.version>3.20.0</apache.commons.lang3.version>
         <zeromq.jeromq.version>0.6.0</zeromq.jeromq.version>
-        <jackson.version>2.19.2</jackson.version>
+        <jackson.version>2.22</jackson.version>
+        <jackson.databind.version>2.22.1</jackson.databind.version>
         <sarxos.webcam.capture.version>0.3.12</sarxos.webcam.capture.version>
         <org.jflac.jflac-codec.version>1.5.2</org.jflac.jflac-codec.version>
         <com.tambapps.fft4j.version>2.0</com.tambapps.fft4j.version>
         <supermds.version>v2025.06.29</supermds.version>
-        <pdfbox.version>3.0.6</pdfbox.version>
-        <slf4j.version>2.0.17</slf4j.version>
-        <logback.version>1.5.20</logback.version>
+        <pdfbox.version>3.0.8</pdfbox.version>
+        <slf4j.version>2.0.18</slf4j.version>
+        <logback.version>1.5.38</logback.version>
         <mainClassName>edu.jhuapl.trinity.TrinityMain</mainClassName>
         <!-- Values for build.properties -->
         <trinity.title>Trinity</trinity.title>
@@ -212,7 +213,7 @@
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>
             <artifactId>jackson-databind</artifactId>
-            <version>${jackson.version}</version>
+            <version>${jackson.databind.version}</version>
         </dependency>
         <dependency>
             <groupId>com.github.sarxos</groupId>