From 60b44bf548118a53631bd9f6b20b53220bbc0f7a Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Tue, 26 May 2026 13:19:48 +0900 Subject: [PATCH 1/9] feat(journal): add G-screen --- _posts/2026-03-03-G-screen.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 _posts/2026-03-03-G-screen.md diff --git a/_posts/2026-03-03-G-screen.md b/_posts/2026-03-03-G-screen.md new file mode 100644 index 00000000000..00af2558b9c --- /dev/null +++ b/_posts/2026-03-03-G-screen.md @@ -0,0 +1,12 @@ +--- +title: "G-screen: Scalable Receptor-Aware Virtual Screening through Flexible Ligand Alignment" +authors: "Nuri Jung, Hahnbeom Park, Jinsol Yang* and Chaok Seok*" +journal: Journal of Cheminformatics +categories: + - Prediction of protein-ligand interactions +tags: + - method + - protein-ligand interaction + - scoring +redirect_to: https://doi.org/10.64898/2026.03.03.707320 +--- \ No newline at end of file From 2398dc953d591826ddf86186964040bd6fe84656 Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 13:51:20 +0900 Subject: [PATCH 2/9] docs(journal): rename G-screen --- _posts/{2026-03-03-G-screen.md => 2026-05-28-G-screen.md} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename _posts/{2026-03-03-G-screen.md => 2026-05-28-G-screen.md} (100%) diff --git a/_posts/2026-03-03-G-screen.md b/_posts/2026-05-28-G-screen.md similarity index 100% rename from _posts/2026-03-03-G-screen.md rename to _posts/2026-05-28-G-screen.md From cbeda906dcbd56b67cca4bec6c7e6068605750f1 Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 13:52:43 +0900 Subject: [PATCH 3/9] docs(journal): rename OR52E8 --- _posts/{7026-05-12-OR52E8.md => 2026-05-20-OR52E8.md} | 1 + 1 file changed, 1 insertion(+) rename _posts/{7026-05-12-OR52E8.md => 2026-05-20-OR52E8.md} (84%) diff --git a/_posts/7026-05-12-OR52E8.md b/_posts/2026-05-20-OR52E8.md similarity index 84% rename from _posts/7026-05-12-OR52E8.md rename to _posts/2026-05-20-OR52E8.md index e6d692d1bf8..37a77782cc5 100644 --- a/_posts/7026-05-12-OR52E8.md +++ b/_posts/2026-05-20-OR52E8.md @@ -6,5 +6,6 @@ categories: - Applications and collaborations tags: - with experimentalists +redirect_to: https://www.nature.com/articles/s42003-026-10317-6 accepted_in: 2026-05-11 --- From bf6af1ebad00aa451a6b1e93703958adf7df9fd8 Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 14:08:41 +0900 Subject: [PATCH 4/9] feat(journal): add MotifLeadDB --- _posts/2026-05-20-MotifLeadDB.md | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 _posts/2026-05-20-MotifLeadDB.md diff --git a/_posts/2026-05-20-MotifLeadDB.md b/_posts/2026-05-20-MotifLeadDB.md new file mode 100644 index 00000000000..d0f2c6db6f2 --- /dev/null +++ b/_posts/2026-05-20-MotifLeadDB.md @@ -0,0 +1,10 @@ +--- +title: "MotifLeadDB: A Hierarchical Structural Data Set for Congeneric Ligand Binding Activity Change" +authors: "Nawoon Kim, Byunghyun Bae, Nuri Jung, Chaok Seok, Hahnbeom Park*" +journal: Journal of Cheminformatics +categories: + - prediction of protein ligand interaction +tags: + - protein-ligand binding affinity +redirect_to: https://pubs.acs.org/doi/10.1021/acs.jcim.6c00128 +--- \ No newline at end of file From a3a5dd1a8ecec1a6923aef1d7ea86d27f780a17e Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 14:14:59 +0900 Subject: [PATCH 5/9] fix(journal): delete 'accepted_in' tag --- _posts/2026-05-20-OR52E8.md | 1 - 1 file changed, 1 deletion(-) diff --git a/_posts/2026-05-20-OR52E8.md b/_posts/2026-05-20-OR52E8.md index 37a77782cc5..1a871fe73d3 100644 --- a/_posts/2026-05-20-OR52E8.md +++ b/_posts/2026-05-20-OR52E8.md @@ -7,5 +7,4 @@ categories: tags: - with experimentalists redirect_to: https://www.nature.com/articles/s42003-026-10317-6 -accepted_in: 2026-05-11 --- From 98e4d6181abcf369d4c0bb57238e73726b98d431 Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 14:27:24 +0900 Subject: [PATCH 6/9] fix(journal): minor fixation --- _posts/2026-04-10-GalaxyCDock.md | 2 +- _posts/2026-05-20-MotifLeadDB.md | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/_posts/2026-04-10-GalaxyCDock.md b/_posts/2026-04-10-GalaxyCDock.md index 51052b5e047..71d21dd2561 100644 --- a/_posts/2026-04-10-GalaxyCDock.md +++ b/_posts/2026-04-10-GalaxyCDock.md @@ -3,7 +3,7 @@ title: "GalaxyCDock: Webserver for Covalent Protein–Ligand Binding Mode Predic authors: Sumin Lee, Nuri Jung, Hyeonuk Woo, Jinsol Yang and Chaok Seok* journal: Journal of Molecular Biology categories: - - prediction of protein ligand interaction + - Prediction of protein ligand interaction tags: - protein-ligand docking redirect_to: https://doi.org/10.1016/j.jmb.2026.169807 diff --git a/_posts/2026-05-20-MotifLeadDB.md b/_posts/2026-05-20-MotifLeadDB.md index d0f2c6db6f2..4caa3c0f347 100644 --- a/_posts/2026-05-20-MotifLeadDB.md +++ b/_posts/2026-05-20-MotifLeadDB.md @@ -1,9 +1,9 @@ --- title: "MotifLeadDB: A Hierarchical Structural Data Set for Congeneric Ligand Binding Activity Change" -authors: "Nawoon Kim, Byunghyun Bae, Nuri Jung, Chaok Seok, Hahnbeom Park*" +authors: "Nawoon Kim, Byunghyun Bae, Nuri Jung, Chaok Seok and Hahnbeom Park*" journal: Journal of Cheminformatics categories: - - prediction of protein ligand interaction + - Prediction of protein ligand interaction tags: - protein-ligand binding affinity redirect_to: https://pubs.acs.org/doi/10.1021/acs.jcim.6c00128 From ec8e8deb83af58cd3cf36b00c2e232a056f88815 Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 14:27:56 +0900 Subject: [PATCH 7/9] feat(journal): add ProMiSE --- _posts/7026-05-01-ProMiSE.md | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 _posts/7026-05-01-ProMiSE.md diff --git a/_posts/7026-05-01-ProMiSE.md b/_posts/7026-05-01-ProMiSE.md new file mode 100644 index 00000000000..467ce03c20c --- /dev/null +++ b/_posts/7026-05-01-ProMiSE.md @@ -0,0 +1,10 @@ +--- +title: "ProMiSE: Protein Multi-State Evaluation Benchmark in Biological Contexts" +authors: Bonjae Ku, Seeun Kim, Yubeen Kim, Hahnbeom Park* and Chaok Seok* +journal: International Conference on Machine Learning, 2026. +categories: + - Benchmark +tags: + - +accepted_in: 2026-05-01 +--- From 7693f40ba0d51ebdc9d0d9bf9563eda5393cc2bd Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 14:30:05 +0900 Subject: [PATCH 8/9] feat(journal): add PrOMet --- _posts/8026-01-01-PrOMet.md | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 _posts/8026-01-01-PrOMet.md diff --git a/_posts/8026-01-01-PrOMet.md b/_posts/8026-01-01-PrOMet.md new file mode 100644 index 00000000000..7e11932521f --- /dev/null +++ b/_posts/8026-01-01-PrOMet.md @@ -0,0 +1,10 @@ +--- +title: "PrOMet: Accurate and Robust Metal-binding site and Type Prediction" +authors: Gangeun Park, Chaok Seok and Hahnbeom Park* +journal: +categories: + - Protein-ligand interaction +tags: + - protein ligand interaction prediction +submitted_in: 2026-05-01 +--- From 4712774fc249cdd6ec6b79482a4b6fab13a5038c Mon Sep 17 00:00:00 2001 From: HongSuk Kim Date: Fri, 29 May 2026 16:36:32 +0900 Subject: [PATCH 9/9] fix(journal): change the redirect_to links to doi link format --- _posts/2026-05-20-MotifLeadDB.md | 2 +- _posts/2026-05-20-OR52E8.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/_posts/2026-05-20-MotifLeadDB.md b/_posts/2026-05-20-MotifLeadDB.md index 4caa3c0f347..26378849671 100644 --- a/_posts/2026-05-20-MotifLeadDB.md +++ b/_posts/2026-05-20-MotifLeadDB.md @@ -6,5 +6,5 @@ categories: - Prediction of protein ligand interaction tags: - protein-ligand binding affinity -redirect_to: https://pubs.acs.org/doi/10.1021/acs.jcim.6c00128 +redirect_to: https://doi.org/10.1021/acs.jcim.6c00128 --- \ No newline at end of file diff --git a/_posts/2026-05-20-OR52E8.md b/_posts/2026-05-20-OR52E8.md index 1a871fe73d3..c325a2d3d32 100644 --- a/_posts/2026-05-20-OR52E8.md +++ b/_posts/2026-05-20-OR52E8.md @@ -6,5 +6,5 @@ categories: - Applications and collaborations tags: - with experimentalists -redirect_to: https://www.nature.com/articles/s42003-026-10317-6 +redirect_to: https://doi.org/10.1038/s42003-026-10317-6 ---