From 9d96dff8e24ee0d560c3118e3b8cae2de414fc1a Mon Sep 17 00:00:00 2001 From: Kevin Detry <206546615+kevindetry-milaboratories@users.noreply.github.com> Date: Tue, 30 Jun 2026 18:05:30 +0200 Subject: [PATCH] Upgrade SDK --- .changeset/ripe-sites-do.md | 7 +++ pnpm-lock.yaml | 75 ++++++++++++++---------------- pnpm-workspace.yaml | 4 +- software/parse-h5ad/package.json | 1 - software/parse-seurat/package.json | 1 - 5 files changed, 44 insertions(+), 44 deletions(-) create mode 100644 .changeset/ripe-sites-do.md diff --git a/.changeset/ripe-sites-do.md b/.changeset/ripe-sites-do.md new file mode 100644 index 0000000..ad8df35 --- /dev/null +++ b/.changeset/ripe-sites-do.md @@ -0,0 +1,7 @@ +--- +"@platforma-open/milaboratories.samples-and-data.parse-seurat": patch +"@platforma-open/milaboratories.samples-and-data.parse-h5ad": patch +"@platforma-open/milaboratories.samples-and-data": patch +--- + +Upgrade SDK diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index c56a1df..67b4672 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -28,8 +28,8 @@ catalogs: specifier: ^1.0.1 version: 1.0.1 '@platforma-sdk/block-tools': - specifier: 2.11.5 - version: 2.11.5 + specifier: 2.11.6 + version: 2.11.6 '@platforma-sdk/model': specifier: 1.79.20 version: 1.79.20 @@ -40,8 +40,8 @@ catalogs: specifier: 4.0.11 version: 4.0.11 '@platforma-sdk/test': - specifier: 1.79.21 - version: 1.79.21 + specifier: 1.79.23 + version: 1.79.23 '@platforma-sdk/ui-vue': specifier: 1.79.20 version: 1.79.20 @@ -101,7 +101,7 @@ importers: version: 1.6.0(@types/node@24.5.2)(rollup@4.37.0)(vue@3.5.25(typescript@5.9.3))(yaml@2.8.1) '@platforma-sdk/block-tools': specifier: 'catalog:' - version: 2.11.5(@types/node@24.5.2) + version: 2.11.6(@types/node@24.5.2) shx: specifier: 'catalog:' version: 0.4.0 @@ -128,7 +128,7 @@ importers: version: link:../workflow '@platforma-sdk/block-tools': specifier: 'catalog:' - version: 2.11.5(@types/node@24.5.2) + version: 2.11.6(@types/node@24.5.2) '@platforma-sdk/model': specifier: 'catalog:' version: 1.79.20 @@ -162,7 +162,7 @@ importers: version: 1.3.0 '@platforma-sdk/block-tools': specifier: 'catalog:' - version: 2.11.5(@types/node@24.5.2) + version: 2.11.6(@types/node@24.5.2) software/parse-h5ad: devDependencies: @@ -208,7 +208,7 @@ importers: version: 1.3.0 '@platforma-sdk/test': specifier: 'catalog:' - version: 1.79.21(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@6.2.3(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1)) + version: 1.79.23(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@6.2.3(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1)) vitest: specifier: 'catalog:' version: 4.0.10(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1) @@ -288,7 +288,7 @@ importers: version: 4.0.11 '@platforma-sdk/test': specifier: 'catalog:' - version: 1.79.21(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@8.0.16(@types/node@24.5.2)(yaml@2.8.1)) + version: 1.79.23(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@8.0.16(@types/node@24.5.2)(yaml@2.8.1)) shx: specifier: 'catalog:' version: 0.4.0 @@ -1101,8 +1101,8 @@ packages: resolution: {integrity: sha512-7WvA761yI7eLCdJE19uNa/a6fLxytVrKJ/utBJ6GelZQFuA/LT12VkG6r0uAFtU8afY9Sr89078oLzZSZJR/oA==} engines: {node: '>=22.19.0'} - '@milaboratories/pl-drivers@1.16.2': - resolution: {integrity: sha512-wTg/I+H9dCtIDw8c+YDGTCDiTV6HkigFsTtx0ykBX67x6Ey01wQdDJRZcUYFrgh4EusbdElWjPP7HNBcTtypzQ==} + '@milaboratories/pl-drivers@1.16.3': + resolution: {integrity: sha512-/HObfG0uuFDYUd8G3qxlhrvhvTo8T5MH42+Vpr8snN+YnSHGyMXo6rw6oKRNO+h/GF+kbI5DTr9kNsQVEwyFng==} engines: {node: '>=22'} '@milaboratories/pl-error-like@1.12.10': @@ -1121,8 +1121,8 @@ packages: '@milaboratories/pl-http@1.2.4': resolution: {integrity: sha512-QKmhx+WEvJCV9dUy/SBdQk/ApaJ5ewBFgm/b+XPlS10SusAdqUUTGvK5+hq8YSuUMXlHb/dk++UtI5YlDuDl2Q==} - '@milaboratories/pl-middle-layer@1.64.39': - resolution: {integrity: sha512-yTbIjwK+2fUAZh5a0KqvfOdVEHmek2wq+qmwzoMFvqrLAq0XbYdWYTqnnNYPsLz7fpp3SlaYgUDaVJiZ8Z8SnA==} + '@milaboratories/pl-middle-layer@1.64.41': + resolution: {integrity: sha512-6xXwmTaaImd6HQ2PZgUWGf1gXsfgEPz3zWQsmaUaPMyMusjPVynPCX2hnThqrPVf54mEMlvc3HTGaC+dofDF0g==} engines: {node: '>=22.19.0'} '@milaboratories/pl-model-backend@1.4.9': @@ -1755,8 +1755,8 @@ packages: '@platforma-open/milaboratories.software-small-binaries@2.1.1': resolution: {integrity: sha512-KN1PR7YgUUfx1dxh/TtcoWpSZbOXbRxXzQuJ505qHuXuE0spYwC7bXnvJsEYbEwRcPMa0foTrjBnPNORE4yr+Q==} - '@platforma-sdk/block-tools@2.11.5': - resolution: {integrity: sha512-dM4KLiJLz3zQgJfJklq9M8/Q5yTIiaDLZ2ui1o0fsKoe3wB+cGA0VJCNAjjgLeKmvZd6zqd+2OmXpCn5pOBn+g==} + '@platforma-sdk/block-tools@2.11.6': + resolution: {integrity: sha512-CyekNfqEildNeTrkjAeaWC7ah+skGMb3d/crSZSgCWACPIVQwg2oRZiJliwmJU/ylcTONPDAef7DYOtmfXsgtw==} hasBin: true '@platforma-sdk/blocks-deps-updater@2.2.0': @@ -1778,8 +1778,8 @@ packages: engines: {node: '>=22'} hasBin: true - '@platforma-sdk/test@1.79.21': - resolution: {integrity: sha512-SsNSlcEraehHhR1AK3VHplaMSDx2sDfoHQsQjzbf86sCBF/MR/L5IoDG0Wcms+zEqdKIWVcpfF3phcP/GAbXkw==} + '@platforma-sdk/test@1.79.23': + resolution: {integrity: sha512-vb5K4Rtjy5ogom3fBYpOxvKL+Nb50iURUdd1vjzN3pcQGx47omBnDr9YvNvUsRC3INhZibLzy44dUKD2la/IMw==} '@platforma-sdk/ui-vue@1.79.20': resolution: {integrity: sha512-VwBG8MKV1M2KMR2PgW+o6uxJJRCFGihaRsnkzLL8HGKM/Vr9k3FY/V929B1XAhU5y9wb1g7fKNJvy9JNEq5GiQ==} @@ -3798,9 +3798,6 @@ packages: resolution: {integrity: sha512-rJgTQnkUnH1sFw8yT6VSU3zD3sWmu6sZhIseY8VX+GRu3P6F7Fu+JNDoXfklElbLJSnc3FUQHVe4cU5hj+BcUg==} engines: {node: '>=0.10.0'} - obug@2.1.1: - resolution: {integrity: sha512-uTqF9MuPraAQ+IsnPf366RG4cP9RtUi7MLO1N3KEc+wb0a6yKpeL0lmk2IB1jY5KHPAlTc6T/JRdC/YqxHNwkQ==} - obug@2.1.3: resolution: {integrity: sha512-9miFgM2OFba7hB+pRgvtV84pYTBaoTHohvmIgiRt6dRIzbwEOIaNaP+dIlGs2fNFoB0SeISs0Jz5WFVRid6Xyg==} engines: {node: '>=12.20.0'} @@ -6128,7 +6125,7 @@ snapshots: yaml: 2.8.1 zod: 3.25.76 - '@milaboratories/pl-drivers@1.16.2': + '@milaboratories/pl-drivers@1.16.3': dependencies: '@grpc/grpc-js': 1.13.4 '@milaboratories/computable': 2.9.5 @@ -6180,7 +6177,7 @@ snapshots: dependencies: undici: 7.16.0 - '@milaboratories/pl-middle-layer@1.64.39(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)': + '@milaboratories/pl-middle-layer@1.64.41(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)': dependencies: '@milaboratories/computable': 2.9.5 '@milaboratories/helpers': 1.14.2 @@ -6190,7 +6187,7 @@ snapshots: '@milaboratories/pframes-rs-wasm': 1.1.52(@bytecodealliance/preview2-shim@0.17.8)(@milaboratories/pl-model-common@1.46.2)(@milaboratories/pl-model-middle-layer@1.30.9) '@milaboratories/pl-client': 3.12.0 '@milaboratories/pl-deployments': 3.0.8 - '@milaboratories/pl-drivers': 1.16.2 + '@milaboratories/pl-drivers': 1.16.3 '@milaboratories/pl-errors': 1.4.24 '@milaboratories/pl-http': 1.2.4 '@milaboratories/pl-model-backend': 1.4.9 @@ -6199,7 +6196,7 @@ snapshots: '@milaboratories/pl-tree': 1.12.14 '@milaboratories/resolve-helper': 1.1.3 '@milaboratories/ts-helpers': 1.8.3 - '@platforma-sdk/block-tools': 2.11.5(@types/node@24.5.2) + '@platforma-sdk/block-tools': 2.11.6(@types/node@24.5.2) '@platforma-sdk/model': 1.79.20 '@platforma-sdk/workflow-tengo': 6.6.5 canonicalize: 2.1.0 @@ -6286,7 +6283,7 @@ snapshots: oxlint: 1.63.0 oxlint-plugin-eslint: 1.63.0 rolldown: 1.1.3 - rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.6.3)) + rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.9.3)) rollup-plugin-copy: 3.5.0 rollup-plugin-sourcemaps2: 0.5.7(@types/node@24.5.2)(rollup@4.37.0) typescript: 5.9.3 @@ -6327,7 +6324,7 @@ snapshots: oxlint: 1.63.0 oxlint-plugin-eslint: 1.63.0 rolldown: 1.1.3 - rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.6.3)) + rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.9.3)) rollup-plugin-copy: 3.5.0 rollup-plugin-sourcemaps2: 0.5.7(@types/node@24.5.2)(rollup@4.37.0) typescript: 5.9.3 @@ -6368,7 +6365,7 @@ snapshots: oxlint: 1.63.0 oxlint-plugin-eslint: 1.63.0 rolldown: 1.1.3 - rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.6.3)) + rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.9.3)) rollup-plugin-copy: 3.5.0 rollup-plugin-sourcemaps2: 0.5.7(@types/node@24.5.2)(rollup@4.37.0) typescript: 5.9.3 @@ -6409,7 +6406,7 @@ snapshots: oxlint: 1.63.0 oxlint-plugin-eslint: 1.63.0 rolldown: 1.1.3 - rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.6.3)) + rolldown-plugin-dts: 0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.9.3)) rollup-plugin-copy: 3.5.0 rollup-plugin-sourcemaps2: 0.5.7(@types/node@24.5.2)(rollup@4.37.0) typescript: 5.9.3 @@ -6885,7 +6882,7 @@ snapshots: '@platforma-open/milaboratories.software-small-binaries.mnz-client': 1.6.5 '@platforma-open/milaboratories.software-small-binaries.table-converter': 1.3.5 - '@platforma-sdk/block-tools@2.11.5(@types/node@24.5.2)': + '@platforma-sdk/block-tools@2.11.6(@types/node@24.5.2)': dependencies: '@aws-sdk/client-s3': 3.859.0 '@inquirer/prompts': 7.10.1(@types/node@24.5.2) @@ -6955,11 +6952,11 @@ snapshots: commander: 15.0.0 winston: 3.17.0 - '@platforma-sdk/test@1.79.21(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@6.2.3(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1))': + '@platforma-sdk/test@1.79.23(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@6.2.3(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1))': dependencies: '@milaboratories/computable': 2.9.5 '@milaboratories/pl-client': 3.12.0 - '@milaboratories/pl-middle-layer': 1.64.39(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2) + '@milaboratories/pl-middle-layer': 1.64.41(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2) '@milaboratories/pl-tree': 1.12.14 '@platforma-sdk/model': 1.79.20 '@vitest/coverage-istanbul': 4.1.5(vitest@4.0.10(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1)) @@ -6983,11 +6980,11 @@ snapshots: - supports-color - vite - '@platforma-sdk/test@1.79.21(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@8.0.16(@types/node@24.5.2)(yaml@2.8.1))': + '@platforma-sdk/test@1.79.23(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2)(vite@8.0.16(@types/node@24.5.2)(yaml@2.8.1))': dependencies: '@milaboratories/computable': 2.9.5 '@milaboratories/pl-client': 3.12.0 - '@milaboratories/pl-middle-layer': 1.64.39(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2) + '@milaboratories/pl-middle-layer': 1.64.41(@bytecodealliance/preview2-shim@0.17.8)(@types/node@24.5.2) '@milaboratories/pl-tree': 1.12.14 '@platforma-sdk/model': 1.79.20 '@vitest/coverage-istanbul': 4.1.5(vitest@4.1.5) @@ -7757,7 +7754,7 @@ snapshots: istanbul-lib-report: 3.0.1 istanbul-reports: 3.2.0 magicast: 0.5.2 - obug: 2.1.1 + obug: 2.1.3 tinyrainbow: 3.1.0 vitest: 4.0.10(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1) transitivePeerDependencies: @@ -7773,7 +7770,7 @@ snapshots: istanbul-lib-report: 3.0.1 istanbul-reports: 3.2.0 magicast: 0.5.2 - obug: 2.1.1 + obug: 2.1.3 tinyrainbow: 3.1.0 vitest: 4.1.5(@types/node@24.5.2)(@vitest/coverage-istanbul@4.1.5)(vite@6.2.3(@types/node@24.5.2)(lightningcss@1.32.0)(yaml@2.8.1)) transitivePeerDependencies: @@ -9129,8 +9126,6 @@ snapshots: object-assign@4.1.1: {} - obug@2.1.1: {} - obug@2.1.3: {} once@1.4.0: @@ -9482,7 +9477,7 @@ snapshots: dependencies: glob: 10.4.5 - rolldown-plugin-dts@0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.6.3)): + rolldown-plugin-dts@0.26.0(rolldown@1.1.3)(typescript@5.9.3)(vue-tsc@3.3.5(typescript@5.9.3)): dependencies: '@babel/generator': 8.0.0 '@babel/helper-validator-identifier': 8.0.2 @@ -10044,7 +10039,7 @@ snapshots: es-module-lexer: 2.0.0 expect-type: 1.3.0 magic-string: 0.30.21 - obug: 2.1.1 + obug: 2.1.3 pathe: 2.0.3 picomatch: 4.0.4 std-env: 4.1.0 @@ -10072,7 +10067,7 @@ snapshots: es-module-lexer: 2.0.0 expect-type: 1.3.0 magic-string: 0.30.21 - obug: 2.1.1 + obug: 2.1.3 pathe: 2.0.3 picomatch: 4.0.4 std-env: 4.1.0 diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml index afc5ed1..ae8a915 100644 --- a/pnpm-workspace.yaml +++ b/pnpm-workspace.yaml @@ -8,7 +8,7 @@ packages: - workflow catalog: - "@platforma-sdk/block-tools": 2.11.5 + "@platforma-sdk/block-tools": 2.11.6 "@platforma-sdk/model": 1.79.20 "@platforma-sdk/ui-vue": 1.79.20 "@platforma-sdk/tengo-builder": 4.0.11 @@ -19,7 +19,7 @@ catalog: "@platforma-open/milaboratories.runenv-python-3": ^1.7.5 "@platforma-open/milaboratories.runenv-r-samples-and-data": ^1.0.1 - "@platforma-sdk/test": 1.79.21 + "@platforma-sdk/test": 1.79.23 "@milaboratories/helpers": 1.14.1 "@milaboratories/pl-model-common": ^1.31.2 diff --git a/software/parse-h5ad/package.json b/software/parse-h5ad/package.json index 9a65bbb..bc489f5 100644 --- a/software/parse-h5ad/package.json +++ b/software/parse-h5ad/package.json @@ -1,7 +1,6 @@ { "name": "@platforma-open/milaboratories.samples-and-data.parse-h5ad", "version": "1.1.4", - "private": true, "description": "Samples and Data software package", "files": [ "./dist/**/*" diff --git a/software/parse-seurat/package.json b/software/parse-seurat/package.json index 72f03cf..b36ad58 100644 --- a/software/parse-seurat/package.json +++ b/software/parse-seurat/package.json @@ -1,7 +1,6 @@ { "name": "@platforma-open/milaboratories.samples-and-data.parse-seurat", "version": "1.1.3", - "private": true, "description": "Seurat RDS file parser for Samples and Data", "files": [ "./dist/**/*"