Issues

• Clean up files in nextstrain-data

  nextstrain/tb#46 · Filter by author joverlee521 opened on Feb 9, 2026

• Consider changing get_year.py to read color schemes from external TSV file

  nextstrain/tb#44 · Filter by author kimandrews opened on Jan 15, 2026

• Add rules to upload build metadata + VCF

  nextstrain/tb#38 · Filter by author joverlee521 opened on Nov 10, 2025
  1

• Make the console output shorter and more informative

  enhancement
  nextstrain/tb#35 · Filter by author kimandrews opened on Oct 31, 2025

• Find best way to purge files from dynamic cache

  nextstrain/tb#33 · Filter by author kimandrews opened on Oct 29, 2025
  3

• Add metadata to dynamic cache

  nextstrain/tb#22 · Filter by author kimandrews opened on Sep 26, 2025

• Parse metadata to enable coloring by division

  enhancement
  nextstrain/tb#21 · Filter by author kimandrews opened on Sep 19, 2025
  1

• Downsample reads in large fastq files

  enhancement
  nextstrain/tb#20 · Filter by author kimandrews opened on Sep 19, 2025

• Add more QC steps

  enhancement
  nextstrain/tb#19 · Filter by author kimandrews opened on Sep 19, 2025

• Classify samples by drug-specific resistance with tbp-parser

  enhancement
  nextstrain/tb#18 · Filter by author kimandrews opened on Sep 18, 2025