hello,
I just ran some RNASeq data with ImRep. Compared with TRUST and mixcr. Thanks to your wonderful work, this program runs really fast!
But when I tried to the the compare.repertories.py, I found some bugs. In the function file2dict, after the linereader=csv.reader(file), I guess we still need next(reader) to skip the header line. Also the filenames of outputs of clonality.py don't have samplenames( I ran the script directly in terminal), so it will be unnecessary to add the sample's name when get the filenames from the clonality result folder. I just removed these parts and the script works smoothly. I hope this feedback can be helpful. ^_^
hello,
I just ran some RNASeq data with ImRep. Compared with TRUST and mixcr. Thanks to your wonderful work, this program runs really fast!
But when I tried to the the compare.repertories.py, I found some bugs. In the function file2dict, after the line
reader=csv.reader(file), I guess we still neednext(reader)to skip the header line. Also the filenames of outputs of clonality.py don't have samplenames( I ran the script directly in terminal), so it will be unnecessary to add the sample's name when get the filenames from the clonality result folder. I just removed these parts and the script works smoothly. I hope this feedback can be helpful. ^_^