diff --git a/.cruft.json b/.cruft.json
index 7013ef9..1ba96af 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "948ea324f7aa5f1f6b8b58a5e648e283a8e92fb4",
+  "commit": "f476eec62c517ffbf38ea6de7f5c14dfedd73e77",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -37,7 +37,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "948ea324f7aa5f1f6b8b58a5e648e283a8e92fb4"
+      "_commit": "f476eec62c517ffbf38ea6de7f5c14dfedd73e77"
     }
   },
   "directory": null
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 0284b58..c6d9c51 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.5.4
+    rev: v2.5.5
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.25.3
+    rev: v2.26.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.22
+    rev: v0.16.0
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]
@@ -48,7 +48,7 @@ repos:
         args: [--assume-in-merge]
 
   - repo: https://github.com/zizmorcore/zizmor-pre-commit
-    rev: v1.27.0
+    rev: v1.28.0
     hooks:
       - id: zizmor
         args: [--no-progress, --fix]