Parameter scans for microtubule growth dynamics

[mogres]

Use Case

As a modeler, I want to find parameter sets that result in microtuble growth.

Acceptance Criteria

• Subset(s) of parameters for which consistent microtubule growth is observed
• Analysis functions to obtain metrics for microtubule growth:
  • Length of protofilaments over time
  • Growth, shrinkage, attachment, and detachment events over time

[mogres]

• Debug timing issues
  Incorporated difference between number of simulation steps and visualization steps in scaled_time_step_us

[mogres]

• Debug protofilament lengths for disappearing neighbors for microtubules_scan_growth_attach_20220418_x100_growth_x100_attach_1.h5
  • Requires re-analyzing h5 file with correct box size
  • Requires looking into site#remove agents