diff --git a/swift/metrics/acc.py b/swift/metrics/acc.py
index e513d285bc..98b2b35767 100644
--- a/swift/metrics/acc.py
+++ b/swift/metrics/acc.py
@@ -34,7 +34,8 @@ def compute_acc(preds,
             # padding_free
             for i in range(cu_seqlens.shape[0] - 1):
                 start, end = cu_seqlens[i], cu_seqlens[i + 1]
-                acc_list.append(np.all(preds[0, start:end] == labels[0, start:end]))
+                mask = masks[0, start:end]
+                acc_list.append(np.all(preds[0, start:end][mask] == labels[0, start:end][mask]))
         else:
             for i, m in enumerate(masks):
                 acc_list.append(np.all(preds[i, m] == labels[i, m]))
diff --git a/tests/utils/test_acc_metrics.py b/tests/utils/test_acc_metrics.py
new file mode 100644
index 0000000000..e49a42cb68
--- /dev/null
+++ b/tests/utils/test_acc_metrics.py
@@ -0,0 +1,32 @@
+import torch
+import unittest
+
+from swift.metrics import compute_acc
+
+# Two sequences, each two prompt tokens (label -100) followed by two response tokens.
+# The prediction at position i is the guess for token i + 1, so the first sequence is
+# answered correctly and the second one gets its final token wrong.
+PACKED_LABELS = torch.tensor([[-100, -100, 5, 6, -100, -100, 7, 8]])
+PACKED_PREDS = torch.tensor([[0, 5, 6, 0, 0, 7, 9, 0]])
+CU_SEQLENS = torch.tensor([0, 4, 8])
+
+BATCH_LABELS = torch.tensor([[-100, -100, 5, 6], [-100, -100, 7, 8]])
+BATCH_PREDS = torch.tensor([[0, 5, 6, 0], [0, 7, 9, 0]])
+
+
+class TestComputeAcc(unittest.TestCase):
+
+    def test_padding_free_seq_acc_skips_ignored_labels(self):
+        metrics = compute_acc(PACKED_PREDS, PACKED_LABELS, acc_strategy='seq', cu_seqlens=CU_SEQLENS)
+
+        self.assertEqual([bool(acc) for acc in metrics['seq_acc']], [True, False])
+
+    def test_padding_free_seq_acc_matches_the_padded_batch(self):
+        packed = compute_acc(PACKED_PREDS, PACKED_LABELS, acc_strategy='seq', cu_seqlens=CU_SEQLENS)
+        padded = compute_acc(BATCH_PREDS, BATCH_LABELS, acc_strategy='seq')
+
+        self.assertEqual([bool(acc) for acc in packed['seq_acc']], [bool(acc) for acc in padded['seq_acc']])
+
+
+if __name__ == '__main__':
+    unittest.main()