From 96d08eea2213975f11d5d0080f4f5cd55ef7e1f0 Mon Sep 17 00:00:00 2001 From: Vitalii Popov Date: Wed, 25 Feb 2026 15:49:26 +0100 Subject: [PATCH 1/4] Adds dash system dependency --- software/parse-seurat/Dockerfile | 1 + 1 file changed, 1 insertion(+) diff --git a/software/parse-seurat/Dockerfile b/software/parse-seurat/Dockerfile index bdc1178..ca10a5d 100644 --- a/software/parse-seurat/Dockerfile +++ b/software/parse-seurat/Dockerfile @@ -8,6 +8,7 @@ ENV RENV_CONFIG_REPOS_OVERRIDE=https://cloud.r-project.org # Install system dependencies required for R packages RUN apt-get update && apt-get install -y \ + dash \ libcurl4-openssl-dev \ libssl-dev \ libxml2-dev \ From 478f5e7a0ebdc26322055570b7f4aeac808d1398 Mon Sep 17 00:00:00 2001 From: Vitalii Popov Date: Wed, 25 Feb 2026 17:04:21 +0100 Subject: [PATCH 2/4] Add changeset --- .changeset/dash-dependency.md | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 .changeset/dash-dependency.md diff --git a/.changeset/dash-dependency.md b/.changeset/dash-dependency.md new file mode 100644 index 0000000..44c5e38 --- /dev/null +++ b/.changeset/dash-dependency.md @@ -0,0 +1,5 @@ +--- +'@platforma-open/milaboratories.samples-and-data': patch +--- + +Adds dash system dependency From 4d9a938945579a0b517136ef0ec294f46c58d165 Mon Sep 17 00:00:00 2001 From: Vitalii Popov Date: Mon, 2 Mar 2026 19:14:21 +0100 Subject: [PATCH 3/4] Pin all catalog deps with ~ prefix, bump package-builder to 3.11.4 --- .changeset/bump-package-builder.md | 5 + pnpm-lock.yaml | 728 +++++++++++++++++++++-------- pnpm-workspace.yaml | 34 +- 3 files changed, 554 insertions(+), 213 deletions(-) create mode 100644 .changeset/bump-package-builder.md diff --git a/.changeset/bump-package-builder.md b/.changeset/bump-package-builder.md new file mode 100644 index 0000000..4c7d80b --- /dev/null +++ b/.changeset/bump-package-builder.md @@ -0,0 +1,5 @@ +--- +'@platforma-open/milaboratories.samples-and-data': patch +--- + +Bump package-builder to 3.11.4 diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 6a2a1e4..8debcfe 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -7,16 +7,16 @@ settings: catalogs: default: '@changesets/cli': - specifier: ^2.29.7 + specifier: ~2.29.7 version: 2.29.7 '@milaboratories/helpers': specifier: 1.13.0 version: 1.13.0 '@platforma-open/milaboratories.runenv-python-3': - specifier: ^1.7.5 + specifier: ~1.7.5 version: 1.7.5 '@platforma-open/milaboratories.runenv-r-samples-and-data': - specifier: ^1.0.1 + specifier: ~1.0.1 version: 1.0.1 '@platforma-sdk/block-tools': specifier: 2.6.54 @@ -25,14 +25,14 @@ catalogs: specifier: 2.0.0 version: 2.0.0 '@platforma-sdk/eslint-config': - specifier: ^1.2.0 + specifier: ~1.2.0 version: 1.2.0 '@platforma-sdk/model': specifier: 1.51.2 version: 1.51.2 '@platforma-sdk/package-builder': - specifier: 3.10.7 - version: 3.10.7 + specifier: ~3.11.4 + version: 3.11.4 '@platforma-sdk/tengo-builder': specifier: 2.4.8 version: 2.4.8 @@ -49,46 +49,46 @@ 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'@jridgewell/sourcemap-codec': 1.5.5 + '@jridgewell/sourcemap-codec': 1.5.0 '@jridgewell/trace-mapping': 0.3.31 '@jridgewell/remapping@2.3.5': @@ -4967,12 +5268,14 @@ snapshots: '@jridgewell/resolve-uri@3.1.2': {} + '@jridgewell/sourcemap-codec@1.5.0': {} + '@jridgewell/sourcemap-codec@1.5.5': {} '@jridgewell/trace-mapping@0.3.31': dependencies: '@jridgewell/resolve-uri': 3.1.2 - '@jridgewell/sourcemap-codec': 1.5.5 + '@jridgewell/sourcemap-codec': 1.5.0 '@js-sdsl/ordered-map@4.4.2': {} @@ -5562,17 +5865,15 @@ snapshots: utility-types: 3.11.0 zod: 3.23.8 - '@platforma-sdk/package-builder@3.10.7': + '@platforma-sdk/package-builder@3.11.4': dependencies: '@aws-sdk/client-s3': 3.859.0 '@aws-sdk/lib-storage': 3.859.0(@aws-sdk/client-s3@3.859.0) - '@milaboratories/resolve-helper': 1.1.1 + '@milaboratories/resolve-helper': 1.1.2 '@oclif/core': 4.0.37 '@types/archiver': 6.0.4 '@types/node': 24.5.2 archiver: 7.0.1 - canonicalize: 2.1.0 - tar: 7.4.3 undici: 7.16.0 winston: 3.17.0 yaml: 2.8.1 @@ -5601,9 +5902,9 @@ snapshots: '@milaboratories/pl-tree': 1.8.28 '@milaboratories/ts-helpers': 1.5.4 '@platforma-sdk/model': 1.51.2 - '@vitest/coverage-istanbul': 4.0.16(vitest@4.0.16(@types/node@24.5.2)(yaml@2.8.1)) + '@vitest/coverage-istanbul': 4.0.18(vitest@4.0.18(@types/node@24.5.2)(yaml@2.8.1)) eslint: 9.37.0 - vitest: 4.0.16(@types/node@24.5.2)(yaml@2.8.1) + vitest: 4.0.18(@types/node@24.5.2)(yaml@2.8.1) transitivePeerDependencies: - '@edge-runtime/vm' - '@eslint/js' @@ -6228,6 +6529,8 @@ snapshots: '@types/uuid@9.0.8': {} + '@types/web-bluetooth@0.0.20': {} + '@types/web-bluetooth@0.0.21': {} '@typescript-eslint/eslint-plugin@8.46.0(@typescript-eslint/parser@8.46.0(eslint@9.37.0)(typescript@5.6.3))(eslint@9.37.0)(typescript@5.6.3)': @@ -6330,12 +6633,12 @@ snapshots: transitivePeerDependencies: - supports-color - '@vitejs/plugin-vue@5.2.3(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3))': + '@vitejs/plugin-vue@5.2.3(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3))': dependencies: - vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) vue: 3.5.25(typescript@5.6.3) - '@vitest/coverage-istanbul@4.0.16(vitest@4.0.16(@types/node@24.5.2)(yaml@2.8.1))': + '@vitest/coverage-istanbul@4.0.18(vitest@4.0.18(@types/node@24.5.2)(yaml@2.8.1))': dependencies: '@istanbuljs/schema': 0.1.3 '@jridgewell/gen-mapping': 0.3.13 @@ -6343,12 +6646,11 @@ snapshots: istanbul-lib-coverage: 3.2.2 istanbul-lib-instrument: 6.0.3 istanbul-lib-report: 3.0.1 - istanbul-lib-source-maps: 5.0.6 istanbul-reports: 3.2.0 - magicast: 0.5.1 + magicast: 0.5.2 obug: 2.1.1 tinyrainbow: 3.0.3 - vitest: 4.0.16(@types/node@24.5.2)(yaml@2.8.1) + vitest: 4.0.18(@types/node@24.5.2)(yaml@2.8.1) transitivePeerDependencies: - supports-color @@ -6361,34 +6663,34 @@ snapshots: chai: 6.2.1 tinyrainbow: 3.0.3 - '@vitest/expect@4.0.16': + '@vitest/expect@4.0.18': dependencies: '@standard-schema/spec': 1.0.0 '@types/chai': 5.2.3 - '@vitest/spy': 4.0.16 - '@vitest/utils': 4.0.16 + '@vitest/spy': 4.0.18 + '@vitest/utils': 4.0.18 chai: 6.2.1 tinyrainbow: 3.0.3 - '@vitest/mocker@4.0.10(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1))': + '@vitest/mocker@4.0.10(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1))': dependencies: '@vitest/spy': 4.0.10 estree-walker: 3.0.3 magic-string: 0.30.21 optionalDependencies: - vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) - '@vitest/mocker@4.0.10(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1))': + '@vitest/mocker@4.0.10(vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1))': dependencies: '@vitest/spy': 4.0.10 estree-walker: 3.0.3 magic-string: 0.30.21 optionalDependencies: - vite: 6.2.3(@types/node@24.5.2)(yaml@2.8.1) + vite: 6.0.15(@types/node@24.5.2)(yaml@2.8.1) - '@vitest/mocker@4.0.16(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1))': + '@vitest/mocker@4.0.18(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1))': dependencies: - '@vitest/spy': 4.0.16 + '@vitest/spy': 4.0.18 estree-walker: 3.0.3 magic-string: 0.30.21 optionalDependencies: @@ -6398,7 +6700,7 @@ snapshots: dependencies: tinyrainbow: 3.0.3 - '@vitest/pretty-format@4.0.16': + '@vitest/pretty-format@4.0.18': dependencies: tinyrainbow: 3.0.3 @@ -6407,9 +6709,9 @@ snapshots: '@vitest/utils': 4.0.10 pathe: 2.0.3 - '@vitest/runner@4.0.16': + '@vitest/runner@4.0.18': dependencies: - '@vitest/utils': 4.0.16 + '@vitest/utils': 4.0.18 pathe: 2.0.3 '@vitest/snapshot@4.0.10': @@ -6418,24 +6720,24 @@ snapshots: magic-string: 0.30.21 pathe: 2.0.3 - '@vitest/snapshot@4.0.16': + '@vitest/snapshot@4.0.18': dependencies: - '@vitest/pretty-format': 4.0.16 + '@vitest/pretty-format': 4.0.18 magic-string: 0.30.21 pathe: 2.0.3 '@vitest/spy@4.0.10': {} - '@vitest/spy@4.0.16': {} + '@vitest/spy@4.0.18': {} '@vitest/utils@4.0.10': dependencies: '@vitest/pretty-format': 4.0.10 tinyrainbow: 3.0.3 - '@vitest/utils@4.0.16': + '@vitest/utils@4.0.18': dependencies: - '@vitest/pretty-format': 4.0.16 + '@vitest/pretty-format': 4.0.18 tinyrainbow: 3.0.3 '@volar/language-core@2.4.11': @@ -6527,11 +6829,11 @@ snapshots: js-beautify: 1.15.4 vue-component-type-helpers: 2.2.12 - '@vueuse/core@12.8.2(typescript@5.6.3)': + '@vueuse/core@12.2.0(typescript@5.6.3)': dependencies: - '@types/web-bluetooth': 0.0.21 - '@vueuse/metadata': 12.8.2 - '@vueuse/shared': 12.8.2(typescript@5.6.3) + '@types/web-bluetooth': 0.0.20 + '@vueuse/metadata': 12.2.0 + '@vueuse/shared': 12.2.0(typescript@5.6.3) vue: 3.5.25(typescript@5.6.3) transitivePeerDependencies: - typescript @@ -6551,11 +6853,11 @@ snapshots: optionalDependencies: sortablejs: 1.15.6 - '@vueuse/metadata@12.8.2': {} + '@vueuse/metadata@12.2.0': {} '@vueuse/metadata@13.6.0': {} - '@vueuse/shared@12.8.2(typescript@5.6.3)': + '@vueuse/shared@12.2.0(typescript@5.6.3)': dependencies: vue: 3.5.25(typescript@5.6.3) transitivePeerDependencies: @@ -6744,7 +7046,7 @@ snapshots: base64-js@1.5.1: {} - baseline-browser-mapping@2.9.11: {} + baseline-browser-mapping@2.10.0: {} bcrypt-pbkdf@1.0.2: dependencies: @@ -6778,9 +7080,9 @@ snapshots: browserslist@4.28.1: dependencies: - baseline-browser-mapping: 2.9.11 - caniuse-lite: 1.0.30001761 - electron-to-chromium: 1.5.267 + baseline-browser-mapping: 2.10.0 + caniuse-lite: 1.0.30001775 + electron-to-chromium: 1.5.302 node-releases: 2.0.27 update-browserslist-db: 1.2.3(browserslist@4.28.1) @@ -6824,7 +7126,7 @@ snapshots: callsites@3.1.0: {} - caniuse-lite@1.0.30001761: {} + caniuse-lite@1.0.30001775: {} canonicalize@2.1.0: {} @@ -6978,6 +7280,10 @@ snapshots: de-indent@1.0.2: {} + debug@4.4.0: + dependencies: + ms: 2.1.3 + debug@4.4.3(supports-color@8.1.1): dependencies: ms: 2.1.3 @@ -7047,7 +7353,7 @@ snapshots: dependencies: jake: 10.9.2 - electron-to-chromium@1.5.267: {} + electron-to-chromium@1.5.302: {} emoji-regex@8.0.0: {} @@ -7075,6 +7381,34 @@ snapshots: es-toolkit@1.39.10: {} + esbuild@0.24.2: + optionalDependencies: + '@esbuild/aix-ppc64': 0.24.2 + '@esbuild/android-arm': 0.24.2 + '@esbuild/android-arm64': 0.24.2 + '@esbuild/android-x64': 0.24.2 + '@esbuild/darwin-arm64': 0.24.2 + '@esbuild/darwin-x64': 0.24.2 + '@esbuild/freebsd-arm64': 0.24.2 + '@esbuild/freebsd-x64': 0.24.2 + '@esbuild/linux-arm': 0.24.2 + '@esbuild/linux-arm64': 0.24.2 + '@esbuild/linux-ia32': 0.24.2 + '@esbuild/linux-loong64': 0.24.2 + '@esbuild/linux-mips64el': 0.24.2 + '@esbuild/linux-ppc64': 0.24.2 + '@esbuild/linux-riscv64': 0.24.2 + '@esbuild/linux-s390x': 0.24.2 + '@esbuild/linux-x64': 0.24.2 + '@esbuild/netbsd-arm64': 0.24.2 + '@esbuild/netbsd-x64': 0.24.2 + '@esbuild/openbsd-arm64': 0.24.2 + '@esbuild/openbsd-x64': 0.24.2 + '@esbuild/sunos-x64': 0.24.2 + '@esbuild/win32-arm64': 0.24.2 + '@esbuild/win32-ia32': 0.24.2 + '@esbuild/win32-x64': 0.24.2 + esbuild@0.25.1: optionalDependencies: '@esbuild/aix-ppc64': 0.25.1 @@ -7506,7 +7840,7 @@ snapshots: istanbul-lib-instrument@6.0.3: dependencies: - '@babel/core': 7.28.5 + '@babel/core': 7.29.0 '@babel/parser': 7.28.5 '@istanbuljs/schema': 0.1.3 istanbul-lib-coverage: 3.2.2 @@ -7520,14 +7854,6 @@ snapshots: make-dir: 4.0.0 supports-color: 7.2.0 - istanbul-lib-source-maps@5.0.6: - dependencies: - '@jridgewell/trace-mapping': 0.3.31 - debug: 4.4.3(supports-color@8.1.1) - istanbul-lib-coverage: 3.2.2 - transitivePeerDependencies: - - supports-color - istanbul-reports@3.2.0: dependencies: html-escaper: 2.0.2 @@ -7665,10 +7991,10 @@ snapshots: dependencies: '@jridgewell/sourcemap-codec': 1.5.5 - magicast@0.5.1: + magicast@0.5.2: dependencies: - '@babel/parser': 7.28.5 - '@babel/types': 7.28.5 + '@babel/parser': 7.29.0 + '@babel/types': 7.29.0 source-map-js: 1.2.1 make-dir@1.3.0: @@ -8316,7 +8642,7 @@ snapshots: cac: 6.7.14 chokidar: 4.0.3 consola: 3.4.2 - debug: 4.4.3(supports-color@8.1.1) + debug: 4.4.0 esbuild: 0.25.1 joycon: 3.1.1 picocolors: 1.1.1 @@ -8433,9 +8759,9 @@ snapshots: uuid@9.0.1: {} - vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1): + vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1): dependencies: - esbuild: 0.25.1 + esbuild: 0.24.2 postcss: 8.5.6 rollup: 4.37.0 optionalDependencies: @@ -8443,6 +8769,16 @@ snapshots: fsevents: 2.3.3 yaml: 2.8.1 + vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1): + dependencies: + esbuild: 0.24.2 + postcss: 8.5.6 + rollup: 4.37.0 + optionalDependencies: + '@types/node': 24.5.2 + fsevents: 2.3.3 + yaml: 2.8.1 + vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1): dependencies: esbuild: 0.25.1 @@ -8456,7 +8792,7 @@ snapshots: vitest@4.0.10(@types/node@20.16.15)(yaml@2.8.1): dependencies: '@vitest/expect': 4.0.10 - '@vitest/mocker': 4.0.10(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1)) + '@vitest/mocker': 4.0.10(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1)) '@vitest/pretty-format': 4.0.10 '@vitest/runner': 4.0.10 '@vitest/snapshot': 4.0.10 @@ -8473,7 +8809,7 @@ snapshots: tinyexec: 0.3.2 tinyglobby: 0.2.15 tinyrainbow: 3.0.3 - vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) why-is-node-running: 2.3.0 optionalDependencies: '@types/node': 20.16.15 @@ -8494,7 +8830,7 @@ snapshots: vitest@4.0.10(@types/node@24.5.2)(yaml@2.8.1): dependencies: '@vitest/expect': 4.0.10 - '@vitest/mocker': 4.0.10(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1)) + '@vitest/mocker': 4.0.10(vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1)) '@vitest/pretty-format': 4.0.10 '@vitest/runner': 4.0.10 '@vitest/snapshot': 4.0.10 @@ -8511,7 +8847,7 @@ snapshots: tinyexec: 0.3.2 tinyglobby: 0.2.15 tinyrainbow: 3.0.3 - vite: 6.2.3(@types/node@24.5.2)(yaml@2.8.1) + vite: 6.0.15(@types/node@24.5.2)(yaml@2.8.1) why-is-node-running: 2.3.0 optionalDependencies: '@types/node': 24.5.2 @@ -8529,15 +8865,15 @@ snapshots: - tsx - yaml - vitest@4.0.16(@types/node@24.5.2)(yaml@2.8.1): + vitest@4.0.18(@types/node@24.5.2)(yaml@2.8.1): dependencies: - '@vitest/expect': 4.0.16 - '@vitest/mocker': 4.0.16(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1)) - '@vitest/pretty-format': 4.0.16 - '@vitest/runner': 4.0.16 - '@vitest/snapshot': 4.0.16 - '@vitest/spy': 4.0.16 - '@vitest/utils': 4.0.16 + '@vitest/expect': 4.0.18 + '@vitest/mocker': 4.0.18(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1)) + '@vitest/pretty-format': 4.0.18 + '@vitest/runner': 4.0.18 + '@vitest/snapshot': 4.0.18 + '@vitest/spy': 4.0.18 + '@vitest/utils': 4.0.18 es-module-lexer: 1.7.0 expect-type: 1.2.2 magic-string: 0.30.21 diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml index d0559e9..5ba4571 100644 --- a/pnpm-workspace.yaml +++ b/pnpm-workspace.yaml @@ -14,37 +14,37 @@ catalog: '@platforma-sdk/tengo-builder': 2.4.8 '@platforma-sdk/workflow-tengo': 5.8.0 "@platforma-sdk/blocks-deps-updater": 2.0.0 - "@platforma-sdk/eslint-config": ^1.2.0 - '@platforma-sdk/package-builder': 3.10.7 + "@platforma-sdk/eslint-config": ~1.2.0 + '@platforma-sdk/package-builder': ~3.11.4 - '@platforma-open/milaboratories.runenv-python-3': ^1.7.5 - '@platforma-open/milaboratories.runenv-r-samples-and-data': ^1.0.1 + '@platforma-open/milaboratories.runenv-python-3': ~1.7.5 + '@platforma-open/milaboratories.runenv-r-samples-and-data': ~1.0.1 '@platforma-sdk/test': 1.51.3 '@milaboratories/helpers': 1.13.0 - 'vue': ^3.5.24 - 'vue-tsc': ^2.2.8 + 'vue': ~3.5.24 + 'vue-tsc': ~2.2.8 'zod': ~3.23.8 - 'radashi': ^12.7.0 - 'utility-types': ^3.11.0 + 'radashi': ~12.7.0 + 'utility-types': ~3.11.0 'typescript': ~5.6.3 'tsup': ~8.4.0 - 'turbo': ^2.6.1 + 'turbo': ~2.6.1 - 'vite': ^6.0.6 - 'vitest': ^4.0.10 - '@vitejs/plugin-vue': ^5.2.1 - 'vite-plugin-dts': ^4.3.0 - 'shx': ^0.4.0 + 'vite': ~6.0.6 + 'vitest': ~4.0.10 + '@vitejs/plugin-vue': ~5.2.1 + 'vite-plugin-dts': ~4.3.0 + 'shx': ~0.4.0 - '@vueuse/core': ^12.2.0 + '@vueuse/core': ~12.2.0 - 'ag-grid-enterprise': &ag-grid ^34.1.2 + 'ag-grid-enterprise': &ag-grid ~34.1.2 'ag-grid-vue3': *ag-grid - '@changesets/cli': ^2.29.7 + '@changesets/cli': ~2.29.7 '@types/node': ~20.16.15 From 6978a82667eb71e73c4dc34519c77f31481ccae5 Mon Sep 17 00:00:00 2001 From: Vitalii Popov Date: Mon, 2 Mar 2026 20:00:33 +0100 Subject: [PATCH 4/4] Fix version downgrades: bump @vueuse/core ~12.8.2, vite ~6.2.3 --- pnpm-lock.yaml | 377 ++++---------------------------------------- pnpm-workspace.yaml | 4 +- 2 files changed, 34 insertions(+), 347 deletions(-) diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 8debcfe..f47af58 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -52,8 +52,8 @@ catalogs: specifier: ~5.2.1 version: 5.2.3 '@vueuse/core': - specifier: ~12.2.0 - version: 12.2.0 + specifier: ~12.8.2 + version: 12.8.2 ag-grid-enterprise: specifier: ~34.1.2 version: 34.1.2 @@ -79,8 +79,8 @@ catalogs: specifier: ~3.11.0 version: 3.11.0 vite: - specifier: ~6.0.6 - version: 6.0.15 + specifier: ~6.2.3 + version: 6.2.3 vitest: specifier: ~4.0.10 version: 4.0.10 @@ -153,7 +153,7 @@ importers: version: 5.6.3 vite: specifier: 'catalog:' - version: 6.0.15(@types/node@24.5.2)(yaml@2.8.1) + version: 6.2.3(@types/node@24.5.2)(yaml@2.8.1) software/parse-h5ad: devDependencies: @@ -220,10 +220,10 @@ importers: version: 20.16.15 '@vitejs/plugin-vue': specifier: 'catalog:' - version: 5.2.3(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3)) + version: 5.2.3(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3)) '@vueuse/core': specifier: 'catalog:' - version: 12.2.0(typescript@5.6.3) + version: 12.8.2(typescript@5.6.3) ag-grid-enterprise: specifier: 'catalog:' version: 34.1.2 @@ -241,7 +241,7 @@ importers: version: 3.11.0 vite: specifier: 'catalog:' - version: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) + version: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) vitest: specifier: 'catalog:' version: 4.0.10(@types/node@20.16.15)(yaml@2.8.1) @@ -581,300 +581,150 @@ packages: '@dabh/diagnostics@2.0.3': resolution: {integrity: sha512-hrlQOIi7hAfzsMqlGSFyVucrx38O+j6wiGOf//H2ecvIEqYN4ADBSS2iLMh5UFyDunCNniUIPk/q3riFv45xRA==} - 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jiti: - optional: true - less: - optional: true - lightningcss: - optional: true - sass: - optional: true - sass-embedded: - optional: true - stylus: - optional: true - sugarss: - optional: true - terser: - optional: true - tsx: - optional: true - yaml: - optional: true - vite@6.2.3: resolution: {integrity: sha512-IzwM54g4y9JA/xAeBPNaDXiBF8Jsgl3VBQ2YQ/wOY6fyW3xMdSoltIV3Bo59DErdqdE6RxUfv8W69DvUorE4Eg==} engines: {node: ^18.0.0 || ^20.0.0 || >=22.0.0} @@ -4997,153 +4799,78 @@ snapshots: enabled: 2.0.0 kuler: 2.0.0 - '@esbuild/aix-ppc64@0.24.2': - optional: true - '@esbuild/aix-ppc64@0.25.1': optional: true - '@esbuild/android-arm64@0.24.2': - optional: true - '@esbuild/android-arm64@0.25.1': optional: true - '@esbuild/android-arm@0.24.2': - optional: true - '@esbuild/android-arm@0.25.1': optional: true - '@esbuild/android-x64@0.24.2': - optional: true - '@esbuild/android-x64@0.25.1': optional: true - '@esbuild/darwin-arm64@0.24.2': - optional: true - '@esbuild/darwin-arm64@0.25.1': optional: true - '@esbuild/darwin-x64@0.24.2': - optional: true - '@esbuild/darwin-x64@0.25.1': optional: true - '@esbuild/freebsd-arm64@0.24.2': - optional: true - '@esbuild/freebsd-arm64@0.25.1': optional: true - '@esbuild/freebsd-x64@0.24.2': - optional: true - '@esbuild/freebsd-x64@0.25.1': optional: true - '@esbuild/linux-arm64@0.24.2': - optional: true - '@esbuild/linux-arm64@0.25.1': optional: true - '@esbuild/linux-arm@0.24.2': - optional: true - '@esbuild/linux-arm@0.25.1': optional: true - '@esbuild/linux-ia32@0.24.2': - optional: true - '@esbuild/linux-ia32@0.25.1': optional: true - '@esbuild/linux-loong64@0.24.2': - optional: true - '@esbuild/linux-loong64@0.25.1': optional: true - '@esbuild/linux-mips64el@0.24.2': - optional: true - '@esbuild/linux-mips64el@0.25.1': optional: true - '@esbuild/linux-ppc64@0.24.2': - optional: true - '@esbuild/linux-ppc64@0.25.1': optional: true - '@esbuild/linux-riscv64@0.24.2': - optional: true - '@esbuild/linux-riscv64@0.25.1': optional: true - '@esbuild/linux-s390x@0.24.2': - optional: true - '@esbuild/linux-s390x@0.25.1': optional: true - '@esbuild/linux-x64@0.24.2': - optional: true - '@esbuild/linux-x64@0.25.1': optional: true - '@esbuild/netbsd-arm64@0.24.2': - optional: true - '@esbuild/netbsd-arm64@0.25.1': optional: true - '@esbuild/netbsd-x64@0.24.2': - optional: true - '@esbuild/netbsd-x64@0.25.1': optional: true - '@esbuild/openbsd-arm64@0.24.2': - optional: true - '@esbuild/openbsd-arm64@0.25.1': optional: true - '@esbuild/openbsd-x64@0.24.2': - optional: true - '@esbuild/openbsd-x64@0.25.1': optional: true - '@esbuild/sunos-x64@0.24.2': - optional: true - '@esbuild/sunos-x64@0.25.1': optional: true - '@esbuild/win32-arm64@0.24.2': - optional: true - '@esbuild/win32-arm64@0.25.1': optional: true - '@esbuild/win32-ia32@0.24.2': - optional: true - '@esbuild/win32-ia32@0.25.1': optional: true - '@esbuild/win32-x64@0.24.2': - optional: true - '@esbuild/win32-x64@0.25.1': optional: true @@ -6529,8 +6256,6 @@ snapshots: '@types/uuid@9.0.8': {} - '@types/web-bluetooth@0.0.20': {} - '@types/web-bluetooth@0.0.21': {} '@typescript-eslint/eslint-plugin@8.46.0(@typescript-eslint/parser@8.46.0(eslint@9.37.0)(typescript@5.6.3))(eslint@9.37.0)(typescript@5.6.3)': @@ -6633,9 +6358,9 @@ snapshots: transitivePeerDependencies: - supports-color - '@vitejs/plugin-vue@5.2.3(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3))': + '@vitejs/plugin-vue@5.2.3(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1))(vue@3.5.25(typescript@5.6.3))': dependencies: - vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) vue: 3.5.25(typescript@5.6.3) '@vitest/coverage-istanbul@4.0.18(vitest@4.0.18(@types/node@24.5.2)(yaml@2.8.1))': @@ -6672,21 +6397,21 @@ snapshots: chai: 6.2.1 tinyrainbow: 3.0.3 - '@vitest/mocker@4.0.10(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1))': + '@vitest/mocker@4.0.10(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1))': dependencies: '@vitest/spy': 4.0.10 estree-walker: 3.0.3 magic-string: 0.30.21 optionalDependencies: - vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) - '@vitest/mocker@4.0.10(vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1))': + '@vitest/mocker@4.0.10(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1))': dependencies: '@vitest/spy': 4.0.10 estree-walker: 3.0.3 magic-string: 0.30.21 optionalDependencies: - vite: 6.0.15(@types/node@24.5.2)(yaml@2.8.1) + vite: 6.2.3(@types/node@24.5.2)(yaml@2.8.1) '@vitest/mocker@4.0.18(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1))': dependencies: @@ -6829,11 +6554,11 @@ snapshots: js-beautify: 1.15.4 vue-component-type-helpers: 2.2.12 - '@vueuse/core@12.2.0(typescript@5.6.3)': + '@vueuse/core@12.8.2(typescript@5.6.3)': dependencies: - '@types/web-bluetooth': 0.0.20 - '@vueuse/metadata': 12.2.0 - '@vueuse/shared': 12.2.0(typescript@5.6.3) + '@types/web-bluetooth': 0.0.21 + '@vueuse/metadata': 12.8.2 + '@vueuse/shared': 12.8.2(typescript@5.6.3) vue: 3.5.25(typescript@5.6.3) transitivePeerDependencies: - typescript @@ -6853,11 +6578,11 @@ snapshots: optionalDependencies: sortablejs: 1.15.6 - '@vueuse/metadata@12.2.0': {} + '@vueuse/metadata@12.8.2': {} '@vueuse/metadata@13.6.0': {} - '@vueuse/shared@12.2.0(typescript@5.6.3)': + '@vueuse/shared@12.8.2(typescript@5.6.3)': dependencies: vue: 3.5.25(typescript@5.6.3) transitivePeerDependencies: @@ -7381,34 +7106,6 @@ snapshots: es-toolkit@1.39.10: {} - esbuild@0.24.2: - optionalDependencies: - '@esbuild/aix-ppc64': 0.24.2 - '@esbuild/android-arm': 0.24.2 - '@esbuild/android-arm64': 0.24.2 - '@esbuild/android-x64': 0.24.2 - '@esbuild/darwin-arm64': 0.24.2 - '@esbuild/darwin-x64': 0.24.2 - '@esbuild/freebsd-arm64': 0.24.2 - '@esbuild/freebsd-x64': 0.24.2 - '@esbuild/linux-arm': 0.24.2 - '@esbuild/linux-arm64': 0.24.2 - '@esbuild/linux-ia32': 0.24.2 - '@esbuild/linux-loong64': 0.24.2 - '@esbuild/linux-mips64el': 0.24.2 - '@esbuild/linux-ppc64': 0.24.2 - '@esbuild/linux-riscv64': 0.24.2 - '@esbuild/linux-s390x': 0.24.2 - '@esbuild/linux-x64': 0.24.2 - '@esbuild/netbsd-arm64': 0.24.2 - '@esbuild/netbsd-x64': 0.24.2 - '@esbuild/openbsd-arm64': 0.24.2 - '@esbuild/openbsd-x64': 0.24.2 - '@esbuild/sunos-x64': 0.24.2 - '@esbuild/win32-arm64': 0.24.2 - '@esbuild/win32-ia32': 0.24.2 - '@esbuild/win32-x64': 0.24.2 - esbuild@0.25.1: optionalDependencies: '@esbuild/aix-ppc64': 0.25.1 @@ -8759,9 +8456,9 @@ snapshots: uuid@9.0.1: {} - vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1): + vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1): dependencies: - esbuild: 0.24.2 + esbuild: 0.25.1 postcss: 8.5.6 rollup: 4.37.0 optionalDependencies: @@ -8769,16 +8466,6 @@ snapshots: fsevents: 2.3.3 yaml: 2.8.1 - vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1): - dependencies: - esbuild: 0.24.2 - postcss: 8.5.6 - rollup: 4.37.0 - optionalDependencies: - '@types/node': 24.5.2 - fsevents: 2.3.3 - yaml: 2.8.1 - vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1): dependencies: esbuild: 0.25.1 @@ -8792,7 +8479,7 @@ snapshots: vitest@4.0.10(@types/node@20.16.15)(yaml@2.8.1): dependencies: '@vitest/expect': 4.0.10 - '@vitest/mocker': 4.0.10(vite@6.0.15(@types/node@20.16.15)(yaml@2.8.1)) + '@vitest/mocker': 4.0.10(vite@6.2.3(@types/node@20.16.15)(yaml@2.8.1)) '@vitest/pretty-format': 4.0.10 '@vitest/runner': 4.0.10 '@vitest/snapshot': 4.0.10 @@ -8809,7 +8496,7 @@ snapshots: tinyexec: 0.3.2 tinyglobby: 0.2.15 tinyrainbow: 3.0.3 - vite: 6.0.15(@types/node@20.16.15)(yaml@2.8.1) + vite: 6.2.3(@types/node@20.16.15)(yaml@2.8.1) why-is-node-running: 2.3.0 optionalDependencies: '@types/node': 20.16.15 @@ -8830,7 +8517,7 @@ snapshots: vitest@4.0.10(@types/node@24.5.2)(yaml@2.8.1): dependencies: '@vitest/expect': 4.0.10 - '@vitest/mocker': 4.0.10(vite@6.0.15(@types/node@24.5.2)(yaml@2.8.1)) + '@vitest/mocker': 4.0.10(vite@6.2.3(@types/node@24.5.2)(yaml@2.8.1)) '@vitest/pretty-format': 4.0.10 '@vitest/runner': 4.0.10 '@vitest/snapshot': 4.0.10 @@ -8847,7 +8534,7 @@ snapshots: tinyexec: 0.3.2 tinyglobby: 0.2.15 tinyrainbow: 3.0.3 - vite: 6.0.15(@types/node@24.5.2)(yaml@2.8.1) + vite: 6.2.3(@types/node@24.5.2)(yaml@2.8.1) why-is-node-running: 2.3.0 optionalDependencies: '@types/node': 24.5.2 diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml index 5ba4571..c97fdc3 100644 --- a/pnpm-workspace.yaml +++ b/pnpm-workspace.yaml @@ -34,13 +34,13 @@ catalog: 'tsup': ~8.4.0 'turbo': ~2.6.1 - 'vite': ~6.0.6 + 'vite': ~6.2.3 'vitest': ~4.0.10 '@vitejs/plugin-vue': ~5.2.1 'vite-plugin-dts': ~4.3.0 'shx': ~0.4.0 - '@vueuse/core': ~12.2.0 + '@vueuse/core': ~12.8.2 'ag-grid-enterprise': &ag-grid ~34.1.2 'ag-grid-vue3': *ag-grid