Error apeared on many chromosomes, and no way to debug and find the variant of origin that caused this issue:
SHAPEIT5_phase_rare: src/containers/genotype_set/genotype_set_phasing.cpp:66: void genotype_set::phaseLiAndStephens(unsigned int, unsigned int, aligned_vector32<float>&, aligned_vector32<float>&, std::vector<unsigned int>&, float): Assertion '!isnan(GRvar_genotypes[vr][tidx].prob)' failed.
Error apeared on many chromosomes, and no way to debug and find the variant of origin that caused this issue:
SHAPEIT5_phase_rare: src/containers/genotype_set/genotype_set_phasing.cpp:66: void genotype_set::phaseLiAndStephens(unsigned int, unsigned int, aligned_vector32<float>&, aligned_vector32<float>&, std::vector<unsigned int>&, float): Assertion '!isnan(GRvar_genotypes[vr][tidx].prob)' failed.