diff --git a/docs/af1/af1.1.ipynb b/docs/af1/af1.1.ipynb index f287593..c72cb86 100644 --- a/docs/af1/af1.1.ipynb +++ b/docs/af1/af1.1.ipynb @@ -8,7 +8,7 @@ "source": [ "# Af1.1\n", "\n", - "The **[Af1.1](af1.1): _Anopheles funestus_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 1138 mosquitoes.\n", + "The **[Af1.1](af1.1): _Anopheles funestus_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 2065 mosquitoes.\n", "\n", "More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af11-anopheles-funestus-data-resource/). \n", "\n", @@ -1262,9 +1262,9 @@ }, "environment": { "kernel": "mgenv_7.2.0", - "name": "workbench-notebooks.m139", + "name": "workbench-notebooks.m141", "type": "gcloud", - "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139" + "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141" }, "kernelspec": { "display_name": "Python (mgenv_7.2.0)", diff --git a/docs/ag3/ag3.10.ipynb b/docs/ag3/ag3.10.ipynb index db9f683..1304416 100644 --- a/docs/ag3/ag3.10.ipynb +++ b/docs/ag3/ag3.10.ipynb @@ -85,7 +85,7 @@ "source": [ "## Sample sets\n", "\n", - "The samples included in `Ag3.10` have been organised into 6 sample sets. \n", + "The samples included in `Ag3.10` have been organised into 4 sample sets. \n", "\n", "Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above." ] @@ -1037,9 +1037,9 @@ }, "environment": { "kernel": "mgenv_7.2.0", - "name": "workbench-notebooks.m139", + "name": "workbench-notebooks.m141", "type": "gcloud", - "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139" + "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141" }, "kernelspec": { "display_name": "Python (mgenv_7.2.0)", diff --git a/docs/ag3/ag3.11.ipynb b/docs/ag3/ag3.11.ipynb index 4afdbec..3664984 100644 --- a/docs/ag3/ag3.11.ipynb +++ b/docs/ag3/ag3.11.ipynb @@ -81,7 +81,7 @@ "source": [ "## Sample sets\n", "\n", - "The samples included in `Ag3.11` have been organised into 6 sample sets. \n", + "The samples included in `Ag3.11` have been organised into 2 sample sets. \n", "\n", "Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above." ] @@ -719,10 +719,16 @@ "name": "Ag3.0-intro.ipynb", "provenance": [] }, + "environment": { + "kernel": "mgenv_7.2.0", + "name": "workbench-notebooks.m141", + "type": "gcloud", + "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141" + }, "kernelspec": { - "display_name": "global-global-mgenv-6.0.6", + "display_name": "Python (mgenv_7.2.0)", "language": "python", - "name": "conda-env-global-global-mgenv-6.0.6-py" + "name": "mgenv_7.2.0" }, "language_info": { "codemirror_mode": { @@ -734,7 +740,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.12.7" + "version": "3.12.11" } }, "nbformat": 4, diff --git a/docs/ag3/ag3.9.ipynb b/docs/ag3/ag3.9.ipynb index bfa335d..8af6457 100644 --- a/docs/ag3/ag3.9.ipynb +++ b/docs/ag3/ag3.9.ipynb @@ -8,7 +8,7 @@ "source": [ "# Ag3.9\n", "\n", - "The **[Ag3.9](Ag3.9): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 3639 mosquitoes.\n", + "The **[Ag3.9](Ag3.9): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 3571 mosquitoes.\n", "\n", "More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/ag39-anopheles-gambiae-data-resource). \n", "\n", @@ -90,7 +90,7 @@ "source": [ "## Sample sets\n", "\n", - "The samples included in `Ag3.9` have been organised into 6 sample sets. \n", + "The samples included in `Ag3.9` have been organised into 10 sample sets. \n", "\n", "Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above." ] @@ -1508,9 +1508,9 @@ }, "environment": { "kernel": "mgenv_7.2.0", - "name": "workbench-notebooks.m139", + "name": "workbench-notebooks.m141", "type": "gcloud", - "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139" + "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141" }, "kernelspec": { "display_name": "Python (mgenv_7.2.0)",