Skip to content
This repository was archived by the owner on Aug 30, 2023. It is now read-only.
This repository was archived by the owner on Aug 30, 2023. It is now read-only.

Which Columns Used From msms.txt for CE Calibration #98

Description

@kostrouc

I have some predicted peptide sequences output from a non-standard software. I would like to know specifically which columns at a minimum Prosit uses for the CE calibration step so that I can process them with this software to eventually generate a .dlib database for searching with EncylopeDIA.

Attached is an example of my predicted sequence output file structure which contains the modified sequence, spectra number, score, charge, calculated m/z, and expected m/z. What additional calculations will I need to perform to match the minimum required columns for the CE calibration step to be successful?
example_pept_ids.xlsx

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Fields

    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions