diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md index e68a5ed1..880f8620 100644 --- a/.github/CONTRIBUTING.md +++ b/.github/CONTRIBUTING.md @@ -130,7 +130,7 @@ The package maintainer also reserves the right to adjust the criteria to recogni If you have further questions regarding the contribution guidelines, please contact the package/repository maintainer. -[docs]: https://insightsengineering.github.io/teal.code/latest-tag/index.html -[articles]: https://insightsengineering.github.io/teal.code/latest-tag/articles/index.html -[license]: https://insightsengineering.github.io/teal.code/latest-tag/LICENSE-text.html -[insights]: https://github.com/insightsengineering/teal.code/pulse +[docs]: https://pharmaverse.github.io/teal.code/latest-tag/index.html +[articles]: https://pharmaverse.github.io/teal.code/latest-tag/articles/index.html +[license]: https://pharmaverse.github.io/teal.code/latest-tag/LICENSE-text.html +[insights]: https://github.com/pharmaverse/teal.code/pulse diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml index 0f9f552f..57adc193 100644 --- a/.github/ISSUE_TEMPLATE/bug.yml +++ b/.github/ISSUE_TEMPLATE/bug.yml @@ -21,25 +21,19 @@ body: id: session-info attributes: label: sessionInfo() - description: | - Please copy and paste your output from `sessionInfo()`. This will be automatically formatted into code, - so no need for backticks. + description: Please copy and paste your output from `sessionInfo()`. This will be automatically formatted into code, so no need for backticks. render: R - type: textarea id: logs attributes: label: Relevant log output - description: | - Please copy and paste any relevant log output. This will be automatically formatted into code, - so no need for backticks. + description: Please copy and paste any relevant log output. This will be automatically formatted into code, so no need for backticks. render: R - type: checkboxes id: code-of-conduct attributes: label: Code of Conduct - description: | - By submitting this issue, you agree to follow our - [Code of Conduct.](https://insightsengineering.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) + description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) options: - label: I agree to follow this project's Code of Conduct. required: true @@ -47,9 +41,7 @@ body: id: contributor-guidelines attributes: label: Contribution Guidelines - description: | - By submitting this issue, you agree to follow our - [Contribution Guidelines.](https://insightsengineering.github.io/teal.code/latest-tag/CONTRIBUTING.html) + description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.code/latest-tag/CONTRIBUTING.html) options: - label: I agree to follow this project's Contribution Guidelines. required: true @@ -57,9 +49,7 @@ body: id: security-policy attributes: label: Security Policy - description: | - By submitting this issue, you agree to follow our - [Security Policy.](https://github.com/insightsengineering/teal.code/security/policy) + description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.code/security/policy) options: - label: I agree to follow this project's Security Policy. required: true diff --git a/.github/ISSUE_TEMPLATE/feature.yml b/.github/ISSUE_TEMPLATE/feature.yml index 7335d68b..7b3ba408 100644 --- a/.github/ISSUE_TEMPLATE/feature.yml +++ b/.github/ISSUE_TEMPLATE/feature.yml @@ -13,9 +13,7 @@ body: id: code-of-conduct attributes: label: Code of Conduct - description: | - By submitting this issue, you agree to follow our - [Code of Conduct.](https://insightsengineering.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) + description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) options: - label: I agree to follow this project's Code of Conduct. required: true @@ -23,9 +21,7 @@ body: id: contributor-guidelines attributes: label: Contribution Guidelines - description: | - By submitting this issue, you agree to follow our - [Contribution Guidelines.](https://insightsengineering.github.io/teal.code/latest-tag/CONTRIBUTING.html) + description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.code/latest-tag/CONTRIBUTING.html) options: - label: I agree to follow this project's Contribution Guidelines. required: true @@ -33,9 +29,7 @@ body: id: security-policy attributes: label: Security Policy - description: | - By submitting this issue, you agree to follow our - [Security Policy.](https://github.com/insightsengineering/teal.code/security/policy) + description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.code/security/policy) options: - label: I agree to follow this project's Security Policy. required: true diff --git a/.github/ISSUE_TEMPLATE/question.yml b/.github/ISSUE_TEMPLATE/question.yml index 00a81616..9097e379 100644 --- a/.github/ISSUE_TEMPLATE/question.yml +++ b/.github/ISSUE_TEMPLATE/question.yml @@ -13,9 +13,7 @@ body: id: code-of-conduct attributes: label: Code of Conduct - description: | - By submitting this issue, you agree to follow our - [Code of Conduct.](https://insightsengineering.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) + description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.code/latest-tag/CODE_OF_CONDUCT.html) options: - label: I agree to follow this project's Code of Conduct. required: true @@ -23,9 +21,7 @@ body: id: contributor-guidelines attributes: label: Contribution Guidelines - description: | - By submitting this issue, you agree to follow our - [Contribution Guidelines.](https://insightsengineering.github.io/teal.code/latest-tag/CONTRIBUTING.html) + description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.code/latest-tag/CONTRIBUTING.html) options: - label: I agree to follow this project's Contribution Guidelines. required: true @@ -33,9 +29,7 @@ body: id: security-policy attributes: label: Security Policy - description: | - By submitting this issue, you agree to follow our - [Security Policy.](https://github.com/insightsengineering/teal.code/security/policy) + description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.code/security/policy) options: - label: I agree to follow this project's Security Policy. required: true diff --git a/DESCRIPTION b/DESCRIPTION index 20e67ac0..67b299f9 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -20,9 +20,9 @@ Authors@R: c( Description: Introduction of 'qenv' S4 class, that facilitates code execution and reproducibility in 'teal' applications. License: Apache License 2.0 -URL: https://insightsengineering.github.io/teal.code/, - https://github.com/insightsengineering/teal.code -BugReports: https://github.com/insightsengineering/teal.code/issues +URL: https://pharmaverse.github.io/teal.code/, + https://github.com/pharmaverse/teal.code +BugReports: https://github.com/pharmaverse/teal.code/issues Depends: methods, R (>= 4.0) diff --git a/README.md b/README.md index 367c0470..a14be64c 100644 --- a/README.md +++ b/README.md @@ -7,22 +7,22 @@ [![Last Month Downloads](http://cranlogs.r-pkg.org/badges/last-month/teal.code?color=green)](https://cran.r-project.org/package=teal.code) [![Last Week Downloads](http://cranlogs.r-pkg.org/badges/last-week/teal.code?color=green)](https://cran.r-project.org/package=teal.code) -[![Check 🛠](https://github.com/insightsengineering/teal.code/actions/workflows/check.yaml/badge.svg)](https://insightsengineering.github.io/teal.code/main/unit-test-report/) -[![Docs 📚](https://github.com/insightsengineering/teal.code/actions/workflows/docs.yaml/badge.svg)](https://insightsengineering.github.io/teal.code/) -[![Code Coverage 📔](https://raw.githubusercontent.com/insightsengineering/teal.code/_xml_coverage_reports/data/main/badge.svg)](https://insightsengineering.github.io/teal.code/main/coverage-report/) - -![GitHub forks](https://img.shields.io/github/forks/insightsengineering/teal.code?style=social) -![GitHub repo stars](https://img.shields.io/github/stars/insightsengineering/teal.code?style=social) - -![GitHub commit activity](https://img.shields.io/github/commit-activity/m/insightsengineering/teal.code) -![GitHub contributors](https://img.shields.io/github/contributors/insightsengineering/teal.code) -![GitHub last commit](https://img.shields.io/github/last-commit/insightsengineering/teal.code) -![GitHub pull requests](https://img.shields.io/github/issues-pr/insightsengineering/teal.code) -![GitHub repo size](https://img.shields.io/github/repo-size/insightsengineering/teal.code) -![GitHub language count](https://img.shields.io/github/languages/count/insightsengineering/teal.code) +[![Check 🛠](https://github.com/pharmaverse/teal.code/actions/workflows/check.yaml/badge.svg)](https://pharmaverse.github.io/teal.code/main/unit-test-report/) +[![Docs 📚](https://github.com/pharmaverse/teal.code/actions/workflows/docs.yaml/badge.svg)](https://pharmaverse.github.io/teal.code/) +[![Code Coverage 📔](https://raw.githubusercontent.com/pharmaverse/teal.code/_xml_coverage_reports/data/main/badge.svg)](https://pharmaverse.github.io/teal.code/main/coverage-report/) + +![GitHub forks](https://img.shields.io/github/forks/pharmaverse/teal.code?style=social) +![GitHub repo stars](https://img.shields.io/github/stars/pharmaverse/teal.code?style=social) + +![GitHub commit activity](https://img.shields.io/github/commit-activity/m/pharmaverse/teal.code) +![GitHub contributors](https://img.shields.io/github/contributors/pharmaverse/teal.code) +![GitHub last commit](https://img.shields.io/github/last-commit/pharmaverse/teal.code) +![GitHub pull requests](https://img.shields.io/github/issues-pr/pharmaverse/teal.code) +![GitHub repo size](https://img.shields.io/github/repo-size/pharmaverse/teal.code) +![GitHub language count](https://img.shields.io/github/languages/count/pharmaverse/teal.code) [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) -[![Current Version](https://img.shields.io/github/r-package/v/insightsengineering/teal.code/main?color=purple\&label=package%20version)](https://github.com/insightsengineering/teal.code/tree/main) -[![Open Issues](https://img.shields.io/github/issues-raw/insightsengineering/teal.code?color=red\&label=open%20issues)](https://github.com/insightsengineering/teal.code/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc) +[![Current Version](https://img.shields.io/github/r-package/v/pharmaverse/teal.code/main?color=purple\&label=package%20version)](https://github.com/pharmaverse/teal.code/tree/main) +[![Open Issues](https://img.shields.io/github/issues-raw/pharmaverse/teal.code?color=red\&label=open%20issues)](https://github.com/pharmaverse/teal.code/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc) ## Overview @@ -45,12 +45,12 @@ Alternatively, you might want to use the development version. ```r # install.packages("pak") -pak::pak("insightsengineering/teal.code") +pak::pak("pharmaverse/teal.code") ``` ## Usage -To understand how to use this package, please refer to the [Getting Started](https://insightsengineering.github.io/teal.code/latest-tag/articles/teal-code.html) article, which provides multiple examples of code implementation. +To understand how to use this package, please refer to the [Getting Started](https://pharmaverse.github.io/teal.code/latest-tag/articles/teal-code.html) article, which provides multiple examples of code implementation. Below is the showcase of the example usage diff --git a/_pkgdown.yml b/_pkgdown.yml index 6be321a6..03f30165 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -1,5 +1,5 @@ --- -url: https://insightsengineering.github.io/teal.code +url: https://pharmaverse.github.io/teal.code template: package: nesttemplate @@ -20,7 +20,7 @@ navbar: href: unit-test-report-non-cran/ github: icon: fa-github - href: https://github.com/insightsengineering/teal.code + href: https://github.com/pharmaverse/teal.code reference: - title: "Reproducible qenv objects" diff --git a/man/teal.code-package.Rd b/man/teal.code-package.Rd index 9124ca1e..3e7a6b23 100644 --- a/man/teal.code-package.Rd +++ b/man/teal.code-package.Rd @@ -13,9 +13,9 @@ module which returns code to reproduce application outputs. \seealso{ Useful links: \itemize{ - \item \url{https://insightsengineering.github.io/teal.code/} - \item \url{https://github.com/insightsengineering/teal.code} - \item Report bugs at \url{https://github.com/insightsengineering/teal.code/issues} + \item \url{https://pharmaverse.github.io/teal.code/} + \item \url{https://github.com/pharmaverse/teal.code} + \item Report bugs at \url{https://github.com/pharmaverse/teal.code/issues} } } diff --git a/staged_dependencies.yaml b/staged_dependencies.yaml index bb6bce53..18d6d8ab 100644 --- a/staged_dependencies.yaml +++ b/staged_dependencies.yaml @@ -1,21 +1,21 @@ --- current_repo: - repo: insightsengineering/teal.code + repo: pharmaverse/teal.code host: https://github.com upstream_repos: downstream_repos: - insightsengineering/teal: - repo: insightsengineering/teal + pharmaverse/teal: + repo: pharmaverse/teal host: https://github.com - insightsengineering/teal.modules.general: - repo: insightsengineering/teal.modules.general + pharmaverse/teal.modules.general: + repo: pharmaverse/teal.modules.general host: https://github.com - insightsengineering/teal.modules.clinical: - repo: insightsengineering/teal.modules.clinical + pharmaverse/teal.modules.clinical: + repo: pharmaverse/teal.modules.clinical host: https://github.com - insightsengineering/teal.goshawk: - repo: insightsengineering/teal.goshawk + pharmaverse/teal.goshawk: + repo: pharmaverse/teal.goshawk host: https://github.com - insightsengineering/teal.osprey: - repo: insightsengineering/teal.osprey + pharmaverse/teal.osprey: + repo: pharmaverse/teal.osprey host: https://github.com diff --git a/vignettes/qenv.Rmd b/vignettes/qenv.Rmd index 5f088a7f..38863067 100644 --- a/vignettes/qenv.Rmd +++ b/vignettes/qenv.Rmd @@ -216,4 +216,4 @@ Currently, object linking for reproducibility is only supported by the `eval_cod ## `qenv` and `teal` applications -The versatile `qenv` object can seamlessly integrate into teal modules. Explore the teal vignette [Creating Custom Modules](https://insightsengineering.github.io/teal/latest-tag/articles/creating-custom-modules.html) for detailed guidance. +The versatile `qenv` object can seamlessly integrate into teal modules. Explore the teal vignette [Creating Custom Modules](https://pharmaverse.github.io/teal/latest-tag/articles/creating-custom-modules.html) for detailed guidance. diff --git a/vignettes/teal-code.Rmd b/vignettes/teal-code.Rmd index 1d205267..9c7ee79d 100644 --- a/vignettes/teal-code.Rmd +++ b/vignettes/teal-code.Rmd @@ -17,4 +17,4 @@ In this context, the `qenv` object within the `teal.code` package emerges as a p It's worth noting that there exists a public [`shinymeta`](https://github.com/rstudio/shinymeta) R package by `RStudio`, offering similar functionality. However, integrating `shinymeta` into `teal` modules poses challenges. Consequently, we recommend the use of `qenv` for teal-based applications. -For comprehensive insights, please refer to the [`qenv` vignette](https://insightsengineering.github.io/teal.code/latest-tag/articles/qenv.html). +For comprehensive insights, please refer to the [`qenv` vignette](https://pharmaverse.github.io/teal.code/latest-tag/articles/qenv.html).