sonarqube cleanup.

Author: karlnicholas

src/main/java/org/hdf5javalib/examples/read/FixedPointRead.java

@@ -166,7 +166,7 @@ void tryMatrixSpliterator(SeekableByteChannel fileChannel, HdfDataFile hdfDataFi
             for (int c = 0; c < shape[1]; c++) {
                 row.append(FlattenedArrayUtils.getElement(flattenedData, shape, r, c).setScale(2, RoundingMode.HALF_UP)).append(" ");
             }
-            log.info(row.toString().trim());
+            log.info("{}", row.toString().trim());
         }
 
         log.info("FlattenedData Streamed = ");
@@ -176,7 +176,7 @@ void tryMatrixSpliterator(SeekableByteChannel fileChannel, HdfDataFile hdfDataFi
             for (int c = 0; c < shape[1]; c++) {
                 row.append(bdMatrix[r][c].setScale(2, RoundingMode.HALF_UP)).append(" ");
             }
-            log.info(row.toString().trim());
+            log.info("{}", row.toString().trim());
         }
 
         BigDecimal[] bdReduced = (BigDecimal[]) FlattenedArrayUtils.reduceAlongAxis(dataSource.streamFlattened(), shape, 0, BigDecimal::max, BigDecimal.class);

src/main/java/org/hdf5javalib/examples/read/TwentyScalarRead.java

@@ -45,9 +45,6 @@ private void run() throws Exception {
                 }
             }
             log.debug("Superblock: {} ", reader.getSuperblock());
-//                try (HdfDataset ds = reader.getRootGroup().findDataset("dataset_14")) {
-//                    HdfDisplayUtils.displayScalarData(channel, ds, Long.class, reader);
-//                }
         }
     }
 }

src/main/java/org/hdf5javalib/hdffile/dataobjects/HdfObjectHeaderPrefixV1.java

@@ -125,6 +125,7 @@ public void writeAsGroupToByteChannel(SeekableByteChannel seekableByteChannel) t
      *
      * @param buffer the ByteBuffer to write to
      */
+    @Override
     public void writeInitialMessageBlockToBuffer(ByteBuffer buffer) {
         // Write version (1 byte)
         buffer.put((byte) version);

src/main/java/org/hdf5javalib/hdffile/dataobjects/messages/DataLayoutMessage.java

@@ -214,7 +214,7 @@ public static HdfBTreeV1 readBTreeFromSeekableByteChannel(
             int dimensions,
             FixedPointDatatype eightByteFixedPointType,
             HdfDataFile hdfDataFile
-    ) throws Exception {
+    ) throws IOException, InvocationTargetException, InstantiationException, IllegalAccessException {
         return readFromSeekableByteChannelRecursive(fileChannel, btreeAddress, dimensions, eightByteFixedPointType, hdfDataFile, new LinkedHashMap<>());
     }
 
@@ -234,7 +234,7 @@ private static HdfBTreeV1 readFromSeekableByteChannelRecursive(SeekableByteChann
                                                                    FixedPointDatatype eightByteFixedPointType,
                                                                    HdfDataFile hdfDataFile,
                                                                    Map<Long, HdfBTreeV1> visitedNodes
-    ) throws Exception {
+    ) throws IOException, InvocationTargetException, InstantiationException, IllegalAccessException {
         if (visitedNodes.containsKey(nodeAddress)) {
             throw new IllegalStateException("Cycle detected or node re-visited: BTree node address "
                     + nodeAddress + " encountered again during recursive read.");