diff --git a/midas-data.owl b/midas-data.owl index 10dfc78..4044e08 100644 --- a/midas-data.owl +++ b/midas-data.owl @@ -17,11 +17,11 @@ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" xmlns:apollo_sv="http://purl.obolibrary.org/obo/apollo_sv.owl/"> - + An ontology of midas data types. https://creativecommons.org/licenses/by/4.0/ Testing automated release process by editing the midas-data-edit.owl file. - 2026-05-19 + 2026-07-08 @@ -310,6 +310,12 @@ + + + + + + @@ -361,10 +367,26 @@ + + + + + Practices involved in preventing the transmission of diseases by hand. + Hand Hygiene + + + + - + + + + + + + An action specification giving the number of vaccinations possible in a population during a specific time interval. Vaccination Capacity The counts of individuals that could be vaccinated in a population location per time step unit in the absence of any vaccine supply constraints. It represents the capacity of medical system to vaccinate individuals. @@ -390,10 +412,37 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + A plan specification whose objective specification is an infectious disease control objective specification. + Control Strategy + A plan with the goal of preventing or mitigating the effects of infections in a population due to one or more pathogens. + InfectiousDiseaseControlMeasure + The essential goal of an infectious disease control strategy is to protect the susceptible organisms in a population. + infectious disease control strategy + + + + + + + + + A place closure control strategy whose action specification is realized in a school closure process. + School Closure + A control measure in which schools are closed in an attempt to reduce transmission of disease. + SchoolClosureControlStrategy + school closure control strategy + + + + - + A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen. Mathias Brochhausen Vaccination @@ -430,6 +479,67 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + + + + + + A census about a particular medical treatment of a population. + Treatment Census + A census of a population that determines for a particular treatment whether each organism in the population has undergone that treatment. + PopulationTreatmentCensus + population treatment census + + + + + + + + + A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders. + William R. Hogan + Border Control + A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders. + BorderControlMeasure + border control strategy + + + + + + + + + An infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open. + William R. Hogan + Place Closure + An infectious disease control strategy that attempts to prevent infection of susceptible host organisms in a population by preventing potentially infectious contacts (for a particular pathogen) among the organisms in the population. + PlaceClosureControlMeasure + place closure control strategy + + + + + + + + + A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one ecosystem to another ecosystem + William R. Hogan + Travel Restriction + A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one geographical region to another + TravelRestrictionControlMeasure + travel restriction control strategy + + + + @@ -456,6 +566,34 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + A place-closure control strategy that decides on a case-by-case basis whether to close places of a certain type, as opposed to blanket policy that closes all places of a certain type at the same time. + Close Individual Places + A place-closure control strategy that decides on a case-by-case basis whether to close places of a certain type, as opposed to blanket policy that closes all places of a certain type at the same time. + closeIndividualPlacesIndependently + close individual places independently strategy + + + + + + + + + An infectious disease control strategy that has a vector control action specification as part. + William R. Hogan + Vector Control + An infectious disease control strategy that attempts to reduce infections in a population of a particular host species by limiting infection acquisitions from a second host species, called the 'vector'. + VectorControlMeasure + Typically, the strategy is to limit the population of the second host species, which is called the "vector" for the infection. + vector control strategy + + + + @@ -466,6 +604,20 @@ While in many pieces of fiction the order in which the purely intentional entiti Treatment with a drug. DrugTreatment drug treatment + true + + + + + + + + + An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts. + William R. Hogan + An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts. + VoluntaryHouseholdQuarantineControlMeasure + voluntary household quarantine control strategy @@ -485,6 +637,34 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + infectious disease control strategy to prevent infection acquisition by individuals traveling from one ecosystem to another ecosystem + An infectious disease control strategy that has an objective specification of preventing infection acquisition by organisms traveling from one ecosystem to another ecosystem. + William R. Hogan + Travel-related Control Strategy + An infectious disease control strategy that has an objective specification of preventing infection acquisition by organisms traveling from one ecosystem to another ecosystem. + travel-related infectious disease control strategy + + + + + + + + + travel recommendation infectious disease control strategy + A travel-related infectious disease control strategy that has an action specification that is realized by making recommendations to travelers to either (1) avoid travel to an ecosystem with an ongoing infection such as an epidemic, (2) take precautions when traveling to such an ecosystem, (3) receive certain vaccinations prior to traveling to such an ecosystem, or (4) take certain medications when traveling to such an ecosystem + William R. Hogan + Travel Recommendation + A travel-related infectious disease control strategy that recommends to travelers to either (1) avoid travel to a region with an ongoing infection such as an epidemic, (2) take precautions when traveling to such a region, (3) receive certain vaccinations prior to traveling to such a region, or (4) take certain medications when traveling to such a region + travel recommendation control strategy + + + + @@ -515,6 +695,20 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + An infectious disease control strategy that identifies and treats contacted organisms in a host population. + Matthew Diller + William R. Hogan + Contact Tracing + An infectious disease control strategy that identifies and treats contacted organisms in a host population. + contact tracing + + + + @@ -612,10 +806,16 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + infectious disease control strategy census A census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem. William R. Hogan - Control Strategy + Control Strategy Census control strategy census @@ -625,10 +825,16 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + school closure infectious disease control strategy census An infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region. William R. Hogan - School Closure + School Closure Census This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere. school closure control strategy census @@ -638,7 +844,13 @@ While in many pieces of fiction the order in which the purely intentional entiti - + + + + + + + population vaccination census vaccine / immunization registry data, vaccination / immunization records extracted from an EHR A population treatment census that is about one or more vaccinations of organisms in a population. @@ -667,7 +879,13 @@ While in many pieces of fiction the order in which the purely intentional entiti - + + + + + + + census of supplies of vaccine products A control strategy inventory census that counts available vaccine doses of one or more similar vaccines. William R. Hogan @@ -685,6 +903,12 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + + census of facilities that conduct clinical laboratory tests A census of facilities that conduct clinical laboratory testing. William R. Hogan @@ -700,6 +924,12 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + + laboratory testing capacity action specification An action specification giving the number of laboratory tests of a certain type that it is possible to perform in a given population during a specific time interval. William R. Hogan @@ -747,6 +977,19 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + A place closure control strategy in which only selected places in a geographical region are permitted to stay open and travel is permitted only for people employed by certain organizations. + Matthew Diller + Lockdown + The places that are allowed to stay open are typically selected by the local or state government, and often include hospitals, many healthcare facilities, food stores and food banks, and law enforcement and emergency services. + lockdown infectious disease control measure + + + + @@ -795,6 +1038,7 @@ By "similar vaccines" we typically mean same pathogen, but could be si William R. Hogan Nirsevimab Vaccination vaccination with nirsevimab + true @@ -3002,6 +3246,36 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + The practice of keeping a safe space between yourself and other people. + Social Distancing + + + + + + + + + A barrier device that covers the nose and mouth, used in infection control. + Protective Face Mask + + + + + + + + + Masks, shields, gloves, gowns, boots, or other equipment used to provide coverage against infectious agents or environmental hazards. + Personal Protective Equipment + + + + @@ -3064,6 +3338,27 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + A test whose operational purpose is to determine the presence or absence of a substance, organism, or condition. + Screening Test + + + + + + + + + + Public communication via television, radio, newspapers, pamphlets, telephone, and other media to influence health or social behaviors. + Media Campaign + + + + @@ -3094,6 +3389,26 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + An antibody produced by a clone or genetically homogenous fast-growing cells i.e., hybridoma. Hybridoma cells are cloned to establish cell lines producing a specific antibody that is chemically and immunologically homogeneous. They are widely used in cancer detection, diagnosis, and treatment. + Monoclonal Antibody + + + + + + + + + A pharmacological agent that can kill or prevent the reproduction of infectious organisms. + Anti-Infective Agent + + + + @@ -3104,6 +3419,17 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + Medical care intended to treat or cure a condition or lessen its symptoms. This includes the administration of drugs, surgical procedures, physical or psychotherapy, or the use of therapeutic devices. + Treatment + Therapeutic Procedure + + + + @@ -3134,6 +3460,16 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + Place into enforced isolation. + Quarantine + + + + @@ -3531,6 +3867,40 @@ last accessed: 14/01/2014 + + + + + + + + + + + a population treatment census that is about one or more monoclonal antibodies administrations of organisms in a population + Monoclonal Antibody Administration + monoclonal antibody administration census + + + + + + + + + + + + + + + a population treatment census that is about one or more anti-infective administrations of organisms in a population + Anti-infective Administration + anti-infective administration census + + + + @@ -3877,7 +4247,7 @@ last accessed: 14/01/2014 - + Events that were cancelled due to an outbreak Event Cancellations event cancellations @@ -3970,7 +4340,7 @@ last accessed: 14/01/2014 - + Aggregate descriptions of multiple factors invovling susceptibility to outbreaks Risk Factors risk factors @@ -4040,7 +4410,7 @@ last accessed: 14/01/2014 - + Reports of policy violations Regulatory Complaints regulatory complaints @@ -4390,7 +4760,7 @@ last accessed: 14/01/2014 - + A range of activities focused on preventing, managing, and mitigating health issues in wild animal populations, including disease prevention, public health considerations, etc. Wildlife Health Interventions diff --git a/src/ontology/imports/apollo-sv_import.owl.zip b/src/ontology/imports/apollo-sv_import.owl.zip index d98ed72..3726609 100644 Binary files a/src/ontology/imports/apollo-sv_import.owl.zip and b/src/ontology/imports/apollo-sv_import.owl.zip differ diff --git a/src/ontology/imports/mondo_import.owl.zip b/src/ontology/imports/mondo_import.owl.zip index b325f88..aea1530 100644 Binary files a/src/ontology/imports/mondo_import.owl.zip and b/src/ontology/imports/mondo_import.owl.zip differ diff --git a/src/ontology/imports/ncbitaxon_import.owl.zip b/src/ontology/imports/ncbitaxon_import.owl.zip index 377991e..acbc5a6 100644 Binary files a/src/ontology/imports/ncbitaxon_import.owl.zip and b/src/ontology/imports/ncbitaxon_import.owl.zip differ diff --git a/src/ontology/imports/ncit_import.owl.zip b/src/ontology/imports/ncit_import.owl.zip index 92265a6..6bfcfad 100644 Binary files a/src/ontology/imports/ncit_import.owl.zip and b/src/ontology/imports/ncit_import.owl.zip differ diff --git a/src/ontology/imports/seed.txt b/src/ontology/imports/seed.txt index 89bde34..c5249c5 100644 --- a/src/ontology/imports/seed.txt +++ b/src/ontology/imports/seed.txt @@ -41,6 +41,20 @@ APOLLO_SV:00000064 APOLLO_SV:00000617 APOLLO_SV:00000497 APOLLO_SV:00000628 +APOLLO_SV:00000550 +APOLLO_SV:00000229 +APOLLO_SV:00000286 +APOLLO_SV:00000621 +APOLLO_SV:00000322 +APOLLO_SV:00000486 +APOLLO_SV:00000228 +APOLLO_SV:00000231 +APOLLO_SV:00000487 +APOLLO_SV:00000123 +APOLLO_SV:00000187 +APOLLO_SV:00000308 +APOLLO_SV:00000142 +APOLLO_SV:00000086 NCBITaxon:2 NCBITaxon:11676 NCBITaxon:666 @@ -93,6 +107,7 @@ NCBITaxon:2697049 NCBITaxon:10255 NCBITaxon:11089 NCBITaxon:12059 +NCBITaxon:36469 NCBITaxon:7147 NCBITaxon:7393 NCBITaxon:7198 @@ -185,4 +200,13 @@ NCIT:C171586 NCIT:C15719 NCIT:C173755 NCIT:C14419 +NCIT:C18227 +NCIT:C173748 +NCIT:C173747 +NCIT:C71902 +NCIT:C181548 +NCIT:C173636 +NCIT:C49236 +NCIT:C20401 +NCIT:C254 IAO:0000115 \ No newline at end of file diff --git a/src/ontology/midas-data-edit.owl b/src/ontology/midas-data-edit.owl index edc821c..6413318 100644 --- a/src/ontology/midas-data-edit.owl +++ b/src/ontology/midas-data-edit.owl @@ -269,6 +269,12 @@ + + + + + + @@ -320,10 +326,26 @@ + + + + + Practices involved in preventing the transmission of diseases by hand. + Hand Hygiene + + + + - + + + + + + + Vaccination Capacity @@ -338,10 +360,28 @@ + + + + + Control Strategy + + + + + + + + + School Closure + + + + - + Vaccination @@ -365,6 +405,48 @@ + + + + + + + + + + + Treatment Census + + + + + + + + + Border Control + + + + + + + + + Place Closure + + + + + + + + + Travel Restriction + + + + @@ -383,11 +465,38 @@ + + + + + Close Individual Places + + + + + + + + + Vector Control + + + + Drug Treatment + true + + + + + + + + @@ -401,6 +510,24 @@ + + + + + Travel-related Control Strategy + + + + + + + + + Travel Recommendation + + + + @@ -419,6 +546,15 @@ + + + + + Contact Tracing + + + + @@ -478,7 +614,13 @@ - Control Strategy + + + + + + + Control Strategy Census @@ -487,7 +629,13 @@ - School Closure + + + + + + + School Closure Census @@ -495,7 +643,13 @@ - + + + + + + + Vaccination Administration @@ -513,7 +667,13 @@ - + + + + + + + Vaccination Supplies @@ -523,6 +683,12 @@ + + + + + + Laboratory Testing Facility @@ -532,6 +698,12 @@ + + + + + + Laboratory Testing Capacity @@ -564,6 +736,15 @@ + + + + + Lockdown + + + + @@ -596,6 +777,7 @@ Nirsevimab Vaccination + true @@ -2555,6 +2737,30 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + + + + + + + + + + + + + + + + + + + + @@ -2605,6 +2811,22 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + + + + + + + + + + + + @@ -2629,6 +2851,22 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + + + + + + + + + + + + @@ -2637,6 +2875,15 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + Treatment + + + + @@ -2661,6 +2908,14 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + + + + @@ -3056,6 +3311,40 @@ last accessed: 14/01/2014 + + + + + + + + + + + a population treatment census that is about one or more monoclonal antibodies administrations of organisms in a population + Monoclonal Antibody Administration + monoclonal antibody administration census + + + + + + + + + + + + + + + a population treatment census that is about one or more anti-infective administrations of organisms in a population + Anti-infective Administration + anti-infective administration census + + + + @@ -3401,7 +3690,7 @@ last accessed: 14/01/2014 - + Events that were cancelled due to an outbreak Event Cancellations event cancellations @@ -3493,8 +3782,8 @@ last accessed: 14/01/2014 - - Aggregate descriptions of multiple factors invovling susceptibility to outbreaks + + Aggregate descriptions of multiple factors involving susceptibility to outbreaks Risk Factors risk factors @@ -3563,7 +3852,7 @@ last accessed: 14/01/2014 - + Reports of policy violations Regulatory Complaints regulatory complaints @@ -3912,7 +4201,7 @@ last accessed: 14/01/2014 - + A range of activities focused on preventing, managing, and mitigating health issues in wild animal populations, including disease prevention, public health considerations, etc. Wildlife Health Interventions diff --git a/src/ontology/midas-data.owl b/src/ontology/midas-data.owl index 10dfc78..4044e08 100644 --- a/src/ontology/midas-data.owl +++ b/src/ontology/midas-data.owl @@ -17,11 +17,11 @@ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" xmlns:apollo_sv="http://purl.obolibrary.org/obo/apollo_sv.owl/"> - + An ontology of midas data types. https://creativecommons.org/licenses/by/4.0/ Testing automated release process by editing the midas-data-edit.owl file. - 2026-05-19 + 2026-07-08 @@ -310,6 +310,12 @@ + + + + + + @@ -361,10 +367,26 @@ + + + + + Practices involved in preventing the transmission of diseases by hand. + Hand Hygiene + + + + - + + + + + + + An action specification giving the number of vaccinations possible in a population during a specific time interval. Vaccination Capacity The counts of individuals that could be vaccinated in a population location per time step unit in the absence of any vaccine supply constraints. It represents the capacity of medical system to vaccinate individuals. @@ -390,10 +412,37 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + A plan specification whose objective specification is an infectious disease control objective specification. + Control Strategy + A plan with the goal of preventing or mitigating the effects of infections in a population due to one or more pathogens. + InfectiousDiseaseControlMeasure + The essential goal of an infectious disease control strategy is to protect the susceptible organisms in a population. + infectious disease control strategy + + + + + + + + + A place closure control strategy whose action specification is realized in a school closure process. + School Closure + A control measure in which schools are closed in an attempt to reduce transmission of disease. + SchoolClosureControlStrategy + school closure control strategy + + + + - + A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen. Mathias Brochhausen Vaccination @@ -430,6 +479,67 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + + + + + + A census about a particular medical treatment of a population. + Treatment Census + A census of a population that determines for a particular treatment whether each organism in the population has undergone that treatment. + PopulationTreatmentCensus + population treatment census + + + + + + + + + A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders. + William R. Hogan + Border Control + A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders. + BorderControlMeasure + border control strategy + + + + + + + + + An infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open. + William R. Hogan + Place Closure + An infectious disease control strategy that attempts to prevent infection of susceptible host organisms in a population by preventing potentially infectious contacts (for a particular pathogen) among the organisms in the population. + PlaceClosureControlMeasure + place closure control strategy + + + + + + + + + A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one ecosystem to another ecosystem + William R. Hogan + Travel Restriction + A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one geographical region to another + TravelRestrictionControlMeasure + travel restriction control strategy + + + + @@ -456,6 +566,34 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + A place-closure control strategy that decides on a case-by-case basis whether to close places of a certain type, as opposed to blanket policy that closes all places of a certain type at the same time. + Close Individual Places + A place-closure control strategy that decides on a case-by-case basis whether to close places of a certain type, as opposed to blanket policy that closes all places of a certain type at the same time. + closeIndividualPlacesIndependently + close individual places independently strategy + + + + + + + + + An infectious disease control strategy that has a vector control action specification as part. + William R. Hogan + Vector Control + An infectious disease control strategy that attempts to reduce infections in a population of a particular host species by limiting infection acquisitions from a second host species, called the 'vector'. + VectorControlMeasure + Typically, the strategy is to limit the population of the second host species, which is called the "vector" for the infection. + vector control strategy + + + + @@ -466,6 +604,20 @@ While in many pieces of fiction the order in which the purely intentional entiti Treatment with a drug. DrugTreatment drug treatment + true + + + + + + + + + An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts. + William R. Hogan + An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts. + VoluntaryHouseholdQuarantineControlMeasure + voluntary household quarantine control strategy @@ -485,6 +637,34 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + infectious disease control strategy to prevent infection acquisition by individuals traveling from one ecosystem to another ecosystem + An infectious disease control strategy that has an objective specification of preventing infection acquisition by organisms traveling from one ecosystem to another ecosystem. + William R. Hogan + Travel-related Control Strategy + An infectious disease control strategy that has an objective specification of preventing infection acquisition by organisms traveling from one ecosystem to another ecosystem. + travel-related infectious disease control strategy + + + + + + + + + travel recommendation infectious disease control strategy + A travel-related infectious disease control strategy that has an action specification that is realized by making recommendations to travelers to either (1) avoid travel to an ecosystem with an ongoing infection such as an epidemic, (2) take precautions when traveling to such an ecosystem, (3) receive certain vaccinations prior to traveling to such an ecosystem, or (4) take certain medications when traveling to such an ecosystem + William R. Hogan + Travel Recommendation + A travel-related infectious disease control strategy that recommends to travelers to either (1) avoid travel to a region with an ongoing infection such as an epidemic, (2) take precautions when traveling to such a region, (3) receive certain vaccinations prior to traveling to such a region, or (4) take certain medications when traveling to such a region + travel recommendation control strategy + + + + @@ -515,6 +695,20 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + An infectious disease control strategy that identifies and treats contacted organisms in a host population. + Matthew Diller + William R. Hogan + Contact Tracing + An infectious disease control strategy that identifies and treats contacted organisms in a host population. + contact tracing + + + + @@ -612,10 +806,16 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + infectious disease control strategy census A census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem. William R. Hogan - Control Strategy + Control Strategy Census control strategy census @@ -625,10 +825,16 @@ While in many pieces of fiction the order in which the purely intentional entiti + + + + + + school closure infectious disease control strategy census An infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region. William R. Hogan - School Closure + School Closure Census This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere. school closure control strategy census @@ -638,7 +844,13 @@ While in many pieces of fiction the order in which the purely intentional entiti - + + + + + + + population vaccination census vaccine / immunization registry data, vaccination / immunization records extracted from an EHR A population treatment census that is about one or more vaccinations of organisms in a population. @@ -667,7 +879,13 @@ While in many pieces of fiction the order in which the purely intentional entiti - + + + + + + + census of supplies of vaccine products A control strategy inventory census that counts available vaccine doses of one or more similar vaccines. William R. Hogan @@ -685,6 +903,12 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + + census of facilities that conduct clinical laboratory tests A census of facilities that conduct clinical laboratory testing. William R. Hogan @@ -700,6 +924,12 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + + laboratory testing capacity action specification An action specification giving the number of laboratory tests of a certain type that it is possible to perform in a given population during a specific time interval. William R. Hogan @@ -747,6 +977,19 @@ By "similar vaccines" we typically mean same pathogen, but could be si + + + + + A place closure control strategy in which only selected places in a geographical region are permitted to stay open and travel is permitted only for people employed by certain organizations. + Matthew Diller + Lockdown + The places that are allowed to stay open are typically selected by the local or state government, and often include hospitals, many healthcare facilities, food stores and food banks, and law enforcement and emergency services. + lockdown infectious disease control measure + + + + @@ -795,6 +1038,7 @@ By "similar vaccines" we typically mean same pathogen, but could be si William R. Hogan Nirsevimab Vaccination vaccination with nirsevimab + true @@ -3002,6 +3246,36 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + The practice of keeping a safe space between yourself and other people. + Social Distancing + + + + + + + + + A barrier device that covers the nose and mouth, used in infection control. + Protective Face Mask + + + + + + + + + Masks, shields, gloves, gowns, boots, or other equipment used to provide coverage against infectious agents or environmental hazards. + Personal Protective Equipment + + + + @@ -3064,6 +3338,27 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + A test whose operational purpose is to determine the presence or absence of a substance, organism, or condition. + Screening Test + + + + + + + + + + Public communication via television, radio, newspapers, pamphlets, telephone, and other media to influence health or social behaviors. + Media Campaign + + + + @@ -3094,6 +3389,26 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + An antibody produced by a clone or genetically homogenous fast-growing cells i.e., hybridoma. Hybridoma cells are cloned to establish cell lines producing a specific antibody that is chemically and immunologically homogeneous. They are widely used in cancer detection, diagnosis, and treatment. + Monoclonal Antibody + + + + + + + + + A pharmacological agent that can kill or prevent the reproduction of infectious organisms. + Anti-Infective Agent + + + + @@ -3104,6 +3419,17 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + Medical care intended to treat or cure a condition or lessen its symptoms. This includes the administration of drugs, surgical procedures, physical or psychotherapy, or the use of therapeutic devices. + Treatment + Therapeutic Procedure + + + + @@ -3134,6 +3460,16 @@ agent seroprevalence will depend on a type of infectious agent and a population. + + + + + Place into enforced isolation. + Quarantine + + + + @@ -3531,6 +3867,40 @@ last accessed: 14/01/2014 + + + + + + + + + + + a population treatment census that is about one or more monoclonal antibodies administrations of organisms in a population + Monoclonal Antibody Administration + monoclonal antibody administration census + + + + + + + + + + + + + + + a population treatment census that is about one or more anti-infective administrations of organisms in a population + Anti-infective Administration + anti-infective administration census + + + + @@ -3877,7 +4247,7 @@ last accessed: 14/01/2014 - + Events that were cancelled due to an outbreak Event Cancellations event cancellations @@ -3970,7 +4340,7 @@ last accessed: 14/01/2014 - + Aggregate descriptions of multiple factors invovling susceptibility to outbreaks Risk Factors risk factors @@ -4040,7 +4410,7 @@ last accessed: 14/01/2014 - + Reports of policy violations Regulatory Complaints regulatory complaints @@ -4390,7 +4760,7 @@ last accessed: 14/01/2014 - + A range of activities focused on preventing, managing, and mitigating health issues in wild animal populations, including disease prevention, public health considerations, etc. Wildlife Health Interventions diff --git a/src/ontology/mirror/apollo-sv.owl.zip b/src/ontology/mirror/apollo-sv.owl.zip index 7edd617..f9f9477 100644 Binary files a/src/ontology/mirror/apollo-sv.owl.zip and b/src/ontology/mirror/apollo-sv.owl.zip differ diff --git a/src/ontology/mirror/mondo.owl.zip b/src/ontology/mirror/mondo.owl.zip index e8584df..9f5f4c3 100644 Binary files a/src/ontology/mirror/mondo.owl.zip and b/src/ontology/mirror/mondo.owl.zip differ diff --git a/src/ontology/mirror/ncbitaxon.owl.zip b/src/ontology/mirror/ncbitaxon.owl.zip index a0077fd..dfd6fab 100644 Binary files a/src/ontology/mirror/ncbitaxon.owl.zip and b/src/ontology/mirror/ncbitaxon.owl.zip differ diff --git a/src/ontology/mirror/ncit.owl.zip b/src/ontology/mirror/ncit.owl.zip index 79bf60b..290a349 100644 Binary files a/src/ontology/mirror/ncit.owl.zip and b/src/ontology/mirror/ncit.owl.zip differ