Issues

• default database link not working

  snayfach/MIDAS#136 · Filter by author sinamajidian opened on Aug 17, 2026

• no outputs for speciation

  snayfach/MIDAS#135 · Filter by author qinghong2019 opened on Oct 18, 2023
  1

• test_class (__main__._07_RunSNPs) ... FAIL

  snayfach/MIDAS#130 · Filter by author Daisyiscool opened on Oct 2, 2022
  1

• Question regarding speed of execution

  snayfach/MIDAS#129 · Filter by author rdauria opened on Jul 12, 2022
  1

• How can I use MIDAS to get pN/pS on a per-gene basis?

  snayfach/MIDAS#127 · Filter by author JuliaMcGonigle opened on Mar 9, 2022

• Samtools missing binaries

  snayfach/MIDAS#126 · Filter by author kaysahu opened on Feb 1, 2022
  3

• samtools errors

  snayfach/MIDAS#125 · Filter by author tbazilegith opened on Jan 10, 2022
  1

• build custom database error

  snayfach/MIDAS#124 · Filter by author wangxgong opened on Nov 12, 2021

• samtools invalid option 'f'

  snayfach/MIDAS#123 · Filter by author aflynncarroll opened on Oct 26, 2021

• Database marker gene file "phyeco.map" has wrong genome_id label

  snayfach/MIDAS#122 · Filter by author zeqianli opened on Sep 24, 2021

• Test 11 and 14 fails (and fixes)

  snayfach/MIDAS#120 · Filter by author zeqianli opened on Aug 18, 2021

• Building database error

  snayfach/MIDAS#119 · Filter by author JX-Zhong opened on Jul 14, 2021
  3

• Can't download database

  snayfach/MIDAS#118 · Filter by author zckoo007 opened on May 16, 2021

• test_midas.py fail for test 7

  snayfach/MIDAS#117 · Filter by author linzhouzz opened on Apr 29, 2021
  1

• Strain tracking - getting identified strain names

  snayfach/MIDAS#116 · Filter by author sanpande opened on Feb 3, 2021

• setup.py: add scripts

  snayfach/MIDAS#114 · Filter by author nick-youngblut opened on Dec 19, 2020

• TypeError: cannot pickle '_io.TextIOWrapper' object

  snayfach/MIDAS#112 · Filter by author Ivan-vechetti opened on Dec 17, 2020
  7

• Error: could not execute bowtie2 binary

  snayfach/MIDAS#110 · Filter by author BoyanZhou opened on Sep 16, 2020
  5

• Conda Install

  snayfach/MIDAS#108 · Filter by author JChristopherEllis opened on Feb 28, 2020
  5

• Inconsistent species results

  snayfach/MIDAS#107 · Filter by author mcleanlab opened on Feb 20, 2020

• Interpreting output from strain_tracking.py track_markers

  snayfach/MIDAS#106 · Filter by author dadahan opened on Dec 7, 2019
  1

• Strain tracking: identifying rare SNPs that discriminate individual strains

  snayfach/MIDAS#105 · Filter by author dadahan opened on Nov 12, 2019

• Inclusion criteria for MAGs when setting up custom database

  snayfach/MIDAS#104 · Filter by author adityabandla opened on Nov 6, 2019

• Support for Pavian

  snayfach/MIDAS#100 · Filter by author Anto007 opened on May 13, 2019

• MIDAS is looking in the wrong place for 3rd party executables

  snayfach/MIDAS#99 · Filter by author jolespin opened on Apr 1, 2019
  2