diff --git a/crystal_toolkit/components/localenv.py b/crystal_toolkit/components/localenv.py
index 2620d5eb..52e7694d 100644
--- a/crystal_toolkit/components/localenv.py
+++ b/crystal_toolkit/components/localenv.py
@@ -810,7 +810,7 @@ def get_valences(struct):
                     [struct[index], *lse.neighbors_sets[index][0].neighb_sites]
                 )
                 mol = mol.get_centered_molecule()
-                mg = MoleculeGraph.with_empty_graph(molecule=mol)
+                mg = MoleculeGraph.from_empty_graph(molecule=mol)
                 for i in range(1, len(mol)):
                     mg.add_edge(0, i)
 
diff --git a/crystal_toolkit/components/structure.py b/crystal_toolkit/components/structure.py
index 84f4a7b4..b6e67ec4 100644
--- a/crystal_toolkit/components/structure.py
+++ b/crystal_toolkit/components/structure.py
@@ -996,19 +996,19 @@ def _preprocess_input_to_graph(
                 with warnings.catch_warnings():
                     warnings.simplefilter("ignore")
                     if isinstance(input, Structure):
-                        graph = StructureGraph.with_local_env_strategy(
+                        graph = StructureGraph.from_local_env_strategy(
                             input, bonding_strategy
                         )
                     else:
-                        graph = MoleculeGraph.with_local_env_strategy(
+                        graph = MoleculeGraph.from_local_env_strategy(
                             input, bonding_strategy, reorder=False
                         )
             except Exception:
                 # for some reason computing bonds failed, so let's not have any bonds(!)
                 if isinstance(input, Structure):
-                    graph = StructureGraph.with_empty_graph(input)
+                    graph = StructureGraph.from_empty_graph(input)
                 else:
-                    graph = MoleculeGraph.with_empty_graph(input)
+                    graph = MoleculeGraph.from_empty_graph(input)
 
         return graph
 
diff --git a/crystal_toolkit/renderables/moleculegraph.py b/crystal_toolkit/renderables/moleculegraph.py
index 53a22e94..f425b8db 100644
--- a/crystal_toolkit/renderables/moleculegraph.py
+++ b/crystal_toolkit/renderables/moleculegraph.py
@@ -40,7 +40,7 @@ def get_molecule_graph_scene(
         A Molecule Graph scene.
     """
     if visualize_bond_orders:
-        vis_mol_graph = MoleculeGraph.with_local_env_strategy(
+        vis_mol_graph = MoleculeGraph.from_local_env_strategy(
             self.molecule, OpenBabelNN()
         )
     else: