From 7f19f3165b48127fb236a20c6008152e9418606a Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Wed, 6 May 2026 17:39:56 +0200 Subject: [PATCH 1/9] update due to new Rstudio version --- .Rbuildignore | 2 ++ .gitignore | 1 + 2 files changed, 3 insertions(+) diff --git a/.Rbuildignore b/.Rbuildignore index 877c8d12..b9576611 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -5,3 +5,5 @@ ^\.Rproj\.user$ ^\.github$ ^test_docker.sh$ +^\.positai$ +^\.claude$ diff --git a/.gitignore b/.gitignore index fc96663a..4812d025 100644 --- a/.gitignore +++ b/.gitignore @@ -69,3 +69,4 @@ libs/ *_libs output/ renv/library +.positai From 63a409d1168bf2131b0eee203ea0df9f23a6f7e3 Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Wed, 6 May 2026 17:41:54 +0200 Subject: [PATCH 2/9] update renv to 1.2.2 --- renv/activate.R | 120 ++++++++++++++++++++++++++++++++++++++++++++---- 1 file changed, 112 insertions(+), 8 deletions(-) diff --git a/renv/activate.R b/renv/activate.R index 90b251ca..6487d062 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,7 +2,8 @@ local({ # the requested version of renv - version <- "1.1.4" + version <- "1.2.2" + attr(version, "md5") <- "bb69b6403b1bad0442657e9e8e57cc83" attr(version, "sha") <- NULL # the project directory @@ -168,6 +169,16 @@ local({ if (quiet) return(invisible()) + # also check for config environment variables that should suppress messages + # https://github.com/rstudio/renv/issues/2214 + enabled <- Sys.getenv("RENV_CONFIG_STARTUP_QUIET", unset = NA) + if (!is.na(enabled) && tolower(enabled) %in% c("true", "1")) + return(invisible()) + + enabled <- Sys.getenv("RENV_CONFIG_SYNCHRONIZED_CHECK", unset = NA) + if (!is.na(enabled) && tolower(enabled) %in% c("false", "0")) + return(invisible()) + msg <- sprintf(fmt, ...) cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") @@ -215,6 +226,20 @@ local({ section <- header(sprintf("Bootstrapping renv %s", friendly)) catf(section) + # ensure the target library path exists; required for file.copy(..., recursive = TRUE) + dir.create(library, showWarnings = FALSE, recursive = TRUE) + + # try to install renv from cache + md5 <- attr(version, "md5", exact = TRUE) + if (length(md5)) { + pkgpath <- renv_bootstrap_find(version) + if (length(pkgpath) && file.exists(pkgpath)) { + ok <- file.copy(pkgpath, library, recursive = TRUE) + if (isTRUE(ok)) + return(invisible()) + } + } + # attempt to download renv catf("- Downloading renv ... ", appendLF = FALSE) withCallingHandlers( @@ -240,7 +265,6 @@ local({ # add empty line to break up bootstrapping from normal output catf("") - return(invisible()) } @@ -257,12 +281,20 @@ local({ repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) if (!is.na(repos)) { - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) + # split on ';' if present + parts <- strsplit(repos, ";", fixed = TRUE)[[1L]] - return(repos) + # split into named repositories if present + idx <- regexpr("=", parts, fixed = TRUE) + keys <- substring(parts, 1L, idx - 1L) + vals <- substring(parts, idx + 1L) + names(vals) <- keys + + # if we have a single unnamed repository, call it CRAN + if (length(vals) == 1L && identical(keys, "")) + names(vals) <- "CRAN" + + return(vals) } @@ -511,6 +543,51 @@ local({ } + renv_bootstrap_find <- function(version) { + + path <- renv_bootstrap_find_cache(version) + if (length(path) && file.exists(path)) { + catf("- Using renv %s from global package cache", version) + return(path) + } + + } + + renv_bootstrap_find_cache <- function(version) { + + md5 <- attr(version, "md5", exact = TRUE) + if (is.null(md5)) + return() + + # infer path to renv cache + cache <- Sys.getenv("RENV_PATHS_CACHE", unset = "") + if (!nzchar(cache)) { + root <- Sys.getenv("RENV_PATHS_ROOT", unset = NA) + if (!is.na(root)) + cache <- file.path(root, "cache") + } + + if (!nzchar(cache)) { + tools <- asNamespace("tools") + if (is.function(tools$R_user_dir)) { + root <- tools$R_user_dir("renv", "cache") + cache <- file.path(root, "cache") + } + } + + # start completing path to cache + file.path( + cache, + renv_bootstrap_cache_version(), + renv_bootstrap_platform_prefix(), + "renv", + version, + md5, + "renv" + ) + + } + renv_bootstrap_download_tarball <- function(version) { # if the user has provided the path to a tarball via @@ -979,7 +1056,7 @@ local({ renv_bootstrap_validate_version_release <- function(version, description) { expected <- description[["Version"]] - is.character(expected) && identical(expected, version) + is.character(expected) && identical(c(expected), c(version)) } renv_bootstrap_hash_text <- function(text) { @@ -1158,6 +1235,21 @@ local({ } renv_bootstrap_run <- function(project, libpath, version) { + tryCatch( + renv_bootstrap_run_impl(project, libpath, version), + error = function(e) { + msg <- paste( + "failed to bootstrap renv: the project will not be loaded.", + paste("Reason:", conditionMessage(e)), + "Use `renv::activate()` to re-initialize the project.", + sep = "\n" + ) + warning(msg, call. = FALSE) + } + ) + } + + renv_bootstrap_run_impl <- function(project, libpath, version) { # perform bootstrap bootstrap(version, libpath) @@ -1181,6 +1273,18 @@ local({ } + renv_bootstrap_cache_version <- function() { + # NOTE: users should normally not override the cache version; + # this is provided just to make testing easier + Sys.getenv("RENV_CACHE_VERSION", unset = "v5") + } + + renv_bootstrap_cache_version_previous <- function() { + version <- renv_bootstrap_cache_version() + number <- as.integer(substring(version, 2L)) + paste("v", number - 1L, sep = "") + } + renv_json_read <- function(file = NULL, text = NULL) { jlerr <- NULL From 44afa3d5fbc4498ce4113efa86bf45d29edd20f7 Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Wed, 6 May 2026 17:42:31 +0200 Subject: [PATCH 3/9] update package versions in renv.lock (R 4.5 -> 4.6) --- renv.lock | 1535 +++++++++++++++++++++++++++++------------------------ 1 file changed, 845 insertions(+), 690 deletions(-) diff --git a/renv.lock b/renv.lock index fba9aa5e..8aaa025d 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.5.1", + "Version": "4.6.0", "Repositories": [ { "Name": "CRAN", @@ -11,10 +11,10 @@ "Packages": { "DBI": { "Package": "DBI", - "Version": "1.2.3", + "Version": "1.3.0", "Source": "Repository", "Title": "R Database Interface", - "Date": "2024-06-02", + "Date": "2026-02-11", "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", "License": "LGPL (>= 2.1)", @@ -27,8 +27,9 @@ "Suggests": [ "arrow", "blob", + "callr", "covr", - "DBItest", + "DBItest (>= 1.8.2)", "dbplyr", "downlit", "dplyr", @@ -37,6 +38,8 @@ "knitr", "magrittr", "nanoarrow (>= 0.3.0.1)", + "otel", + "otelsdk", "RMariaDB", "rmarkdown", "rprojroot", @@ -49,57 +52,21 @@ "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/check": "r-dbi/DBItest", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (), R Consortium [fnd]", + "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, - "MASS": { - "Package": "MASS", - "Version": "7.3-65", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-02-19", - "Revision": "$Rev: 3681 $", - "Depends": [ - "R (>= 4.4.0)", - "grDevices", - "graphics", - "stats", - "utils" - ], - "Imports": [ - "methods" - ], - "Suggests": [ - "lattice", - "nlme", - "nnet", - "survival" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))", - "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).", - "Title": "Support Functions and Datasets for Venables and Ripley's MASS", - "LazyData": "yes", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "Contact": "", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN" - }, "Matrix": { "Package": "Matrix", - "Version": "1.7-3", + "Version": "1.7-5", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-03-05", + "Date": "2026-03-20", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -135,7 +102,7 @@ "BuildResaveData": "no", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, @@ -184,12 +151,15 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.14", + "Version": "1.1.1-1.1", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2025-01-11", + "Date": "2026-04-19", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", + "Depends": [ + "R (>= 3.5.0)" + ], "Imports": [ "methods", "utils" @@ -206,11 +176,51 @@ "MailingList": "rcpp-devel@lists.r-forge.r-project.org", "RoxygenNote": "6.1.1", "Encoding": "UTF-8", + "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), JJ Allaire [aut] (), Kevin Ushey [aut] (), Qiang Kou [aut] (), Nathan Russell [aut], Iñaki Ucar [aut] (), Doug Bates [aut] (), John Chambers [aut]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, + "S7": { + "Package": "S7", + "Version": "0.2.2", + "Source": "Repository", + "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", + "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", + "Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.", + "License": "MIT + file LICENSE", + "URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7", + "BugReports": "https://github.com/RConsortium/S7/issues", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "utils" + ], + "Suggests": [ + "bench", + "callr", + "covr", + "knitr", + "methods", + "rmarkdown", + "testthat (>= 3.2.0)", + "tibble" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "sloop", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "TRUE", + "Config/testthat/start-first": "external-generic", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (ORCID: ), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (ORCID: ), Luke Tierney [aut], Hadley Wickham [aut, cre] (ORCID: )", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, "abind": { "Package": "abind", "Version": "1.4-8", @@ -281,7 +291,7 @@ }, "backports": { "Package": "backports", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Type": "Package", "Title": "Reimplementations of Functions Introduced Since R-3.0.0", @@ -297,16 +307,17 @@ "R (>= 3.0.0)" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", + "RoxygenNote": "7.3.3", + "Author": "Michel Lang [cre, aut] (ORCID: ), Duncan Murdoch [aut], R Core Team [aut]", "Repository": "CRAN" }, "base64enc": { "Package": "base64enc", - "Version": "0.1-3", + "Version": "0.1-6", "Source": "Repository", - "Title": "Tools for base64 encoding", - "Author": "Simon Urbanek ", + "Title": "Tools for 'base64' Encoding", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" @@ -314,9 +325,10 @@ "Enhances": [ "png" ], - "Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.", + "Description": "Tools for handling 'base64' encoding. It is more flexible than the orphaned 'base64' package.", "License": "GPL-2 | GPL-3", - "URL": "http://www.rforge.net/base64enc", + "URL": "https://www.rforge.net/base64enc", + "BugReports": "https://github.com/s-u/base64enc/issues", "NeedsCompilation": "yes", "Repository": "CRAN" }, @@ -355,41 +367,43 @@ }, "bit64": { "Package": "bit64", - "Version": "4.6.0-1", + "Version": "4.8.0", "Source": "Repository", "Title": "A S3 Class for Vectors of 64bit Integers", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )", + "Authors@R": "c( person(\"Michael\", \"Chirico\", email=\"michaelchirico4@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role=\"aut\"), person(\"Leonardo\", \"Silvestri\", role=\"ctb\"), person(\"Ofek\", \"Shilon\", role=\"ctb\"), person(\"Christian\", \"Ullerich\", role=\"ctb\") )", "Depends": [ - "R (>= 3.4.0)", - "bit (>= 4.0.0)" + "R (>= 3.5.0)" ], "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", "License": "GPL-2 | GPL-3", "LazyLoad": "yes", "ByteCompile": "yes", - "URL": "https://github.com/r-lib/bit64", + "URL": "https://github.com/r-lib/bit64, https://bit64.r-lib.org", "Encoding": "UTF-8", "Imports": [ + "bit (>= 4.0.0)", "graphics", "methods", "stats", "utils" ], "Suggests": [ - "testthat (>= 3.0.3)", + "patrick (>= 0.3.0)", + "testthat (>= 3.3.0)", "withr" ], "Config/testthat/edition": "3", - "Config/needs/development": "testthat", - "RoxygenNote": "7.3.2", + "Config/Needs/development": "patrick, testthat", + "Config/Needs/website": "tidyverse/tidytemplate", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb], Christian Ullerich [ctb]", "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, "blob": { "Package": "blob", - "Version": "1.2.4", + "Version": "1.3.0", "Source": "Repository", "Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", @@ -406,13 +420,14 @@ "covr", "crayon", "pillar (>= 1.2.1)", - "testthat" + "testthat (>= 3.0.0)" ], "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]", "Maintainer": "Kirill Müller ", @@ -420,7 +435,7 @@ }, "bookdown": { "Package": "bookdown", - "Version": "0.43", + "Version": "0.46", "Source": "Repository", "Type": "Package", "Title": "Authoring Books and Technical Documents with R Markdown", @@ -448,7 +463,7 @@ "curl", "rstudioapi", "miniUI", - "rsconnect (>= 0.4.3)", + "rsconnect (>= 1.6.0)", "servr (>= 0.13)", "shiny", "tibble", @@ -462,14 +477,14 @@ "URL": "https://github.com/rstudio/bookdown, https://pkgs.rstudio.com/bookdown/", "BugReports": "https://github.com/rstudio/bookdown/issues", "SystemRequirements": "Pandoc (>= 1.17.2)", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/Needs/book": "remotes, webshot, svglite", "Config/Needs/website": "pkgdown, tidyverse/tidytemplate, rstudio/quillt", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Christophe Dervieux [ctb] (), JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Atsushi Yasumoto [ctb] (), Aust Frederik [ctb] (), Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Clifton Franklund [ctb], Daniel Emaasit [ctb], David Shuman [ctb], Dean Attali [ctb], Drew Tyre [ctb], Ellis Valentiner [ctb], Frans van Dunne [ctb], Hadley Wickham [ctb], Jeff Allen [ctb], Jennifer Bryan [ctb], Jonathan McPhers [ctb], JooYoung Seo [ctb] (), Joyce Robbins [ctb], Junwen Huang [ctb], Kevin Cheung [ctb], Kevin Ushey [ctb], Kim Seonghyun [ctb], Kirill Muller [ctb], Luciano Selzer [ctb], Matthew Lincoln [ctb], Maximilian Held [ctb], Michael Sachs [ctb], Michal Bojanowski [ctb], Nathan Werth [ctb], Noam Ross [ctb], Peter Hickey [ctb], Pedro Rafael D. Marinho [ctb] (), Romain Lesur [ctb] (), Sahir Bhatnagar [ctb], Shir Dekel [ctb] (), Steve Simpson [ctb], Thierry Onkelinx [ctb] (), Vincent Fulco [ctb], Yixuan Qiu [ctb], Zhuoer Dong [ctb], Posit Software, PBC [cph, fnd], Bartek Szopka [ctb] (The jQuery Highlight plugin), Zeno Rocha [cph] (clipboard.js library), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [ctb] (ORCID: ), JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Aust Frederik [ctb] (ORCID: ), Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Clifton Franklund [ctb], Daniel Emaasit [ctb], David Shuman [ctb], Dean Attali [ctb], Drew Tyre [ctb], Ellis Valentiner [ctb], Frans van Dunne [ctb], Hadley Wickham [ctb], Jeff Allen [ctb], Jennifer Bryan [ctb], Jonathan McPhers [ctb], JooYoung Seo [ctb] (ORCID: ), Joyce Robbins [ctb], Junwen Huang [ctb], Kevin Cheung [ctb], Kevin Ushey [ctb], Kim Seonghyun [ctb], Kirill Muller [ctb], Luciano Selzer [ctb], Matthew Lincoln [ctb], Maximilian Held [ctb], Michael Sachs [ctb], Michal Bojanowski [ctb], Nathan Werth [ctb], Noam Ross [ctb], Peter Hickey [ctb], Pedro Rafael D. Marinho [ctb] (ORCID: ), Romain Lesur [ctb] (ORCID: ), Sahir Bhatnagar [ctb], Shir Dekel [ctb] (ORCID: ), Steve Simpson [ctb], Thierry Onkelinx [ctb] (ORCID: ), Vincent Fulco [ctb], Yixuan Qiu [ctb], Zhuoer Dong [ctb], Posit Software, PBC [cph, fnd], Bartek Szopka [ctb] (The jQuery Highlight plugin), Zeno Rocha [cph] (clipboard.js library), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)", "Repository": "CRAN" }, "brew": { @@ -521,7 +536,7 @@ }, "bslib": { "Package": "bslib", - "Version": "0.9.0", + "Version": "0.10.0", "Source": "Repository", "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'", "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )", @@ -547,16 +562,18 @@ "sass (>= 0.4.9)" ], "Suggests": [ + "brand.yml", "bsicons", "curl", "fontawesome", "future", "ggplot2", "knitr", + "lattice", "magrittr", "rappdirs", "rmarkdown (>= 2.7)", - "shiny (> 1.8.1)", + "shiny (>= 1.11.1)", "testthat", "thematic", "tools", @@ -571,10 +588,10 @@ "Config/testthat/parallel": "true", "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", + "RoxygenNote": "7.3.3", + "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-code-editor.R' 'input-dark-mode.R' 'input-submit.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'toast.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", "NeedsCompilation": "no", - "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], Garrick Aden-Buie [aut] (), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Joe Cheng [aut], Garrick Aden-Buie [aut] (ORCID: ), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, @@ -744,10 +761,10 @@ }, "cli": { "Package": "cli", - "Version": "3.6.5", + "Version": "3.6.6", "Source": "Repository", "Title": "Helpers for Developing Command Line Interfaces", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", "License": "MIT + file LICENSE", "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", @@ -782,10 +799,11 @@ ], "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -858,11 +876,11 @@ }, "codemetar": { "Package": "codemetar", - "Version": "0.3.5", + "Version": "0.3.7", "Source": "Repository", "Type": "Package", "Title": "Generate 'CodeMeta' Metadata for R Packages", - "Authors@R": "c(person(given = \"Carl\", family = \"Boettiger\", role = c(\"aut\", \"cre\", \"cph\"), email = \"cboettig@gmail.com\", comment = c(ORCID = \"0000-0002-1642-628X\")), person(given = \"Anna\", family = \"Krystalli\", role = c(\"rev\", \"ctb\"), comment = c(ORCID = \"0000-0002-2378-4915\")), person(given = \"Toph\", family = \"Allen\", role = \"rev\", comment = c(ORCID = \"0000-0003-4580-091X\")), person(given = \"Maëlle\", family = \"Salmon\", role = c(\"ctb\", \"aut\"), comment = c(ORCID = \"0000-0002-2815-0399\")), person(given = \"rOpenSci\", role = \"fnd\", comment = \"https://ropensci.org/\"), person(given = \"Katrin\", family = \"Leinweber\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5135-5758\")), person(given = \"Noam\", family = \"Ross\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2136-0000\")), person(given = \"Arfon\", family = \"Smith\", role = \"ctb\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(given = \"Sebastian\", family = \"Meyer\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1791-9449\")), person(given = \"Michael\", family = \"Rustler\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0647-7726\")), person(given = \"Hauke\", family = \"Sonnenberg\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9134-2871\")), person(given = \"Sebastian\", family = \"Kreutzer\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0734-2199\")), person(given = \"Thierry\", family = \"Onkelinx\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")) )", + "Authors@R": "c(person(given = \"Carl\", family = \"Boettiger\", role = c(\"aut\", \"cre\", \"cph\"), email = \"cboettig@gmail.com\", comment = c(ORCID = \"0000-0002-1642-628X\")), person(given = \"Anna\", family = \"Krystalli\", role = c(\"rev\", \"ctb\"), comment = c(ORCID = \"0000-0002-2378-4915\")), person(given = \"Toph\", family = \"Allen\", role = \"rev\", comment = c(ORCID = \"0000-0003-4580-091X\")), person(given = \"Maëlle\", family = \"Salmon\", role = c(\"ctb\", \"aut\"), comment = c(ORCID = \"0000-0002-2815-0399\")), person(given = \"rOpenSci\", role = \"fnd\", comment = c(ROR = \"019jywm96\")), person(given = \"Katrin\", family = \"Leinweber\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5135-5758\")), person(given = \"Noam\", family = \"Ross\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2136-0000\")), person(given = \"Arfon\", family = \"Smith\", role = \"ctb\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(given = \"Sebastian\", family = \"Meyer\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1791-9449\")), person(given = \"Michael\", family = \"Rustler\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0647-7726\")), person(given = \"Hauke\", family = \"Sonnenberg\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9134-2871\")), person(given = \"Sebastian\", family = \"Kreutzer\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0734-2199\")), person(given = \"Thierry\", family = \"Onkelinx\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")) )", "Description": "The 'Codemeta' Project defines a 'JSON-LD' format for describing software metadata, as detailed at . This package provides utilities to generate, parse, and modify 'codemeta.json' files automatically for R packages, as well as tools and examples for working with 'codemeta.json' 'JSON-LD' more generally.", "License": "GPL-3", "URL": "https://github.com/ropensci/codemetar, https://docs.ropensci.org/codemetar/", @@ -905,12 +923,12 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.2.1.9000", + "RoxygenNote": "7.3.2", "X-schema.org-isPartOf": "https://ropensci.org", "X-schema.org-keywords": "metadata, codemeta, ropensci, citation, credit, linked-data", "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "Carl Boettiger [aut, cre, cph] (), Anna Krystalli [rev, ctb] (), Toph Allen [rev] (), Maëlle Salmon [ctb, aut] (), rOpenSci [fnd] (https://ropensci.org/), Katrin Leinweber [ctb] (), Noam Ross [ctb] (), Arfon Smith [ctb], Jeroen Ooms [ctb] (), Sebastian Meyer [ctb] (), Michael Rustler [ctb] (), Hauke Sonnenberg [ctb] (), Sebastian Kreutzer [ctb] (), Thierry Onkelinx [ctb] ()", + "Author": "Carl Boettiger [aut, cre, cph] (ORCID: ), Anna Krystalli [rev, ctb] (ORCID: ), Toph Allen [rev] (ORCID: ), Maëlle Salmon [ctb, aut] (ORCID: ), rOpenSci [fnd] (ROR: ), Katrin Leinweber [ctb] (ORCID: ), Noam Ross [ctb] (ORCID: ), Arfon Smith [ctb], Jeroen Ooms [ctb] (ORCID: ), Sebastian Meyer [ctb] (ORCID: ), Michael Rustler [ctb] (ORCID: ), Hauke Sonnenberg [ctb] (ORCID: ), Sebastian Kreutzer [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: )", "Maintainer": "Carl Boettiger ", "Repository": "CRAN" }, @@ -933,7 +951,7 @@ }, "commonmark": { "Package": "commonmark", - "Version": "1.9.5", + "Version": "2.0.0", "Source": "Repository", "Type": "Package", "Title": "High Performance CommonMark and Github Markdown Rendering in R", @@ -951,13 +969,13 @@ "Language": "en-US", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), John MacFarlane [cph] (Author of cmark)", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), John MacFarlane [cph] (Author of cmark)", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "cpp11": { "Package": "cpp11", - "Version": "0.5.2", + "Version": "0.5.4", "Source": "Repository", "Title": "A C++11 Interface for R's C Interface", "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -996,9 +1014,9 @@ "Config/testthat/edition": "3", "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Davis Vaughan [aut, cre] (), Jim Hester [aut] (), Romain François [aut] (), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain François [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, @@ -1034,7 +1052,7 @@ }, "credentials": { "Package": "credentials", - "Version": "2.0.2", + "Version": "2.0.3", "Source": "Repository", "Type": "Package", "Title": "Tools for Managing SSH and Git Credentials", @@ -1061,13 +1079,13 @@ "URL": "https://docs.ropensci.org/credentials/ https://r-lib.r-universe.dev/credentials", "BugReports": "https://github.com/r-lib/credentials/issues", "NeedsCompilation": "no", - "Author": "Jeroen Ooms [aut, cre] ()", + "Author": "Jeroen Ooms [aut, cre] (ORCID: )", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "crul": { "Package": "crul", - "Version": "1.5.0", + "Version": "1.6.0", "Source": "Repository", "Title": "HTTP Client", "Description": "A simple HTTP client, with tools for making HTTP requests, and mocking HTTP requests. The package is built on R6, and takes inspiration from Ruby's 'faraday' gem (). The package name is a play on curl, the widely used command line tool for HTTP, and this package is built on top of the R package 'curl', an interface to 'libcurl' ().", @@ -1083,36 +1101,41 @@ "urltools (>= 1.6.0)", "httpcode (>= 0.2.0)", "jsonlite", - "mime" + "mime", + "rlang", + "lifecycle" ], "Suggests": [ - "testthat", + "testthat (>= 3.0.0)", "roxygen2 (>= 7.1.1)", "fauxpas (>= 0.1.0)", - "webmockr (>= 0.1.0)", + "webmockr (>= 2.2.0)", + "withr", "knitr", "rmarkdown" ], "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", "X-schema.org-applicationCategory": "Web", "X-schema.org-keywords": "http, https, API, web-services, curl, download, libcurl, async, mocking, caching", "X-schema.org-isPartOf": "https://ropensci.org", "NeedsCompilation": "no", - "Author": "Scott Chamberlain [aut, cre] ()", + "Author": "Scott Chamberlain [aut, cre] (ORCID: )", "Maintainer": "Scott Chamberlain ", "Repository": "CRAN" }, "curl": { "Package": "curl", - "Version": "6.2.2", + "Version": "7.1.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", "License": "MIT + file LICENSE", - "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", "URL": "https://jeroen.r-universe.dev/curl", "BugReports": "https://github.com/jeroen/curl/issues", "Suggests": [ @@ -1129,11 +1152,11 @@ "Depends": [ "R (>= 3.0.0)" ], - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, @@ -1202,42 +1225,39 @@ }, "devtools": { "Package": "devtools", - "Version": "2.4.5", + "Version": "2.5.2", "Source": "Repository", "Title": "Tools to Make Developing R Packages Easier", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Collection of package development tools.", "License": "MIT + file LICENSE", "URL": "https://devtools.r-lib.org/, https://github.com/r-lib/devtools", "BugReports": "https://github.com/r-lib/devtools/issues", "Depends": [ - "R (>= 3.0.2)", - "usethis (>= 2.1.6)" + "R (>= 4.1)", + "usethis (>= 3.2.1)" ], "Imports": [ - "cli (>= 3.3.0)", - "desc (>= 1.4.1)", - "ellipsis (>= 0.3.2)", - "fs (>= 1.5.2)", - "lifecycle (>= 1.0.1)", + "cli (>= 3.6.6)", + "desc (>= 1.4.3)", + "ellipsis (>= 0.3.3)", + "fs (>= 2.1.0)", + "lifecycle (>= 1.0.5)", "memoise (>= 2.0.1)", - "miniUI (>= 0.1.1.1)", - "pkgbuild (>= 1.3.1)", - "pkgdown (>= 2.0.6)", - "pkgload (>= 1.3.0)", - "profvis (>= 0.3.7)", + "miniUI (>= 0.1.2)", + "pak (>= 0.9.5)", + "pkgbuild (>= 1.4.8)", + "pkgdown (>= 2.2.0)", + "pkgload (>= 1.5.2)", + "profvis (>= 0.4.0)", "rcmdcheck (>= 1.4.0)", - "remotes (>= 2.4.2)", - "rlang (>= 1.0.4)", - "roxygen2 (>= 7.2.1)", - "rversions (>= 2.1.1)", - "sessioninfo (>= 1.2.2)", - "stats", - "testthat (>= 3.1.5)", - "tools", + "rlang (>= 1.2.0)", + "roxygen2 (>= 7.3.3)", + "rversions (>= 3.0.0)", + "sessioninfo (>= 1.2.3)", + "testthat (>= 3.3.2)", "urlchecker (>= 1.0.1)", - "utils", - "withr (>= 2.5.0)" + "withr (>= 3.0.2)" ], "Suggests": [ "BiocManager (>= 1.30.18)", @@ -1248,27 +1268,26 @@ "DT (>= 0.23)", "foghorn (>= 1.4.2)", "gh (>= 1.3.0)", - "gmailr (>= 1.0.1)", - "httr (>= 1.4.3)", + "httr2 (>= 1.0.0)", "knitr (>= 1.39)", "lintr (>= 3.0.0)", - "MASS", - "mockery (>= 0.4.3)", - "pingr (>= 2.0.1)", - "rhub (>= 1.1.1)", + "quarto (>= 1.5.1)", + "remotes (>= 2.5.0)", "rmarkdown (>= 2.14)", "rstudioapi (>= 0.13)", - "spelling (>= 2.2)" + "spelling (>= 2.2)", + "xml2" ], - "VignetteBuilder": "knitr", + "VignetteBuilder": "knitr, quarto", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.1", - "Config/testthat/edition": "3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut], Jennifer Bryan [aut, cre] (), RStudio [cph, fnd]", - "Maintainer": "Jennifer Bryan ", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut], Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "diffobj": { @@ -1307,13 +1326,13 @@ }, "digest": { "Package": "digest", - "Version": "0.6.37", + "Version": "0.6.39", "Source": "Repository", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))", - "Date": "2024-08-19", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Date": "2025-11-19", "Title": "Create Compact Hash Digests of R Objects", - "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", - "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html", "BugReports": "https://github.com/eddelbuettel/digest/issues", "Depends": [ "R (>= 3.3.0)" @@ -1324,18 +1343,19 @@ "License": "GPL (>= 2)", "Suggests": [ "tinytest", - "simplermarkdown" + "simplermarkdown", + "rbenchmark" ], "VignetteBuilder": "simplermarkdown", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (), Simon Urbanek [ctb] (), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (), Qiang Kou [ctb] (), Thierry Onkelinx [ctb] (), Michel Lang [ctb] (), Viliam Simko [ctb], Kurt Hornik [ctb] (), Radford Neal [ctb] (), Kendon Bell [ctb] (), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (), Floris Vanderhaeghe [ctb] (), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (), Mark van der Loo [ctb] (), Chris Muir [ctb] (), Moritz Beller [ctb] (), Sebastian Campbell [ctb], Winston Chang [ctb] (), Dean Attali [ctb] (), Michael Chirico [ctb] (), Kevin Ushey [ctb]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "downlit": { "Package": "downlit", - "Version": "0.4.4", + "Version": "0.4.5", "Source": "Repository", "Title": "Syntax Highlighting and Automatic Linking", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -1372,7 +1392,7 @@ "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", @@ -1380,7 +1400,7 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.1.4", + "Version": "1.2.1", "Source": "Repository", "Type": "Package", "Title": "A Grammar of Data Manipulation", @@ -1390,27 +1410,25 @@ "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr", "BugReports": "https://github.com/tidyverse/dplyr/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.1.0)" ], "Imports": [ - "cli (>= 3.4.0)", + "cli (>= 3.6.2)", "generics", "glue (>= 1.3.2)", - "lifecycle (>= 1.0.3)", + "lifecycle (>= 1.0.5)", "magrittr (>= 1.5)", "methods", "pillar (>= 1.9.0)", "R6", - "rlang (>= 1.1.0)", + "rlang (>= 1.1.7)", "tibble (>= 3.2.0)", "tidyselect (>= 1.2.0)", "utils", - "vctrs (>= 0.6.4)" + "vctrs (>= 0.7.1)" ], "Suggests": [ - "bench", "broom", - "callr", "covr", "DBI", "dbplyr (>= 2.2.1)", @@ -1418,12 +1436,9 @@ "knitr", "Lahman", "lobstr", - "microbenchmark", "nycflights13", "purrr", "rmarkdown", - "RMySQL", - "RPostgreSQL", "RSQLite", "stringi (>= 1.7.6)", "testthat (>= 3.1.5)", @@ -1431,19 +1446,20 @@ "withr" ], "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse, shiny, pkgdown, tidyverse/tidytemplate", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Romain François [aut] (), Lionel Henry [aut], Kirill Müller [aut] (), Davis Vaughan [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Romain François [aut] (ORCID: ), Lionel Henry [aut], Kirill Müller [aut] (ORCID: ), Davis Vaughan [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "ellipsis": { "Package": "ellipsis", - "Version": "0.3.2", + "Version": "0.3.3", "Source": "Repository", "Title": "Tools for Working with ...", "Description": "The ellipsis is a powerful tool for extending functions. Unfortunately this power comes at a cost: misspelled arguments will be silently ignored. The ellipsis package provides a collection of functions to catch problems and alert the user.", @@ -1457,20 +1473,20 @@ "R (>= 3.2)" ], "Imports": [ - "rlang (>= 0.3.0)" + "rlang (>= 1.1.7)" ], "Suggests": [ "covr", "testthat" ], - "NeedsCompilation": "yes", + "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "evaluate": { "Package": "evaluate", - "Version": "1.0.3", + "Version": "1.0.5", "Source": "Repository", "Type": "Package", "Title": "Parsing and Evaluation Tools that Provide More Details than the Default", @@ -1489,7 +1505,8 @@ "lattice", "methods", "pkgload", - "rlang", + "ragg (>= 1.4.0)", + "rlang (>= 1.1.5)", "knitr", "testthat (>= 3.0.0)", "withr" @@ -1499,17 +1516,17 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (ORCID: ), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "fansi": { "Package": "fansi", - "Version": "1.0.6", + "Version": "1.0.7", "Source": "Repository", "Title": "ANSI Control Sequence Aware String Functions", "Description": "Counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.", - "Authors@R": "c( person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"), person(family=\"R Core Team\", email=\"R-core@r-project.org\", role=\"cph\", comment=\"UTF8 byte length calcs from src/util.c\" ))", + "Authors@R": "c( person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"), person(given=\"R Core Team\", email=\"R-core@r-project.org\", role=\"cph\", comment=\"UTF8 byte length calcs from src/util.c\" ), person(\"Michael\",\"Chirico\", role=\"ctb\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\") ), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database derivative data in src/width.c\") )", "Depends": [ "R (>= 3.1.0)" ], @@ -1526,11 +1543,11 @@ "grDevices", "utils" ], - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Collate": "'constants.R' 'fansi-package.R' 'internal.R' 'load.R' 'misc.R' 'nchar.R' 'strwrap.R' 'strtrim.R' 'strsplit.R' 'substr2.R' 'trimws.R' 'tohtml.R' 'unhandled.R' 'normalize.R' 'sgr.R'", "NeedsCompilation": "yes", - "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c)", + "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c), Michael Chirico [ctb] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database derivative data in src/width.c)", "Maintainer": "Brodie Gaslam ", "Repository": "CRAN" }, @@ -1614,16 +1631,16 @@ }, "fs": { "Package": "fs", - "Version": "1.6.6", + "Version": "2.1.0", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", "License": "MIT + file LICENSE", "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", "BugReports": "https://github.com/r-lib/fs/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -1641,17 +1658,17 @@ "withr" ], "VignetteBuilder": "knitr", - "ByteCompile": "true", + "SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", - "SystemRequirements": "GNU make", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "generics": { @@ -1688,7 +1705,7 @@ }, "gert": { "Package": "gert", - "Version": "2.1.5", + "Version": "2.3.1", "Source": "Repository", "Type": "Package", "Title": "Simple Git Client for R", @@ -1713,110 +1730,114 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3", "SystemRequirements": "libgit2 (>= 1.0): libgit2-devel (rpm) or libgit2-dev (deb)", "Language": "en-US", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Jennifer Bryan [ctb] ()", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Jennifer Bryan [ctb] (ORCID: )", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "ggplot2": { "Package": "ggplot2", - "Version": "3.5.2", + "Version": "4.0.3", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A system for 'declaratively' creating graphics, based on \"The Grammar of Graphics\". 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'summarise-plot.R' 'summary.R' 'theme.R' 'theme-defaults.R' 'theme-current.R' 'theme-sub.R' 'utilities-break.R' 'utilities-grid.R' 'utilities-help.R' 'utilities-patterns.R' 'utilities-resolution.R' 'utilities-tidy-eval.R' 'zxx.R' 'zzz.R'", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut] (), Winston Chang [aut] (), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (), Kohske Takahashi [aut], Claus Wilke [aut] (), Kara Woo [aut] (), Hiroaki Yutani [aut] (), Dewey Dunnington [aut] (), Teun van den Brand [aut] (), Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (ORCID: ), Kohske Takahashi [aut], Claus Wilke [aut] (ORCID: ), Kara Woo [aut] (ORCID: ), Hiroaki Yutani [aut] (ORCID: ), Dewey Dunnington [aut] (ORCID: ), Teun van den Brand [aut] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "gh": { "Package": "gh", - "Version": "1.4.1", + "Version": "1.5.0", "Source": "Repository", "Title": "'GitHub' 'API'", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Minimal client to access the 'GitHub' 'API'.", "License": "MIT + file LICENSE", "URL": "https://gh.r-lib.org/, https://github.com/r-lib/gh#readme", "BugReports": "https://github.com/r-lib/gh/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.1)", "gitcreds", "glue", - "httr2", + "httr2 (>= 1.0.6)", "ini", "jsonlite", "lifecycle", "rlang (>= 1.0.0)" ], "Suggests": [ + "connectcreds", "covr", "knitr", - "mockery", "rmarkdown", "rprojroot", "spelling", @@ -1826,11 +1847,12 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-29", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", - "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -1866,10 +1888,10 @@ }, "git2rdata": { "Package": "git2rdata", - "Version": "0.5.0", + "Version": "0.5.2", "Source": "Repository", "Title": "Store and Retrieve Data.frames in a Git Repository", - "Authors@R": "c( person(\"Thierry\", \"Onkelinx\", , \"thierry.onkelinx@inbo.be\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8804-4216\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Floris\", \"Vanderhaeghe\", , \"floris.vanderhaeghe@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Peter\", \"Desmet\", , \"peter.desmet@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8442-8025\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Els\", \"Lommelen\", , \"els.lommelen@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3481-5684\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Thierry\", \"Onkelinx\", , \"thierry.onkelinx@inbo.be\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8804-4216\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Floris\", \"Vanderhaeghe\", , \"floris.vanderhaeghe@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Peter\", \"Desmet\", , \"peter.desmet@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8442-8025\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Els\", \"Lommelen\", , \"els.lommelen@inbo.be\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3481-5684\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"00j54wy13\")) )", "Description": "The git2rdata package is an R package for writing and reading dataframes as plain text files. A metadata file stores important information. 1) Storing metadata allows to maintain the classes of variables. By default, git2rdata optimizes the data for file storage. The optimization is most effective on data containing factors. The optimization makes the data less human readable. The user can turn this off when they prefer a human readable format over smaller files. Details on the implementation are available in vignette(\"plain_text\", package = \"git2rdata\"). 2) Storing metadata also allows smaller row based diffs between two consecutive commits. This is a useful feature when storing data as plain text files under version control. Details on this part of the implementation are available in vignette(\"version_control\", package = \"git2rdata\"). Although we envisioned git2rdata with a git workflow in mind, you can use it in combination with other version control systems like subversion or mercurial. 3) git2rdata is a useful tool in a reproducible and traceable workflow. vignette(\"workflow\", package = \"git2rdata\") gives a toy example. 4) vignette(\"efficiency\", package = \"git2rdata\") provides some insight into the efficiency of file storage, git repository size and speed for writing and reading.", "License": "GPL-3", "URL": "https://ropensci.github.io/git2rdata/, https://github.com/ropensci/git2rdata/, https://doi.org/10.5281/zenodo.1485309", @@ -1896,10 +1918,10 @@ "Config/checklist/keywords": "git; version control; plain text data", "Encoding": "UTF-8", "Language": "en-GB", - "RoxygenNote": "7.3.2", - "Collate": "'clean_data_path.R' 'data_package.R' 'datahash.R' 'display_metadata.R' 'git2rdata_package.R' 'write_vc.R' 'is_git2rdata.R' 'is_git2rmeta.R' 'list_data.R' 'meta.R' 'print.R' 'prune.R' 'read_vc.R' 'recent_commit.R' 'reexport.R' 'relabel.R' 'rename_variable.R' 'update_metadata.R' 'upgrade_data.R' 'utils.R' 'verify_vc.R'", + "RoxygenNote": "7.3.3", + "Collate": "'clean_data_path.R' 'data_package.R' 'datahash.R' 'display_metadata.R' 'git2rdata_package.R' 'is_git2rmeta.R' 'write_vc.R' 'is_git2rdata.R' 'list_data.R' 'meta.R' 'print.R' 'prune.R' 'read_vc.R' 'recent_commit.R' 'reexport.R' 'reinstate.R' 'relabel.R' 'rename_variable.R' 'update_metadata.R' 'upgrade_data.R' 'utils.R' 'verify_vc.R'", "NeedsCompilation": "no", - "Author": "Thierry Onkelinx [aut, cre] (, Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [ctb] (, Research Institute for Nature and Forest (INBO)), Peter Desmet [ctb] (, Research Institute for Nature and Forest (INBO)), Els Lommelen [ctb] (, Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph, fnd]", + "Author": "Thierry Onkelinx [aut, cre] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [ctb] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Peter Desmet [ctb] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Els Lommelen [ctb] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph, fnd] (ROR: )", "Maintainer": "Thierry Onkelinx ", "Repository": "CRAN" }, @@ -1939,16 +1961,16 @@ }, "glue": { "Package": "glue", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Title": "Interpreted String Literals", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", "License": "MIT + file LICENSE", "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", "BugReports": "https://github.com/tidyverse/glue/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -1958,7 +1980,6 @@ "DBI (>= 1.2.0)", "dplyr", "knitr", - "magrittr", "rlang", "rmarkdown", "RSQLite", @@ -1971,10 +1992,11 @@ "ByteCompile": "true", "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2026-04-16", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -2043,7 +2065,7 @@ }, "highr": { "Package": "highr", - "Version": "0.11", + "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", @@ -2065,21 +2087,25 @@ "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "hms": { "Package": "hms", - "Version": "1.1.3", + "Version": "1.1.4", "Source": "Repository", "Title": "Pretty Time of Day", - "Date": "2023-03-21", - "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )", + "Date": "2025-10-11", + "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = \"fnd\", comment = c(ROR = \"03wc8by49\")) )", "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.", + "License": "MIT + file LICENSE", + "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", + "BugReports": "https://github.com/tidyverse/hms/issues", "Imports": [ + "cli", "lifecycle", "methods", "pkgconfig", @@ -2092,23 +2118,18 @@ "pillar (>= 1.1.0)", "testthat (>= 3.0.0)" ], - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", - "BugReports": "https://github.com/tidyverse/hms/issues", - "RoxygenNote": "7.2.3", - "Config/testthat/edition": "3", - "Config/autostyle/scope": "line_breaks", - "Config/autostyle/strict": "false", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), R Consortium [fnd], RStudio [fnd]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd], Posit Software, PBC [fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "htmltools": { "Package": "htmltools", - "Version": "0.5.8.1", + "Version": "0.5.9", "Source": "Repository", "Type": "Package", "Title": "Tools for HTML", @@ -2142,10 +2163,10 @@ "Config/Needs/check": "knitr", "Config/Needs/website": "rstudio/quillt, bench", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'", "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (), Barret Schloerke [aut] (), Winston Chang [aut] (), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]", + "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, @@ -2205,14 +2226,14 @@ }, "httpuv": { "Package": "httpuv", - "Version": "1.6.16", + "Version": "1.6.17", "Source": "Repository", "Type": "Package", "Title": "HTTP and WebSocket Server Library", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", \"fnd\", role = \"cph\"), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", "License": "GPL (>= 2) | file LICENSE", - "URL": "https://github.com/rstudio/httpuv", + "URL": "https://rstudio.github.io/httpuv/, https://github.com/rstudio/httpuv", "BugReports": "https://github.com/rstudio/httpuv/issues", "Depends": [ "R (>= 2.15.1)" @@ -2228,37 +2249,40 @@ "callr", "curl", "jsonlite", - "testthat", + "testthat (>= 3.0.0)", "websocket" ], "LinkingTo": [ "later", "Rcpp" ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-01", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make, zlib", - "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", + "Collate": "'RcppExports.R' 'httpuv-package.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", + "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC [cph, fnd] (ROR: ), Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, "httr": { "Package": "httr", - "Version": "1.4.7", + "Version": "1.4.8", "Source": "Repository", "Title": "Tools for Working with URLs and HTTP", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", "License": "MIT + file LICENSE", "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", "BugReports": "https://github.com/r-lib/httr/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 3.6)" ], "Imports": [ - "curl (>= 5.0.2)", + "curl (>= 5.1.0)", "jsonlite", "mime", "openssl (>= 0.8)", @@ -2278,15 +2302,15 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "httr2": { "Package": "httr2", - "Version": "1.1.2", + "Version": "1.2.2", "Source": "Repository", "Title": "Perform HTTP Requests and Process the Responses", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", @@ -2295,11 +2319,11 @@ "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2", "BugReports": "https://github.com/r-lib/httr2/issues", "Depends": [ - "R (>= 4.0)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.0)", - "curl (>= 6.2.1)", + "curl (>= 6.4.0)", "glue", "lifecycle", "magrittr", @@ -2322,21 +2346,23 @@ "knitr", "later (>= 1.4.0)", "nanonext", - "paws.common", + "otel (>= 0.2.0)", + "otelsdk (>= 0.2.0)", + "paws.common (>= 0.8.0)", "promises", "rmarkdown", "testthat (>= 3.1.8)", "tibble", - "webfakes", + "webfakes (>= 1.4.0)", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", - "Config/testthat/start-first": "multi-req, resp-stream, req-perform", + "Config/testthat/start-first": "resp-stream, req-perform", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", "Maintainer": "Hadley Wickham ", @@ -2380,10 +2406,10 @@ }, "inbodb": { "Package": "inbodb", - "Version": "0.0.7", + "Version": "0.0.8", "Source": "GitHub", "Title": "Connect to and Retrieve Data from Databases on the INBO Server", - "Authors@R": "c( person(\"Els\", \"Lommelen\", , \"els.lommelen@inbo.be\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3481-5684\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Hans\", \"Van Calster\", , \"hans.vancalster@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0001-8595-8426\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Els\", \"De Bie\", , \"els.debie@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0001-7679-743X\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Floris\", \"Vanderhaeghe\", , \"floris.vanderhaeghe@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0002-6378-6229\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Frederic\", \"Piesschaert\", , \"frederic.piesschaert@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0002-5843-646X\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Toon\", \"Westra\", , \"toon.westra@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0003-2478-9459\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Stijn\", \"Van Hoey\", , \"stijnvanhoey@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-6413-3185\")), person(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Els\", \"Lommelen\", , \"els.lommelen@inbo.be\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3481-5684\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Hans\", \"Van Calster\", , \"hans.vancalster@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0001-8595-8426\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Els\", \"De Bie\", , \"els.debie@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0001-7679-743X\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Floris\", \"Vanderhaeghe\", , \"floris.vanderhaeghe@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0002-6378-6229\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Frederic\", \"Piesschaert\", , \"frederic.piesschaert@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0002-5843-646X\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Toon\", \"Westra\", , \"toon.westra@inbo.be\", role = \"aut\", comment = c(ORCID = \"0000-0003-2478-9459\", affiliation = \"Research Institute for Nature and Forest (INBO)\")), person(\"Stijn\", \"Van Hoey\", , \"stijnvanhoey@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-6413-3185\")), person(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"00j54wy13\")) )", "Description": "A bundle of functions to connect to and retrieve data from databases on the INBO server, with dedicated functions to query some of these databases.", "License": "GPL-3", "URL": "https://github.com/inbo/inbodb, https://inbo.github.io/inbodb/", @@ -2415,14 +2441,14 @@ "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", - "Author": "Els Lommelen [aut, cre] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Hans Van Calster [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Els De Bie [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Frederic Piesschaert [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Toon Westra [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Stijn Van Hoey [ctb] (ORCID: ), Research Institute for Nature and Forest (INBO) [cph, fnd]", + "Author": "Els Lommelen [aut, cre] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Hans Van Calster [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Els De Bie [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Frederic Piesschaert [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Toon Westra [aut] (ORCID: , affiliation: Research Institute for Nature and Forest (INBO)), Stijn Van Hoey [ctb] (ORCID: ), Research Institute for Nature and Forest (INBO) [cph, fnd] (ROR: )", "Maintainer": "Els Lommelen ", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "inbo", "RemoteRepo": "inbodb", "RemoteRef": "main", - "RemoteSha": "64b5f20c01c53df1c5911d977650a2cfae645acd" + "RemoteSha": "5d99d1b3ddf6d0a0e927e0dcc748081bc3ec930a" }, "ini": { "Package": "ini", @@ -2447,16 +2473,18 @@ }, "isoband": { "Package": "isoband", - "Version": "0.2.7", + "Version": "0.3.0", "Source": "Repository", "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-5147-4711\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.", "License": "MIT + file LICENSE", - "URL": "https://isoband.r-lib.org", + "URL": "https://isoband.r-lib.org, https://github.com/r-lib/isoband", "BugReports": "https://github.com/r-lib/isoband/issues", "Imports": [ + "cli", "grid", + "rlang", "utils" ], "Suggests": [ @@ -2464,21 +2492,25 @@ "ggplot2", "knitr", "magick", - "microbenchmark", + "bench", "rmarkdown", "sf", - "testthat", + "testthat (>= 3.0.0)", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-12-05", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "SystemRequirements": "C++11", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", + "LinkingTo": [ + "cpp11" + ], "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Claus O. Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", - "Maintainer": "Hadley Wickham ", + "Author": "Hadley Wickham [aut] (ORCID: ), Claus O. Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "jquerylib": { @@ -2535,7 +2567,7 @@ }, "knitr": { "Package": "knitr", - "Version": "1.50", + "Version": "1.51", "Source": "Repository", "Type": "Package", "Title": "A General-Purpose Package for Dynamic Report Generation in R", @@ -2549,12 +2581,11 @@ "highr (>= 0.11)", "methods", "tools", - "xfun (>= 0.51)", + "xfun (>= 0.52)", "yaml (>= 2.1.19)" ], "Suggests": [ "bslib", - "codetools", "DBI (>= 0.4-1)", "digest", "formatR", @@ -2566,6 +2597,8 @@ "magick", "litedown", "markdown (>= 1.3)", + "otel", + "otelsdk", "png", "ragg", "reticulate (>= 1.4)", @@ -2590,10 +2623,10 @@ "Encoding": "UTF-8", "VignetteBuilder": "litedown, knitr", "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", - "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", - "RoxygenNote": "7.3.2", + "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -2618,42 +2651,49 @@ }, "later": { "Package": "later", - "Version": "1.4.2", + "Version": "1.4.8", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", - "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later", - "BugReports": "https://github.com/r-lib/later/issues", "License": "MIT + file LICENSE", + "URL": "https://later.r-lib.org, https://github.com/r-lib/later", + "BugReports": "https://github.com/r-lib/later/issues", + "Depends": [ + "R (>= 3.5)" + ], "Imports": [ - "Rcpp (>= 0.12.9)", + "Rcpp (>= 1.0.10)", "rlang" ], - "LinkingTo": [ - "Rcpp" - ], - "RoxygenNote": "7.3.2", "Suggests": [ "knitr", "nanonext", - "R6", + "promises", "rmarkdown", - "testthat (>= 2.1.0)" + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "Rcpp" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-18", "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Charlie Gao [aut] (), Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", - "Maintainer": "Winston Chang ", + "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", + "Maintainer": "Charlie Gao ", "Repository": "CRAN" }, "lattice": { "Package": "lattice", - "Version": "0.22-7", + "Version": "0.22-9", "Source": "Repository", - "Date": "2025-03-31", + "Date": "2026-02-03", "Priority": "recommended", "Title": "Trellis Graphics for R", "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )", @@ -2684,38 +2724,13 @@ "URL": "https://lattice.r-forge.r-project.org/", "BugReports": "https://github.com/deepayan/lattice/issues", "NeedsCompilation": "yes", - "Author": "Deepayan Sarkar [aut, cre] (), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", + "Author": "Deepayan Sarkar [aut, cre] (ORCID: ), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", "Repository": "CRAN" }, - "lazyeval": { - "Package": "lazyeval", - "Version": "0.2.2", - "Source": "Repository", - "Title": "Lazy (Non-Standard) Evaluation", - "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", - "License": "GPL-3", - "LazyData": "true", - "Depends": [ - "R (>= 3.1.0)" - ], - "Suggests": [ - "knitr", - "rmarkdown (>= 0.2.65)", - "testthat", - "covr" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "6.1.1", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre], RStudio [cph]", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, "lifecycle": { "Package": "lifecycle", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Title": "Manage the Life Cycle of your Package Functions", "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2728,29 +2743,28 @@ ], "Imports": [ "cli (>= 3.4.0)", - "glue", "rlang (>= 1.1.0)" ], "Suggests": [ "covr", - "crayon", "knitr", - "lintr", + "lintr (>= 3.1.0)", "rmarkdown", "testthat (>= 3.0.1)", "tibble", "tidyverse", "tools", "vctrs", - "withr" + "withr", + "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate, usethis", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, @@ -2812,14 +2826,14 @@ }, "lubridate": { "Package": "lubridate", - "Version": "1.9.4", + "Version": "1.9.5", "Source": "Repository", "Type": "Package", "Title": "Make Dealing with Dates a Little Easier", "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", "Maintainer": "Vitalie Spinu ", "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.", - "License": "GPL (>= 2)", + "License": "MIT + file LICENSE", "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate", "BugReports": "https://github.com/tidyverse/lubridate/issues", "Depends": [ @@ -2828,7 +2842,7 @@ ], "Imports": [ "generics", - "timechange (>= 0.3.0)" + "timechange (>= 0.4.0)" ], "Suggests": [ "covr", @@ -2849,8 +2863,8 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", - "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", + "RoxygenNote": "7.3.3", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'", "NeedsCompilation": "yes", "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]", @@ -2858,11 +2872,11 @@ }, "magrittr": { "Package": "magrittr", - "Version": "2.0.3", + "Version": "2.0.5", "Source": "Repository", "Type": "Package", "Title": "A Forward-Pipe Operator for R", - "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"cre\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"", "License": "MIT + file LICENSE", "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr", @@ -2881,10 +2895,10 @@ "ByteCompile": "Yes", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]", - "Maintainer": "Lionel Henry ", + "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, "memoise": { @@ -2919,14 +2933,14 @@ }, "mgcv": { "Package": "mgcv", - "Version": "1.9-3", + "Version": "1.9-4", "Source": "Repository", "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", - "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", + "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2025) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", "Priority": "recommended", "Depends": [ - "R (>= 3.6.0)", + "R (>= 4.4.0)", "nlme (>= 3.1-64)" ], "Imports": [ @@ -2996,9 +3010,9 @@ }, "nlme": { "Package": "nlme", - "Version": "3.1-168", + "Version": "3.1-169", "Source": "Repository", - "Date": "2025-03-31", + "Date": "2026-03-27", "Priority": "recommended", "Title": "Linear and Nonlinear Mixed Effects Models", "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", @@ -3024,16 +3038,16 @@ "MailingList": "R-help@r-project.org", "URL": "https://svn.r-project.org/R-packages/trunk/nlme/", "NeedsCompilation": "yes", - "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)", + "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (ROR: )", "Maintainer": "R Core Team ", "Repository": "CRAN" }, "odbc": { "Package": "odbc", - "Version": "1.6.1", + "Version": "1.6.4.1", "Source": "Repository", "Title": "Connect to ODBC Compatible Databases (using the DBI Interface)", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Oliver\", \"Gjoneski\", role = \"aut\"), person(\"lexicalunit\", role = \"cph\", comment = \"nanodbc library\"), person(\"Google Inc.\", role = \"cph\", comment = \"cctz library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Oliver\", \"Gjoneski\", role = \"aut\"), person(\"Simon\", \"Couch\", email = \"simon.couch@posit.co\", role = \"aut\"), person(\"lexicalunit\", role = \"cph\", comment = \"nanodbc library\"), person(\"Google Inc.\", role = \"cph\", comment = \"cctz library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "A DBI-compatible interface to ODBC databases.", "License": "MIT + file LICENSE", "URL": "https://odbc.r-dbi.org, https://github.com/r-dbi/odbc, https://solutions.posit.co/connections/db/", @@ -3074,18 +3088,18 @@ "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make, An ODBC3 driver manager and drivers.", "Collate": "'RcppExports.R' 'aaa-odbc-data-type.R' 'connection-pane.R' 'dbi-connection.R' 'odbc-connection.R' 'db.R' 'dbi-driver.R' 'dbi-result.R' 'dbi-table.R' 'dbi.R' 'driver-access.R' 'driver-bigquery.R' 'driver-databricks.R' 'driver-db2.R' 'driver-hana.R' 'driver-hive.R' 'driver-impala.R' 'driver-mysql.R' 'driver-netezza.R' 'driver-oracle.R' 'driver-postgres.R' 'driver-redshift.R' 'driver-snowflake.R' 'driver-spark.R' 'driver-sql-server.R' 'driver-sqlite.R' 'driver-teradata.R' 'driver-vertica.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'odbc-config.R' 'odbc-data-sources.R' 'odbc-drivers.R' 'odbc-package.R' 'odbc.R' 'utils.R' 'zzz.R'", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut, cre], Oliver Gjoneski [aut], lexicalunit [cph] (nanodbc library), Google Inc. [cph] (cctz library), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut], Hadley Wickham [aut, cre], Oliver Gjoneski [aut], Simon Couch [aut], lexicalunit [cph] (nanodbc library), Google Inc. [cph] (cctz library), Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "openssl": { "Package": "openssl", - "Version": "2.3.2", + "Version": "2.4.0", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -3112,10 +3126,103 @@ "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Oliver Keyes [ctb]", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, + "otel": { + "Package": "otel", + "Version": "0.2.0", + "Source": "Repository", + "Title": "OpenTelemetry R API", + "Authors@R": "person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\"))", + "Description": "High-quality, ubiquitous, and portable telemetry to enable effective observability. OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the OpenTelemetry API: . Use this package as a dependency if you want to instrument your R package for OpenTelemetry.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "Depends": [ + "R (>= 3.6.0)" + ], + "Suggests": [ + "callr", + "cli", + "glue", + "jsonlite", + "otelsdk", + "processx", + "shiny", + "spelling", + "testthat (>= 3.0.0)", + "utils", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "URL": "https://otel.r-lib.org, https://github.com/r-lib/otel", + "Additional_repositories": "https://github.com/r-lib/otelsdk/releases/download/devel", + "BugReports": "https://github.com/r-lib/otel/issues", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "pak": { + "Package": "pak", + "Version": "0.9.5", + "Source": "Repository", + "Title": "Another Approach to Package Installation", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Winston\", \"Chang\", role = \"ctb\", comment = \"R6, callr, processx\"), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\"), comment = \"callr, processx\"), person(\"Hadley\", \"Wickham\", role = c(\"ctb\", \"cph\"), comment = \"cli, curl, pkgbuild, yaml\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", comment = \"curl, jsonlite\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = \"desc, pkgsearch\"), person(\"Duncan\", \"Temple Lang\", role = \"ctb\", comment = \"jsonlite\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment = \"jsonlite\"), person(\"Alec\", \"Wong\", role = \"ctb\", comment = \"keyring\"), person(\"Michel Berkelaar and lpSolve authors\", role = \"ctb\", comment = \"lpSolve\"), person(\"R Consortium\", role = \"fnd\", comment = \"pkgsearch\"), person(\"Jay\", \"Loden\", role = \"ctb\", comment = \"ps\"), person(\"Dave\", \"Daeschler\", role = \"ctb\", comment = \"ps\"), person(\"Giampaolo\", \"Rodola\", role = \"ctb\", comment = \"ps\"), person(\"Shawn\", \"Garbett\", role = \"ctb\", comment = \"yaml\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\", comment = \"yaml\"), person(\"Kirill\", \"Simonov\", role = \"ctb\", comment = \"yaml\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = \"yaml\"), person(\"Zhuoer\", \"Dong\", role = \"ctb\", comment = \"yaml\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\", comment = \"yaml\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = \"yaml\"), person(\"Brendan\", \"O'Connor\", role = \"ctb\", comment = \"yaml\"), person(\"Gregory\", \"Warnes\", role = \"ctb\", comment = \"yaml\"), person(\"Michael\", \"Quinn\", role = \"ctb\", comment = \"yaml\"), person(\"Zhian\", \"Kamvar\", role = \"ctb\", comment = \"yaml\"), person(\"Charlie\", \"Gao\", role = \"ctb\", comment = \"yaml\"), person(\"Kuba\", \"Podgórski\", role = \"ctb\", comment = \"zip\"), person(\"Rich\", \"Geldreich\", role = \"ctb\", comment = \"zip\") )", + "Description": "The goal of 'pak' is to make package installation faster and more reliable. In particular, it performs all HTTP operations in parallel, so metadata resolution and package downloads are fast. Metadata and package files are cached on the local disk as well. 'pak' has a dependency solver, so it finds version conflicts before performing the installation. This version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.", + "License": "GPL-3", + "URL": "https://pak.r-lib.org/, https://github.com/r-lib/pak", + "BugReports": "https://github.com/r-lib/pak/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "tools", + "utils" + ], + "Suggests": [ + "callr (>= 3.7.0)", + "cli (>= 3.2.0)", + "covr", + "curl (>= 4.3.2)", + "desc (>= 1.4.1)", + "filelock (>= 1.0.2)", + "gitcreds", + "glue (>= 1.6.2)", + "jsonlite (>= 1.8.0)", + "keyring (>= 1.4.0)", + "pingr", + "pkgbuild (>= 1.4.2)", + "pkgcache (>= 2.2.4)", + "pkgdepends (>= 0.9.0)", + "pkgload", + "pkgsearch (>= 3.1.0)", + "processx (>= 3.8.1)", + "ps (>= 1.6.0)", + "rstudioapi", + "testthat (>= 3.2.0)", + "webfakes", + "withr", + "yaml" + ], + "Biarch": "true", + "ByteCompile": "true", + "Config/build/extra-sources": "configure*", + "Config/needs/dependencies": "callr, cli, curl, desc, filelock, jsonlite, keyring, lpSolve, pkgbuild, pkgcache, pkgdepends, pkgsearch, processx, ps, yaml", + "Config/Needs/website": "r-lib/asciicast, rmarkdown, roxygen2, tidyverse/tidytemplate", + "Config/Needs/deploy": "cli, curl, desc, gitcreds, glue@1.6.2, gaborcsardi/jsonlite, processx, R6@2.5.1", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-13", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Posit Software, PBC [cph, fnd] (ROR: ), Winston Chang [ctb] (R6, callr, processx), Ascent Digital Services [cph, fnd] (callr, processx), Hadley Wickham [ctb, cph] (cli, curl, pkgbuild, yaml), Jeroen Ooms [ctb] (curl, jsonlite), Maëlle Salmon [ctb] (desc, pkgsearch), Duncan Temple Lang [ctb] (jsonlite), Lloyd Hilaiel [cph] (jsonlite), Alec Wong [ctb] (keyring), Michel Berkelaar and lpSolve authors [ctb] (lpSolve), R Consortium [fnd] (pkgsearch), Jay Loden [ctb] (ps), Dave Daeschler [ctb] (ps), Giampaolo Rodola [ctb] (ps), Shawn Garbett [ctb] (yaml), Jeremy Stephens [ctb] (yaml), Kirill Simonov [ctb] (yaml), Yihui Xie [ctb] (yaml), Zhuoer Dong [ctb] (yaml), Jeffrey Horner [ctb] (yaml), Will Beasley [ctb] (yaml), Brendan O'Connor [ctb] (yaml), Gregory Warnes [ctb] (yaml), Michael Quinn [ctb] (yaml), Zhian Kamvar [ctb] (yaml), Charlie Gao [ctb] (yaml), Kuba Podgórski [ctb] (zip), Rich Geldreich [ctb] (zip)", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, "pander": { "Package": "pander", "Version": "0.6.6", @@ -3181,7 +3288,7 @@ }, "pillar": { "Package": "pillar", - "Version": "1.10.2", + "Version": "1.11.1", "Source": "Repository", "Title": "Coloured Formatting for Columns", "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", @@ -3223,7 +3330,7 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3.9000", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", @@ -3232,7 +3339,7 @@ "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], RStudio [cph]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -3270,10 +3377,10 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.7", + "Version": "1.4.8", "Source": "Repository", "Title": "Find Tools Needed to Build R Packages", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", @@ -3299,10 +3406,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-30", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -3332,7 +3440,7 @@ }, "pkgdown": { "Package": "pkgdown", - "Version": "2.1.2", + "Version": "2.2.0", "Source": "Repository", "Title": "Make Static HTML Documentation for a Package", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jay\", \"Hesselberth\", role = \"aut\", comment = c(ORCID = \"0000-0002-6299-179X\")), person(\"Maëlle\", \"Salmon\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Salim\", \"Brüggemann\", role = \"aut\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -3341,7 +3449,7 @@ "URL": "https://pkgdown.r-lib.org/, https://github.com/r-lib/pkgdown", "BugReports": "https://github.com/r-lib/pkgdown/issues", "Depends": [ - "R (>= 4.0.0)" + "R (>= 4.1)" ], "Imports": [ "bslib (>= 0.5.1)", @@ -3353,6 +3461,7 @@ "fs (>= 1.4.0)", "httr2 (>= 1.0.2)", "jsonlite", + "lifecycle", "openssl", "purrr (>= 1.0.0)", "ragg (>= 1.4.0)", @@ -3362,7 +3471,7 @@ "whisker", "withr (>= 2.4.3)", "xml2 (>= 1.3.1)", - "yaml" + "yaml (>= 2.3.9)" ], "Suggests": [ "covr", @@ -3373,7 +3482,6 @@ "htmltools", "htmlwidgets", "knitr (>= 1.50)", - "lifecycle", "magick", "methods", "pkgload (>= 1.0.2)", @@ -3390,23 +3498,24 @@ "Config/potools/style": "explicit", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", - "Config/testthat/start-first": "build-article, build-quarto-article, build-reference", + "Config/testthat/start-first": "build-article, build-quarto-article, build-reference, build", + "Config/usethis/last-upkeep": "2025-09-07", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre] (), Jay Hesselberth [aut] (), Maëlle Salmon [aut] (), Olivier Roy [aut], Salim Brüggemann [aut] (), Posit Software, PBC [cph, fnd] (03wc8by49)", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Jay Hesselberth [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), Olivier Roy [aut], Salim Brüggemann [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "pkgload": { "Package": "pkgload", - "Version": "1.4.0", + "Version": "1.5.2", "Source": "Repository", "Title": "Simulate Package Installation and Attach", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.", - "License": "GPL-3", + "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org", "BugReports": "https://github.com/r-lib/pkgload/issues", "Depends": [ @@ -3423,8 +3532,7 @@ "processx", "rlang (>= 1.1.1)", "rprojroot", - "utils", - "withr (>= 2.4.3)" + "utils" ], "Suggests": [ "bitops", @@ -3435,14 +3543,15 @@ "remotes", "rstudioapi", "testthat (>= 3.2.1.1)", - "usethis" + "usethis", + "withr" ], "Config/Needs/website": "tidyverse/tidytemplate, ggplot2", "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Config/testthat/start-first": "dll", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)", "Maintainer": "Lionel Henry ", @@ -3515,10 +3624,10 @@ }, "processx": { "Package": "processx", - "Version": "3.8.6", + "Version": "3.9.0", "Source": "Repository", "Title": "Execute and Control System Processes", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", "License": "MIT + file LICENSE", "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", @@ -3527,7 +3636,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "ps (>= 1.2.0)", + "ps (>= 1.9.3)", "R6", "utils" ], @@ -3546,10 +3655,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: ), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: ), Ascent Digital Services [cph, fnd]", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -3623,45 +3733,49 @@ }, "promises": { "Package": "promises", - "Version": "1.3.2", + "Version": "1.5.0", "Source": "Repository", "Type": "Package", "Title": "Abstractions for Promise-Based Asynchronous Programming", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.", "License": "MIT + file LICENSE", "URL": "https://rstudio.github.io/promises/, https://github.com/rstudio/promises", "BugReports": "https://github.com/rstudio/promises/issues", + "Depends": [ + "R (>= 4.1.0)" + ], "Imports": [ "fastmap (>= 1.1.0)", "later", + "lifecycle", "magrittr (>= 1.5)", + "otel (>= 0.2.0)", "R6", - "Rcpp", - "rlang", - "stats" + "rlang" ], "Suggests": [ "future (>= 1.21.0)", "knitr", + "mirai", + "otelsdk (>= 0.2.0)", "purrr", + "Rcpp", "rmarkdown", "spelling", - "testthat", + "testthat (>= 3.0.0)", "vembedr" ], - "LinkingTo": [ - "later", - "Rcpp" - ], "VignetteBuilder": "knitr", - "Config/Needs/website": "rsconnect", + "Config/Needs/website": "rsconnect, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-27", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Joe Cheng ", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Joe Cheng [aut], Barret Schloerke [aut, cre] (ORCID: ), Winston Chang [aut] (ORCID: ), Charlie Gao [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Barret Schloerke ", "Repository": "CRAN" }, "protocolhelper": { @@ -3732,10 +3846,10 @@ }, "ps": { "Package": "ps", - "Version": "1.9.1", + "Version": "1.9.3", "Source": "Repository", "Title": "List, Query, Manipulate System Processes", - "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", @@ -3762,25 +3876,26 @@ "Biarch": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-28", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "purrr": { "Package": "purrr", - "Version": "1.0.4", + "Version": "1.2.2", "Source": "Repository", "Title": "Functional Programming Tools", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", "Description": "A complete and consistent functional programming toolkit for R.", "License": "MIT + file LICENSE", "URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr", "BugReports": "https://github.com/tidyverse/purrr/issues", "Depends": [ - "R (>= 4.0)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.6.1)", @@ -3790,11 +3905,13 @@ "vctrs (>= 0.6.3)" ], "Suggests": [ + "carrier (>= 0.3.0)", "covr", "dplyr (>= 0.7.8)", "httr", "knitr", "lubridate", + "mirai (>= 2.5.1)", "rmarkdown", "testthat (>= 3.0.0)", "tibble", @@ -3810,19 +3927,19 @@ "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (03wc8by49)", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "ragg": { "Package": "ragg", - "Version": "1.4.0", + "Version": "1.5.2", "Source": "Repository", "Type": "Package", "Title": "Graphic Devices Based on AGG", - "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Maintainer": "Thomas Lin Pedersen ", "Description": "Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.", "License": "MIT + file LICENSE", @@ -3842,43 +3959,46 @@ "systemfonts", "textshaping" ], + "Config/build/compilation-database": "true", "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "SystemRequirements": "freetype2, libpng, libtiff, libjpeg", "Config/testthat/edition": "3", - "Config/build/compilation-database": "true", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", - "Author": "Thomas Lin Pedersen [cre, aut] (), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", "Repository": "CRAN" }, "rappdirs": { "Package": "rappdirs", - "Version": "0.3.3", + "Version": "0.3.4", "Source": "Repository", "Type": "Package", "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs", - "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"trl\", \"cre\", \"cph\")), person(\"Sridhar\", \"Ratnakumar\", role = \"aut\"), person(\"Trent\", \"Mick\", role = \"aut\"), person(\"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(\"Eddy\", \"Petrisor\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = c(\"trl\", \"aut\"), comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Gabor\", \"Csardi\", role = \"ctb\"), person(\"Gregory\", \"Jefferis\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' () to R.", "License": "MIT + file LICENSE", "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs", "BugReports": "https://github.com/r-lib/rappdirs/issues", "Depends": [ - "R (>= 3.2)" + "R (>= 4.1)" ], "Suggests": [ - "roxygen2", - "testthat (>= 3.0.0)", "covr", + "roxygen2", + "testthat (>= 3.2.0)", "withr" ], - "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.", - "Encoding": "UTF-8", - "RoxygenNote": "7.1.1", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-05", + "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, Posit, PBC. See file LICENSE for details.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]", - "Maintainer": "Hadley Wickham ", + "Author": "Hadley Wickham [trl, cre, cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut] (ORCID: ), Gabor Csardi [ctb], Gregory Jefferis [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "rcmdcheck": { @@ -3927,29 +4047,31 @@ }, "readr": { "Package": "readr", - "Version": "2.1.5", + "Version": "2.2.0", "Source": "Repository", "Title": "Read Rectangular Text Data", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes.", "License": "MIT + file LICENSE", "URL": "https://readr.tidyverse.org, https://github.com/tidyverse/readr", "BugReports": "https://github.com/tidyverse/readr/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ - "cli (>= 3.2.0)", + "cli", "clipr", "crayon", + "glue", "hms (>= 0.4.1)", - "lifecycle (>= 0.2.0)", + "lifecycle", "methods", "R6", "rlang", "tibble", "utils", - "vroom (>= 1.6.0)" + "vroom (>= 1.7.0)", + "withr" ], "Suggests": [ "covr", @@ -3962,7 +4084,6 @@ "testthat (>= 3.2.0)", "tzdb (>= 0.1.1)", "waldo", - "withr", "xml2" ], "LinkingTo": [ @@ -3973,11 +4094,12 @@ "Config/Needs/website": "tidyverse, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "false", + "Config/usethis/last-upkeep": "2025-11-14", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd] (ROR: ), https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -4090,7 +4212,7 @@ }, "renv": { "Package": "renv", - "Version": "1.1.4", + "Version": "1.2.2", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -4108,7 +4230,9 @@ "compiler", "covr", "cpp11", + "curl", "devtools", + "generics", "gitcreds", "jsonlite", "jsonvalidate", @@ -4130,31 +4254,28 @@ "webfakes" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes", "NeedsCompilation": "no", - "Author": "Kevin Ushey [aut, cre] (), Hadley Wickham [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Kevin Ushey [aut, cre] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Kevin Ushey ", "Repository": "CRAN" }, "rex": { "Package": "rex", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Type": "Package", "Title": "Friendly Regular Expressions", - "Authors@R": "c( person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Robert\", \"Krzyzanowski\", , \"rkrzyzanowski@gmail.com\", role = \"aut\") )", + "Authors@R": "c( person(\"Kevin\", \"Ushey\", , \"kevin@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Robert\", \"Krzyzanowski\", , \"rkrzyzanowski@gmail.com\", role = \"aut\") )", "Description": "A friendly interface for the construction of regular expressions.", "License": "MIT + file LICENSE", - "URL": "https://github.com/kevinushey/rex", - "BugReports": "https://github.com/kevinushey/rex/issues", - "Imports": [ - "lazyeval" - ], + "URL": "https://rex.r-lib.org, https://github.com/r-lib/rex", + "BugReports": "https://github.com/r-lib/rex/issues", "Suggests": [ "covr", "dplyr", @@ -4172,14 +4293,18 @@ "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "Collate": "'aaa.R' 'utils.R' 'escape.R' 'capture.R' 'character_class.R' 'counts.R' 'lookarounds.R' 'match.R' 'or.R' 'rex-mode.R' 'rex.R' 'shortcuts.R' 'wildcards.R' 'zzz.R'", + "Config/Needs/website": "r-lib/pkgdown, tidyverse/tidytemplate", + "Imports": [ + "withr" + ], "NeedsCompilation": "no", "Author": "Kevin Ushey [aut, cre], Jim Hester [aut], Robert Krzyzanowski [aut]", - "Maintainer": "Kevin Ushey ", + "Maintainer": "Kevin Ushey ", "Repository": "CRAN" }, "rlang": { "Package": "rlang", - "Version": "1.1.6", + "Version": "1.2.0", "Source": "Repository", "Title": "Functions for Base Types and Core R and 'Tidyverse' Features", "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.", @@ -4188,7 +4313,7 @@ "ByteCompile": "true", "Biarch": "true", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.0.0)" ], "Imports": [ "utils" @@ -4207,7 +4332,7 @@ "pkgload", "rmarkdown", "stats", - "testthat (>= 3.2.0)", + "testthat (>= 3.3.2)", "tibble", "usethis", "vctrs (>= 0.2.3)", @@ -4217,7 +4342,7 @@ "winch" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang", "BugReports": "https://github.com/r-lib/rlang/issues", "Config/build/compilation-database": "true", @@ -4230,7 +4355,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.29", + "Version": "2.31", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -4277,25 +4402,25 @@ "Config/Needs/website": "rstudio/quillt, pkgdown", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", - "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (), Christophe Dervieux [aut] (), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (), Andrew Dunning [ctb] (), Atsushi Yasumoto [ctb, cph] (, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (), Devon Ryan [ctb] (), Frederik Aust [ctb] (), Jeff Allen [ctb], JooYoung Seo [ctb] (), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", + "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "roxygen2": { "Package": "roxygen2", - "Version": "7.3.2", + "Version": "8.0.0", "Source": "Repository", "Title": "In-Line Documentation for R", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Peter\", \"Danenberg\", , \"pcd@roxygen.org\", role = c(\"aut\", \"cph\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\"), person(\"Manuel\", \"Eugster\", role = c(\"aut\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Peter\", \"Danenberg\", , \"pcd@roxygen.org\", role = c(\"aut\", \"cph\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\"), person(\"Manuel\", \"Eugster\", role = c(\"aut\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.", "License": "MIT + file LICENSE", "URL": "https://roxygen2.r-lib.org/, https://github.com/r-lib/roxygen2", "BugReports": "https://github.com/r-lib/roxygen2/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "brew", @@ -4303,13 +4428,11 @@ "commonmark", "desc (>= 1.2.0)", "knitr", + "lifecycle", "methods", - "pkgload (>= 1.0.2)", - "purrr (>= 1.0.0)", + "pkgload (>= 1.5.2)", "R6 (>= 2.1.2)", - "rlang (>= 1.0.6)", - "stringi", - "stringr (>= 1.0.0)", + "rlang (>= 1.1.0)", "utils", "withr", "xml2" @@ -4317,6 +4440,7 @@ "Suggests": [ "covr", "R.methodsS3", + "S7", "R.oo", "rmarkdown (>= 2.16)", "testthat (>= 3.1.2)", @@ -4328,23 +4452,25 @@ "VignetteBuilder": "knitr", "Config/Needs/development": "testthat", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/roxygen2/load": "installed", + "Config/roxygen2/markdown": "TRUE", + "Config/roxygen2/version": "7.3.3.9000", "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Encoding": "UTF-8", "Language": "en-GB", - "RoxygenNote": "7.3.1.9000", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre, cph] (), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre, cph] (ORCID: ), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "rpart": { "Package": "rpart", - "Version": "4.1.24", + "Version": "4.1.27", "Source": "Repository", "Priority": "recommended", - "Date": "2025-01-06", - "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", + "Date": "2026-03-26", + "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"Brian.Ripley@R-project.org\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", "Description": "Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.", "Title": "Recursive Partitioning and Regression Trees", "Depends": [ @@ -4368,7 +4494,7 @@ }, "rprojroot": { "Package": "rprojroot", - "Version": "2.0.4", + "Version": "2.1.1", "Source": "Repository", "Title": "Finding Files in Project Subdirectories", "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))", @@ -4383,24 +4509,26 @@ "covr", "knitr", "lifecycle", - "mockr", "rlang", "rmarkdown", - "testthat (>= 3.0.0)", + "testthat (>= 3.2.0)", "withr" ], "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] ()", + "Author": "Kirill Müller [aut, cre] (ORCID: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "rstudioapi": { "Package": "rstudioapi", - "Version": "0.17.1", + "Version": "0.18.0", "Source": "Repository", "Title": "Safely Access the RStudio API", "Description": "Access the RStudio API (if available) and provide informative error messages when it's not.", @@ -4409,13 +4537,16 @@ "License": "MIT + file LICENSE", "URL": "https://rstudio.github.io/rstudioapi/, https://github.com/rstudio/rstudioapi", "BugReports": "https://github.com/rstudio/rstudioapi/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Suggests": [ "testthat", "knitr", "rmarkdown", "clipr", - "covr" + "covr", + "curl", + "jsonlite", + "withr" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", @@ -4425,28 +4556,28 @@ }, "rversions": { "Package": "rversions", - "Version": "2.1.2", + "Version": "3.0.0", "Source": "Repository", "Title": "Query 'R' Versions, Including 'r-release' and 'r-oldrel'", - "Authors@R": "c(person(given = \"Gábor\", family = \"Csárdi\", role = c(\"aut\", \"cre\"), email = \"csardi.gabor@gmail.com\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", email = \"jeroen.ooms@stat.ucla.edu\"), person(given = \"R Consortium\", role = \"fnd\"))", + "Authors@R": "c(person(given = \"Gábor\", family = \"Csárdi\", role = c(\"aut\", \"cre\"), email = \"csardi.gabor@gmail.com\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", email = \"jeroen.ooms@stat.ucla.edu\"), person(given = \"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")))", "Description": "Query the main 'R' 'SVN' repository to find the versions 'r-release' and 'r-oldrel' refer to, and also all previous 'R' versions and their release dates.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-hub/rversions, https://r-hub.github.io/rversions/", "BugReports": "https://github.com/r-hub/rversions/issues", "Imports": [ - "curl", - "utils", - "xml2 (>= 1.0.0)" + "curl" ], "Suggests": [ - "covr", - "mockery", - "testthat" + "pillar", + "testthat (>= 3.0.0)", + "webfakes", + "withr" ], "Encoding": "UTF-8", - "RoxygenNote": "7.2.1.9000", + "RoxygenNote": "7.3.3", + "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "Gábor Csárdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd]", + "Author": "Gábor Csárdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -4569,80 +4700,83 @@ }, "shiny": { "Package": "shiny", - "Version": "1.10.0", + "Version": "1.13.0", "Source": "Repository", "Type": "Package", "Title": "Web Application Framework for R", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"), person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(family = \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(family = \"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Garrick\", \"Aden-Buie\", , \"garrick@adenbuie.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(, \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(, \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.", - "License": "GPL-3 | file LICENSE", + "License": "MIT + file LICENSE", + "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", + "BugReports": "https://github.com/rstudio/shiny/issues", "Depends": [ - "R (>= 3.0.2)", - "methods" + "methods", + "R (>= 3.1.2)" ], "Imports": [ - "utils", + "bslib (>= 0.6.0)", + "cachem (>= 1.1.0)", + "cli", + "commonmark (>= 2.0.0)", + "fastmap (>= 1.1.1)", + "fontawesome (>= 0.4.0)", + "glue (>= 1.3.2)", "grDevices", + "htmltools (>= 0.5.4)", "httpuv (>= 1.5.2)", - "mime (>= 0.3)", "jsonlite (>= 0.9.16)", - "xtable", - "fontawesome (>= 0.4.0)", - "htmltools (>= 0.5.4)", + "later (>= 1.0.0)", + "lifecycle (>= 0.2.0)", + "mime (>= 0.3)", + "otel", + "promises (>= 1.5.0)", "R6 (>= 2.0)", + "rlang (>= 0.4.10)", "sourcetools", - "later (>= 1.0.0)", - "promises (>= 1.3.2)", "tools", - "crayon", - "rlang (>= 0.4.10)", - "fastmap (>= 1.1.1)", + "utils", "withr", - "commonmark (>= 1.7)", - "glue (>= 1.3.2)", - "bslib (>= 0.6.0)", - "cachem (>= 1.1.0)", - "lifecycle (>= 0.2.0)" + "xtable" ], "Suggests": [ + "Cairo (>= 1.5-5)", "coro (>= 1.1.0)", "datasets", "DT", - "Cairo (>= 1.5-5)", - "testthat (>= 3.0.0)", - "knitr (>= 1.6)", - "markdown", - "rmarkdown", + "dygraphs", + "future", "ggplot2", - "reactlog (>= 1.0.0)", + "knitr (>= 1.6)", "magrittr", - "yaml", - "future", - "dygraphs", + "markdown", + "mirai", + "otelsdk (>= 0.2.0)", "ragg", + "reactlog (>= 1.0.0)", + "rmarkdown", + "sass", "showtext", - "sass" + "testthat (>= 3.2.1)", + "watcher", + "yaml" ], - "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", - "BugReports": "https://github.com/rstudio/shiny/issues", - "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'", - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "RdMacros": "lifecycle", - "Config/testthat/edition": "3", "Config/Needs/check": "shinytest2", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'otel-attr-srcref.R' 'otel-collect.R' 'otel-enable.R' 'otel-error.R' 'otel-label.R' 'otel-reactive-update.R' 'otel-session.R' 'otel-shiny.R' 'otel-with.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'utils-tags.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'", "NeedsCompilation": "no", - "Author": "Winston Chang [aut, cre] (), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (), Barret Schloerke [aut] (), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", - "Maintainer": "Winston Chang ", + "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut, cre] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Garrick Aden-Buie [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd] (ROR: ), jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", + "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "sourcetools": { "Package": "sourcetools", - "Version": "0.1.7-1", + "Version": "0.1.7-2", "Source": "Repository", "Type": "Package", "Title": "Tools for Reading, Tokenizing and Parsing R Code", - "Author": "Kevin Ushey", + "Authors@R": "person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevinushey@gmail.com\")", "Maintainer": "Kevin Ushey ", "Description": "Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code.", "License": "MIT + file LICENSE", @@ -4656,45 +4790,46 @@ "BugReports": "https://github.com/kevinushey/sourcetools/issues", "Encoding": "UTF-8", "NeedsCompilation": "yes", + "Author": "Kevin Ushey [aut, cre]", "Repository": "CRAN" }, "spatstat": { "Package": "spatstat", - "Version": "3.3-2", + "Version": "3.6-0", "Source": "Repository", - "Date": "2025-03-22", + "Date": "2026-04-02", "Title": "Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = \"aut\", email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = \"aut\", email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")))", "Maintainer": "Adrian Baddeley ", "Depends": [ "R (>= 3.5.0)", - "spatstat.data (>= 3.1-6)", - "spatstat.univar (>= 3.1-2)", - "spatstat.geom (>= 3.3-6)", - "spatstat.random (>= 3.3-3)", - "spatstat.explore (>= 3.4-2)", - "spatstat.model (>= 3.3-5)", - "spatstat.linnet (>= 3.2-5)", + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-7)", + "spatstat.geom (>= 3.7-3)", + "spatstat.random (>= 3.4-5)", + "spatstat.explore (>= 3.8-0)", + "spatstat.model (>= 3.7-0)", + "spatstat.linnet (>= 3.5-0)", "utils" ], "Imports": [ - "spatstat.utils (>= 3.1-3)" + "spatstat.utils (>= 3.2-2)" ], "Suggests": [], "Description": "Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported. Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.", "License": "GPL (>= 2)", "URL": "http://spatstat.org/", - "NeedsCompilation": "yes", + "NeedsCompilation": "no", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat/issues", - "Author": "Adrian Baddeley [aut, cre] (), Rolf Turner [aut] (), Ege Rubak [aut] ()", + "Author": "Adrian Baddeley [aut, cre] (ORCID: ), Rolf Turner [aut] (ORCID: ), Ege Rubak [aut] (ORCID: )", "Repository": "CRAN" }, "spatstat.data": { "Package": "spatstat.data", - "Version": "3.1-6", + "Version": "3.1-9", "Source": "Repository", - "Date": "2025-03-17", + "Date": "2025-10-18", "Title": "Datasets for 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = \"aut\", email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = \"aut\", email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"W\", \"Aherne\", role=\"ctb\"), person(\"Freda\", \"Alexander\", role=\"ctb\"), person(\"Qi Wei\", \"Ang\", role=\"ctb\"), person(\"Sourav\", \"Banerjee\", role=\"ctb\"), person(\"Mark\", \"Berman\", role=\"ctb\"), person(\"R\", \"Bernhardt\", role=\"ctb\"), person(\"Thomas\", \"Berndtsen\", role=\"ctb\"), person(\"Andrew\", \"Bevan\", role=\"ctb\"), person(\"Jeffrey\", \"Betts\", role=\"ctb\"), person(\"Ray\", \"Cartwright\", role=\"ctb\"), person(\"Lucia\", \"Cobo Sanchez\", role=\"ctb\"), person(\"Richard\", \"Condit\", role=\"ctb\"), person(\"Francis\", \"Crick\", role=\"ctb\"), person(\"Marcelino\", \"de la Cruz Rot\", role=\"ctb\"), person(\"Jack\", \"Cuzick\", role=\"ctb\"), person(\"Tilman\", \"Davies\", role=\"ctb\"), person(\"Peter\", \"Diggle\", role=\"ctb\"), person(\"Michael\", \"Drinkwater\", role=\"ctb\"), person(\"Stephen\", \"Eglen\", role=\"ctb\"), person(\"Robert\", \"Edwards\", role=\"ctb\"), person(\"Johannes\", \"Elias\", role=\"ctb\"), person(\"AE\", \"Esler\", role=\"ctb\"), person(\"Gregory\", \"Evans\", role=\"ctb\"), person(\"Bernard\", \"Fingleton\", role=\"ctb\"), person(\"Olivier\", \"Flores\", role=\"ctb\"), person(\"David\", \"Ford\", role=\"ctb\"), person(\"Robin\", \"Foster\", role=\"ctb\"), person(\"Janet\", \"Franklin\", role=\"ctb\"), person(\"Neba\", \"Funwi-Gabga\", role=\"ctb\"), person(\"DJ\", \"Gerrard\", role=\"ctb\"), person(\"Andy\", \"Green\", role=\"ctb\"), person(\"Tim\", \"Griffin\", role=\"ctb\"), person(\"Ute\", \"Hahn\", role=\"ctb\"), person(\"RD\", \"Harkness\", role=\"ctb\"), person(\"Arthur\", \"Hickman\", role=\"ctb\"), person(\"Stephen\", \"Hubbell\", role=\"ctb\"), person(\"Austin\", \"Hughes\", role=\"ctb\"), person(\"Jonathan\", \"Huntington\", role=\"ctb\"), person(\"MJ\", \"Hutchings\", role=\"ctb\"), person(\"Jackie\", \"Inwald\", role=\"ctb\"), person(\"Valerie\", \"Isham\", role=\"ctb\"), person(\"Aruna\", \"Jammalamadaka\", role=\"ctb\"), person(\"Carl\", \"Knox-Robinson\", role=\"ctb\"), person(\"Mahdieh\", \"Khanmohammadi\", role=\"ctb\"), person(\"Tero\", \"Kokkila\", role=\"ctb\"), person(\"Bas\", \"Kooijman\", role=\"ctb\"), person(\"Kenneth\", \"Kosik\", role=\"ctb\"), person(\"Peter\", \"Kovesi\", role=\"ctb\"), person(\"Lily\", \"Kozmian-Ledward\", role=\"ctb\"), person(\"Robert\", \"Lamb\", role=\"ctb\"), person(\"NA\", \"Laskurain\", role=\"ctb\"), person(\"George\", \"Leser\", role=\"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role=\"ctb\"), person(\"AF\", \"Mark\", role=\"ctb\"), person(\"Sebastian\", \"Meyer\", role=\"ctb\"), person(\"Jorge\", \"Mateu\", role=\"ctb\"), person(\"Annikki\", \"Makela\", role=\"ctb\"), person(\"Enrique\", \"Miranda\", role=\"ctb\"), person(\"Nicoletta\", \"Nava\", role=\"ctb\"), person(\"M\", \"Numata\", role=\"ctb\"), person(\"Matti\", \"Nummelin\", role=\"ctb\"), person(\"Jens Randel\", \"Nyengaard\", role=\"ctb\"), person(\"Yosihiko\", \"Ogata\", role=\"ctb\"), person(\"Si\", \"Palmer\", role=\"ctb\"), person(\"Antti\", \"Penttinen\", role=\"ctb\"), person(\"Sandra\", \"Pereira\", role=\"ctb\"), person(\"Nicolas\", \"Picard\", role=\"ctb\"), person(\"William\", \"Platt\", role=\"ctb\"), person(\"Stephen\", \"Rathbun\", role=\"ctb\"), person(\"Brian\", \"Ripley\", role=\"ctb\"), person(\"Roger\", \"Sainsbury\", role=\"ctb\"), person(\"Dietrich\", \"Stoyan\", role=\"ctb\"), person(\"David\", \"Strauss\", role=\"ctb\"), person(\"L\", \"Strand\", role=\"ctb\"), person(\"Masaharu\", \"Tanemura\", role=\"ctb\"), person(\"Graham\", \"Upton\", role=\"ctb\"), person(\"Bill\", \"Venables\", role=\"ctb\"), person(\"Ulrich\", \"Vogel\", role=\"ctb\"), person(\"Sasha\", \"Voss\", role=\"ctb\"), person(\"Rasmus\", \"Waagepetersen\", role=\"ctb\"), person(\"Keith\", \"Watkins\", role=\"ctb\"), person(\"H\", \"Wendrock\", role=\"ctb\") )", "Maintainer": "Adrian Baddeley ", @@ -4719,23 +4854,23 @@ "NeedsCompilation": "no", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat.data/issues", - "Author": "Adrian Baddeley [aut, cre] (), Rolf Turner [aut] (), Ege Rubak [aut] (), W Aherne [ctb], Freda Alexander [ctb], Qi Wei Ang [ctb], Sourav Banerjee [ctb], Mark Berman [ctb], R Bernhardt [ctb], Thomas Berndtsen [ctb], Andrew Bevan [ctb], Jeffrey Betts [ctb], Ray Cartwright [ctb], Lucia Cobo Sanchez [ctb], Richard Condit [ctb], Francis Crick [ctb], Marcelino de la Cruz Rot [ctb], Jack Cuzick [ctb], Tilman Davies [ctb], Peter Diggle [ctb], Michael Drinkwater [ctb], Stephen Eglen [ctb], Robert Edwards [ctb], Johannes Elias [ctb], AE Esler [ctb], Gregory Evans [ctb], Bernard Fingleton [ctb], Olivier Flores [ctb], David Ford [ctb], Robin Foster [ctb], Janet Franklin [ctb], Neba Funwi-Gabga [ctb], DJ Gerrard [ctb], Andy Green [ctb], Tim Griffin [ctb], Ute Hahn [ctb], RD Harkness [ctb], Arthur Hickman [ctb], Stephen Hubbell [ctb], Austin Hughes [ctb], Jonathan Huntington [ctb], MJ Hutchings [ctb], Jackie Inwald [ctb], Valerie Isham [ctb], Aruna Jammalamadaka [ctb], Carl Knox-Robinson [ctb], Mahdieh Khanmohammadi [ctb], Tero Kokkila [ctb], Bas Kooijman [ctb], Kenneth Kosik [ctb], Peter Kovesi [ctb], Lily Kozmian-Ledward [ctb], Robert Lamb [ctb], NA Laskurain [ctb], George Leser [ctb], Marie-Colette van Lieshout [ctb], AF Mark [ctb], Sebastian Meyer [ctb], Jorge Mateu [ctb], Annikki Makela [ctb], Enrique Miranda [ctb], Nicoletta Nava [ctb], M Numata [ctb], Matti Nummelin [ctb], Jens Randel Nyengaard [ctb], Yosihiko Ogata [ctb], Si Palmer [ctb], Antti Penttinen [ctb], Sandra Pereira [ctb], Nicolas Picard [ctb], William Platt [ctb], Stephen Rathbun [ctb], Brian Ripley [ctb], Roger Sainsbury [ctb], Dietrich Stoyan [ctb], David Strauss [ctb], L Strand [ctb], Masaharu Tanemura [ctb], Graham Upton [ctb], Bill Venables [ctb], Ulrich Vogel [ctb], Sasha Voss [ctb], Rasmus Waagepetersen [ctb], Keith Watkins [ctb], H Wendrock [ctb]", + "Author": "Adrian Baddeley [aut, cre] (ORCID: ), Rolf Turner [aut] (ORCID: ), Ege Rubak [aut] (ORCID: ), W Aherne [ctb], Freda Alexander [ctb], Qi Wei Ang [ctb], Sourav Banerjee [ctb], Mark Berman [ctb], R Bernhardt [ctb], Thomas Berndtsen [ctb], Andrew Bevan [ctb], Jeffrey Betts [ctb], Ray Cartwright [ctb], Lucia Cobo Sanchez [ctb], Richard Condit [ctb], Francis Crick [ctb], Marcelino de la Cruz Rot [ctb], Jack Cuzick [ctb], Tilman Davies [ctb], Peter Diggle [ctb], Michael Drinkwater [ctb], Stephen Eglen [ctb], Robert Edwards [ctb], Johannes Elias [ctb], AE Esler [ctb], Gregory Evans [ctb], Bernard Fingleton [ctb], Olivier Flores [ctb], David Ford [ctb], Robin Foster [ctb], Janet Franklin [ctb], Neba Funwi-Gabga [ctb], DJ Gerrard [ctb], Andy Green [ctb], Tim Griffin [ctb], Ute Hahn [ctb], RD Harkness [ctb], Arthur Hickman [ctb], Stephen Hubbell [ctb], Austin Hughes [ctb], Jonathan Huntington [ctb], MJ Hutchings [ctb], Jackie Inwald [ctb], Valerie Isham [ctb], Aruna Jammalamadaka [ctb], Carl Knox-Robinson [ctb], Mahdieh Khanmohammadi [ctb], Tero Kokkila [ctb], Bas Kooijman [ctb], Kenneth Kosik [ctb], Peter Kovesi [ctb], Lily Kozmian-Ledward [ctb], Robert Lamb [ctb], NA Laskurain [ctb], George Leser [ctb], Marie-Colette van Lieshout [ctb], AF Mark [ctb], Sebastian Meyer [ctb], Jorge Mateu [ctb], Annikki Makela [ctb], Enrique Miranda [ctb], Nicoletta Nava [ctb], M Numata [ctb], Matti Nummelin [ctb], Jens Randel Nyengaard [ctb], Yosihiko Ogata [ctb], Si Palmer [ctb], Antti Penttinen [ctb], Sandra Pereira [ctb], Nicolas Picard [ctb], William Platt [ctb], Stephen Rathbun [ctb], Brian Ripley [ctb], Roger Sainsbury [ctb], Dietrich Stoyan [ctb], David Strauss [ctb], L Strand [ctb], Masaharu Tanemura [ctb], Graham Upton [ctb], Bill Venables [ctb], Ulrich Vogel [ctb], Sasha Voss [ctb], Rasmus Waagepetersen [ctb], Keith Watkins [ctb], H Wendrock [ctb]", "Repository": "CRAN" }, "spatstat.explore": { "Package": "spatstat.explore", - "Version": "3.4-2", + "Version": "3.8-0", "Source": "Repository", - "Date": "2025-03-20", + "Date": "2026-03-22", "Title": "Exploratory Data Analysis for the 'spatstat' Family", - "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = \"ctb\"), person(\"Warick\", \"Brown\", role = \"cph\"), person(\"Achmad\", \"Choiruddin\", role = \"ctb\"), person(\"Ya-Mei\", \"Chang\", role = \"ctb\"), person(\"Jean-Francois\", \"Coeurjolly\", role = \"ctb\"), person(\"Ottmar\", \"Cronie\", role = \"ctb\"), person(\"Tilman\", \"Davies\", role = c(\"ctb\", \"cph\")), person(\"Julian\", \"Gilbey\", role = \"ctb\"), person(\"Jonatan\", \"Gonzalez\", role = \"ctb\"), person(\"Yongtao\", \"Guan\", role = \"ctb\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Martin\", \"Hazelton\", role = \"ctb\"), person(\"Kassel\", \"Hingee\", role = c(\"ctb\", \"cph\")), person(\"Abdollah\", \"Jalilian\", role = \"ctb\"), person(\"Frederic\", \"Lavancier\", role = \"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role = c(\"ctb\", \"cph\")), person(\"Greg\", \"McSwiggan\", role = \"ctb\"), person(\"Robin K\", \"Milne\", role = \"cph\"), person(\"Tuomas\", \"Rajala\", role = \"ctb\"), person(\"Suman\", \"Rakshit\", role = c(\"ctb\", \"cph\")), person(\"Dominic\", \"Schuhmacher\", role = \"ctb\"), person(\"Rasmus\", \"Plenge Waagepetersen\", role = \"ctb\"), person(\"Hangsheng\", \"Wang\", role = \"ctb\"), person(\"Tingting\", \"Zhan\", role=\"ctb\"))", + "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = \"ctb\"), person(\"Warick\", \"Brown\", role = \"cph\"), person(\"Achmad\", \"Choiruddin\", role = \"ctb\"), person(\"Ya-Mei\", \"Chang\", role = \"ctb\"), person(\"Jean-Francois\", \"Coeurjolly\", role = \"ctb\"), person(\"Lucia\", \"Cobo Sanchez\", role = c(\"ctb\", \"cph\")), person(\"Ottmar\", \"Cronie\", role = \"ctb\"), person(\"Tilman\", \"Davies\", role = c(\"ctb\", \"cph\")), person(\"Julian\", \"Gilbey\", role = \"ctb\"), person(\"Jonatan\", \"Gonzalez\", role = \"ctb\"), person(\"Yongtao\", \"Guan\", role = \"ctb\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Martin\", \"Hazelton\", role = \"ctb\"), person(\"Kassel\", \"Hingee\", role = c(\"ctb\", \"cph\")), person(\"Abdollah\", \"Jalilian\", role = \"ctb\"), person(\"Frederic\", \"Lavancier\", role = \"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role = c(\"ctb\", \"cph\")), person(\"Greg\", \"McSwiggan\", role = \"ctb\"), person(\"Robin K\", \"Milne\", role = \"cph\"), person(\"Tuomas\", \"Rajala\", role = \"ctb\"), person(\"Suman\", \"Rakshit\", role = c(\"ctb\", \"cph\")), person(\"Dominic\", \"Schuhmacher\", role = \"ctb\"), person(\"Rasmus\", \"Plenge Waagepetersen\", role = \"ctb\"), person(\"Hangsheng\", \"Wang\", role = \"ctb\"), person(\"Tingting\", \"Zhan\", role=\"ctb\"))", "Maintainer": "Adrian Baddeley ", "Depends": [ "R (>= 3.5.0)", - "spatstat.data (>= 3.1-2)", - "spatstat.univar (>= 3.1-2)", - "spatstat.geom (>= 3.3-6)", - "spatstat.random (>= 3.3-2)", + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-7)", + "spatstat.geom (>= 3.7-2)", + "spatstat.random (>= 3.4-5)", "stats", "graphics", "grDevices", @@ -4744,8 +4879,8 @@ "nlme" ], "Imports": [ - "spatstat.utils (>= 3.1-0)", - "spatstat.sparse (>= 3.1-0)", + "spatstat.utils (>= 3.2-2)", + "spatstat.sparse (>= 3.1)", "goftest (>= 1.2-2)", "Matrix", "abind" @@ -4756,9 +4891,9 @@ "locfit", "spatial", "fftwtools (>= 0.9-8)", - "spatstat.linnet (>= 3.2-1)", - "spatstat.model (>= 3.3-1)", - "spatstat (>= 3.1-1)" + "spatstat.linnet (>= 3.4)", + "spatstat.model (>= 3.6)", + "spatstat (>= 3.5)" ], "Description": "Functionality for exploratory data analysis and nonparametric analysis of spatial data, mainly spatial point patterns, in the 'spatstat' family of packages. (Excludes analysis of spatial data on a linear network, which is covered by the separate package 'spatstat.linnet'.) Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.", "License": "GPL (>= 2)", @@ -4766,21 +4901,21 @@ "NeedsCompilation": "yes", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat.explore/issues", - "Author": "Adrian Baddeley [aut, cre, cph] (), Rolf Turner [aut, cph] (), Ege Rubak [aut, cph] (), Kasper Klitgaard Berthelsen [ctb], Warick Brown [cph], Achmad Choiruddin [ctb], Ya-Mei Chang [ctb], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb, cph], Julian Gilbey [ctb], Jonatan Gonzalez [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Martin Hazelton [ctb], Kassel Hingee [ctb, cph], Abdollah Jalilian [ctb], Frederic Lavancier [ctb], Marie-Colette van Lieshout [ctb, cph], Greg McSwiggan [ctb], Robin K Milne [cph], Tuomas Rajala [ctb], Suman Rakshit [ctb, cph], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb], Tingting Zhan [ctb]", + "Author": "Adrian Baddeley [aut, cre, cph] (ORCID: ), Rolf Turner [aut, cph] (ORCID: ), Ege Rubak [aut, cph] (ORCID: ), Kasper Klitgaard Berthelsen [ctb], Warick Brown [cph], Achmad Choiruddin [ctb], Ya-Mei Chang [ctb], Jean-Francois Coeurjolly [ctb], Lucia Cobo Sanchez [ctb, cph], Ottmar Cronie [ctb], Tilman Davies [ctb, cph], Julian Gilbey [ctb], Jonatan Gonzalez [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Martin Hazelton [ctb], Kassel Hingee [ctb, cph], Abdollah Jalilian [ctb], Frederic Lavancier [ctb], Marie-Colette van Lieshout [ctb, cph], Greg McSwiggan [ctb], Robin K Milne [cph], Tuomas Rajala [ctb], Suman Rakshit [ctb, cph], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb], Tingting Zhan [ctb]", "Repository": "CRAN" }, "spatstat.geom": { "Package": "spatstat.geom", - "Version": "3.4-1", + "Version": "3.7-3", "Source": "Repository", - "Date": "2025-05-20", + "Date": "2026-03-23", "Title": "Geometrical Functionality of the 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Warick\", \"Brown\" , role = \"ctb\"), person(\"Tilman\", \"Davies\", role = \"ctb\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Martin\", \"Hazelton\", role = \"ctb\"), person(\"Abdollah\", \"Jalilian\", role = \"ctb\"), person(\"Greg\", \"McSwiggan\", role = c(\"ctb\", \"cph\")), person(\"Sebastian\", \"Meyer\", role = c(\"ctb\", \"cph\")), person(\"Jens\", \"Oehlschlaegel\", role = c(\"ctb\", \"cph\")), person(\"Suman\", \"Rakshit\", role = \"ctb\"), person(\"Dominic\", \"Schuhmacher\", role = \"ctb\"), person(\"Rasmus\", \"Waagepetersen\", role = \"ctb\"))", "Maintainer": "Adrian Baddeley ", "Depends": [ "R (>= 3.5.0)", - "spatstat.data (>= 3.1)", - "spatstat.univar (>= 3.1)", + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-6)", "stats", "graphics", "grDevices", @@ -4788,18 +4923,18 @@ "methods" ], "Imports": [ - "spatstat.utils (>= 3.1-4)", + "spatstat.utils (>= 3.2-2)", "deldir (>= 1.0-2)", "polyclip (>= 1.10)" ], "Suggests": [ - "spatstat.random (>= 3.3)", - "spatstat.explore (>= 3.3)", - "spatstat.model (>= 3.3)", - "spatstat.linnet (>= 3.2)", + "spatstat.random (>= 3.4-3)", + "spatstat.explore (>= 3.7)", + "spatstat.model (>= 3.5)", + "spatstat.linnet (>= 3.4)", "spatial", "fftwtools (>= 0.9-8)", - "spatstat (>= 3.3)" + "spatstat (>= 3.5)" ], "Description": "Defines spatial data types and supports geometrical operations on them. Data types include point patterns, windows (domains), pixel images, line segment patterns, tessellations and hyperframes. Capabilities include creation and manipulation of data (using command line or graphical interaction), plotting, geometrical operations (rotation, shift, rescale, affine transformation), convex hull, discretisation and pixellation, Dirichlet tessellation, Delaunay triangulation, pairwise distances, nearest-neighbour distances, distance transform, morphological operations (erosion, dilation, closing, opening), quadrat counting, geometrical measurement, geometrical covariance, colour maps, calculus on spatial domains, Gaussian blur, level sets of images, transects of images, intersections between objects, minimum distance matching. (Excludes spatial data on a network, which are supported by the package 'spatstat.linnet'.)", "License": "GPL (>= 2)", @@ -4812,9 +4947,9 @@ }, "spatstat.linnet": { "Package": "spatstat.linnet", - "Version": "3.2-5", + "Version": "3.5-0", "Source": "Repository", - "Date": "2025-01-22", + "Date": "2026-03-31", "Title": "Linear Networks Functionality of the 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Greg\", \"McSwiggan\", role = c(\"aut\", \"cph\")), person(\"Tilman\", \"Davies\", role = c(\"ctb\", \"cph\")), person(\"Mehdi\", \"Moradi\", role = c(\"ctb\", \"cph\")), person(\"Suman\", \"Rakshit\", role = c(\"ctb\", \"cph\")), person(\"Ottmar\", \"Cronie\", role = \"ctb\"))", "Maintainer": "Adrian Baddeley ", @@ -4825,22 +4960,22 @@ "grDevices", "methods", "utils", - "spatstat.data (>= 3.1-4)", - "spatstat.univar (>= 3.1-1)", - "spatstat.geom (>= 3.3-4)", - "spatstat.random (>= 3.3-2)", - "spatstat.explore (>= 3.3-3)", - "spatstat.model (>= 3.3-4)" + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-7)", + "spatstat.geom (>= 3.7-3)", + "spatstat.random (>= 3.4-5)", + "spatstat.explore (>= 3.8)", + "spatstat.model (>= 3.7)" ], "Imports": [ "Matrix", - "spatstat.utils (>= 3.1-2)", - "spatstat.sparse (>= 3.1-0)" + "spatstat.utils (>= 3.2-2)", + "spatstat.sparse (>= 3.1)" ], "Suggests": [ "goftest", "locfit", - "spatstat (>= 3.0)" + "spatstat (>= 3.5)" ], "Description": "Defines types of spatial data on a linear network and provides functionality for geometrical operations, data analysis and modelling of data on a linear network, in the 'spatstat' family of packages. Contains definitions and support for linear networks, including creation of networks, geometrical measurements, topological connectivity, geometrical operations such as inserting and deleting vertices, intersecting a network with another object, and interactive editing of networks. Data types defined on a network include point patterns, pixel images, functions, and tessellations. Exploratory methods include kernel estimation of intensity on a network, K-functions and pair correlation functions on a network, simulation envelopes, nearest neighbour distance and empty space distance, relative risk estimation with cross-validated bandwidth selection. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported. Parametric models can be fitted to point pattern data using the function lppm() similar to glm(). Only Poisson models are implemented so far. Models may involve dependence on covariates and dependence on marks. Models are fitted by maximum likelihood. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots. Random point patterns on a network can be generated using a variety of models.", "License": "GPL (>= 2)", @@ -4848,24 +4983,24 @@ "NeedsCompilation": "yes", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat.linnet/issues", - "Author": "Adrian Baddeley [aut, cre, cph] (), Rolf Turner [aut, cph] (), Ege Rubak [aut, cph] (), Greg McSwiggan [aut, cph], Tilman Davies [ctb, cph], Mehdi Moradi [ctb, cph], Suman Rakshit [ctb, cph], Ottmar Cronie [ctb]", + "Author": "Adrian Baddeley [aut, cre, cph] (ORCID: ), Rolf Turner [aut, cph] (ORCID: ), Ege Rubak [aut, cph] (ORCID: ), Greg McSwiggan [aut, cph], Tilman Davies [ctb, cph], Mehdi Moradi [ctb, cph], Suman Rakshit [ctb, cph], Ottmar Cronie [ctb]", "Repository": "CRAN" }, "spatstat.model": { "Package": "spatstat.model", - "Version": "3.3-5", + "Version": "3.7-0", "Source": "Repository", - "Date": "2025-03-22", + "Date": "2026-03-29", "Title": "Parametric Statistical Modelling and Inference for the 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = \"ctb\"), person(\"Achmad\", \"Choiruddin\", role = c(\"ctb\", \"cph\")), person(\"Jean-Francois\", \"Coeurjolly\", role = \"ctb\"), person(\"Ottmar\", \"Cronie\", role = \"ctb\"), person(\"Tilman\", \"Davies\", role = \"ctb\"), person(\"Julian\", \"Gilbey\", role = \"ctb\"), person(\"Yongtao\", \"Guan\", role = \"ctb\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Martin\", \"Hazelton\", role = \"ctb\"), person(\"Kassel\", \"Hingee\", role = \"ctb\"), person(\"Abdollah\", \"Jalilian\", role = \"ctb\"), person(\"Frederic\", \"Lavancier\", role = \"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role = \"ctb\"), person(\"Bethany\", \"Macdonald\", role = \"ctb\"), person(\"Greg\", \"McSwiggan\", role = \"ctb\"), person(\"Tuomas\", \"Rajala\", role = \"ctb\"), person(\"Suman\", \"Rakshit\", role = c(\"ctb\", \"cph\")), person(\"Dominic\", \"Schuhmacher\", role = \"ctb\"), person(\"Rasmus\", \"Plenge Waagepetersen\", role = \"ctb\"), person(\"Hangsheng\", \"Wang\", role = \"ctb\"))", "Maintainer": "Adrian Baddeley ", "Depends": [ "R (>= 3.5.0)", - "spatstat.data (>= 3.1-4)", - "spatstat.univar (>= 3.1-1)", - "spatstat.geom (>= 3.3-4)", - "spatstat.random (>= 3.3-2)", - "spatstat.explore (>= 3.3-0)", + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-7)", + "spatstat.geom (>= 3.7-3)", + "spatstat.random (>= 3.4-5)", + "spatstat.explore (>= 3.8-0)", "stats", "graphics", "grDevices", @@ -4875,8 +5010,8 @@ "rpart" ], "Imports": [ - "spatstat.utils (>= 3.1-2)", - "spatstat.sparse (>= 3.1-0)", + "spatstat.utils (>= 3.2-2)", + "spatstat.sparse (>= 3.1)", "mgcv", "Matrix", "abind", @@ -4891,8 +5026,8 @@ "fftwtools (>= 0.9-8)", "nleqslv", "glmnet", - "spatstat.linnet (>= 3.2-2)", - "spatstat (>= 3.3)" + "spatstat.linnet (>= 3.4-1)", + "spatstat (>= 3.5-1)" ], "Description": "Functionality for parametric statistical modelling and inference for spatial data, mainly spatial point patterns, in the 'spatstat' family of packages. (Excludes analysis of spatial data on a linear network, which is covered by the separate package 'spatstat.linnet'.) Supports parametric modelling, formal statistical inference, and model validation. Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope tests, Dao-Genton test, balanced independent two-stage test), confidence intervals for parameters, and prediction intervals for point counts. Model validation techniques include leverage, influence, partial residuals, added variable plots, diagnostic plots, pseudoscore residual plots, model compensators and Q-Q plots.", "License": "GPL (>= 2)", @@ -4900,36 +5035,36 @@ "NeedsCompilation": "yes", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat.model/issues", - "Author": "Adrian Baddeley [aut, cre, cph] (), Rolf Turner [aut, cph] (), Ege Rubak [aut, cph] (), Kasper Klitgaard Berthelsen [ctb], Achmad Choiruddin [ctb, cph], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb], Julian Gilbey [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Martin Hazelton [ctb], Kassel Hingee [ctb], Abdollah Jalilian [ctb], Frederic Lavancier [ctb], Marie-Colette van Lieshout [ctb], Bethany Macdonald [ctb], Greg McSwiggan [ctb], Tuomas Rajala [ctb], Suman Rakshit [ctb, cph], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb]", + "Author": "Adrian Baddeley [aut, cre, cph] (ORCID: ), Rolf Turner [aut, cph] (ORCID: ), Ege Rubak [aut, cph] (ORCID: ), Kasper Klitgaard Berthelsen [ctb], Achmad Choiruddin [ctb, cph], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb], Julian Gilbey [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Martin Hazelton [ctb], Kassel Hingee [ctb], Abdollah Jalilian [ctb], Frederic Lavancier [ctb], Marie-Colette van Lieshout [ctb], Bethany Macdonald [ctb], Greg McSwiggan [ctb], Tuomas Rajala [ctb], Suman Rakshit [ctb, cph], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb]", "Repository": "CRAN" }, "spatstat.random": { "Package": "spatstat.random", - "Version": "3.3-3", + "Version": "3.4-5", "Source": "Repository", - "Date": "2025-03-19", + "Date": "2026-03-22", "Title": "Random Generation Functionality for the 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Tilman\", \"Davies\", role = c(\"aut\", \"cph\"), comment=c(ORCID=\"0000-0003-0565-1825\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = c(\"ctb\", \"cph\")), person(\"David\", \"Bryant\", role = c(\"ctb\", \"cph\")), person(\"Ya-Mei\", \"Chang\", role = c(\"ctb\", \"cph\"), email = \"yamei628@gmail.com\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Abdollah\", \"Jalilian\", role = \"ctb\"), person(\"Dominic\", \"Schuhmacher\", role = c(\"ctb\", \"cph\")), person(\"Rasmus\", \"Plenge Waagepetersen\", role = c(\"ctb\", \"cph\")))", "Maintainer": "Adrian Baddeley ", "Depends": [ "R (>= 3.5.0)", - "spatstat.data (>= 3.1)", - "spatstat.univar (>= 3.1)", - "spatstat.geom (>= 3.3-6)", + "spatstat.data (>= 3.1-9)", + "spatstat.univar (>= 3.1-6)", + "spatstat.geom (>= 3.7-0)", "stats", "utils", "methods", "grDevices" ], "Imports": [ - "spatstat.utils (>= 3.1-2)" + "spatstat.utils (>= 3.2-2)" ], "Suggests": [ "spatial", - "spatstat.linnet (>= 3.2)", + "spatstat.linnet (>= 3.4)", "spatstat.explore", "spatstat.model", - "spatstat (>= 3.3)", + "spatstat (>= 3.5)", "gsl" ], "Description": "Functionality for random generation of spatial data in the 'spatstat' family of packages. Generates random spatial patterns of points according to many simple rules (complete spatial randomness, Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns (thinning, random shift, jittering), simulated realisations of random point processes including simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes (using direct, Brix-Kendall, or hybrid algorithms), log-Gaussian Cox processes, product shot noise cluster processes and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm, alternating Gibbs sampler, or coupling-from-the-past perfect simulation). Also generates random spatial patterns of line segments, random tessellations, and random images (random noise, random mosaics). Excludes random generation on a linear network, which is covered by the separate package 'spatstat.linnet'.", @@ -4938,7 +5073,7 @@ "NeedsCompilation": "yes", "ByteCompile": "true", "BugReports": "https://github.com/spatstat/spatstat.random/issues", - "Author": "Adrian Baddeley [aut, cre, cph] (), Rolf Turner [aut, cph] (), Ege Rubak [aut, cph] (), Tilman Davies [aut, cph] (), Kasper Klitgaard Berthelsen [ctb, cph], David Bryant [ctb, cph], Ya-Mei Chang [ctb, cph], Ute Hahn [ctb], Abdollah Jalilian [ctb], Dominic Schuhmacher [ctb, cph], Rasmus Plenge Waagepetersen [ctb, cph]", + "Author": "Adrian Baddeley [aut, cre, cph] (ORCID: ), Rolf Turner [aut, cph] (ORCID: ), Ege Rubak [aut, cph] (ORCID: ), Tilman Davies [aut, cph] (ORCID: ), Kasper Klitgaard Berthelsen [ctb, cph], David Bryant [ctb, cph], Ya-Mei Chang [ctb, cph], Ute Hahn [ctb], Abdollah Jalilian [ctb], Dominic Schuhmacher [ctb, cph], Rasmus Plenge Waagepetersen [ctb, cph]", "Repository": "CRAN" }, "spatstat.sparse": { @@ -4972,9 +5107,9 @@ }, "spatstat.univar": { "Package": "spatstat.univar", - "Version": "3.1-3", + "Version": "3.1-7", "Source": "Repository", - "Date": "2025-05-07", + "Date": "2026-02-18", "Title": "One-Dimensional Probability Distribution Support for the 'spatstat' Family", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(c(\"Tilman\", \"M.\"), \"Davies\", role = c(\"aut\", \"ctb\", \"cph\"), email = \"Tilman.Davies@otago.ac.nz\", comment = c(ORCID=\"0000-0003-0565-1825\")), person(c(\"Martin\", \"L.\"), \"Hazelton\", role = c(\"aut\", \"ctb\", \"cph\"), email = \"Martin.Hazelton@otago.ac.nz\", comment = c(ORCID=\"0000-0001-7831-725X\")), person(\"Ege\", \"Rubak\", role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Rolf\", \"Turner\", role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Greg\", \"McSwiggan\", role = c(\"ctb\", \"cph\")))", "Maintainer": "Adrian Baddeley ", @@ -4983,7 +5118,7 @@ "stats" ], "Imports": [ - "spatstat.utils (>= 3.1-2)", + "spatstat.utils (>= 3.2-2)", "graphics" ], "Description": "Estimation of one-dimensional probability distributions including kernel density estimation, weighted empirical cumulative distribution functions, Kaplan-Meier and reduced-sample estimators for right-censored data, heat kernels, kernel properties, quantiles and integration.", @@ -4997,9 +5132,9 @@ }, "spatstat.utils": { "Package": "spatstat.utils", - "Version": "3.1-4", + "Version": "3.2-2", "Source": "Repository", - "Date": "2025-05-15", + "Date": "2026-03-10", "Title": "Utility Functions for 'spatstat'", "Authors@R": "c(person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\", role = \"aut\", email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\", \"Rubak\", role = \"aut\", email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")))", "Maintainer": "Adrian Baddeley ", @@ -5055,7 +5190,7 @@ }, "stringr": { "Package": "stringr", - "Version": "1.5.1", + "Version": "1.6.0", "Source": "Repository", "Title": "Simple, Consistent Wrappers for Common String Operations", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -5064,7 +5199,7 @@ "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr", "BugReports": "https://github.com/tidyverse/stringr/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1.0)" ], "Imports": [ "cli", @@ -5088,10 +5223,11 @@ ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/potools/style": "explicit", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", @@ -5123,7 +5259,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.2.3", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -5146,9 +5282,12 @@ "Suggests": [ "covr", "farver", + "ggplot2", "graphics", "knitr", + "ragg", "rmarkdown", + "svglite", "testthat (>= 2.1.0)" ], "LinkingTo": [ @@ -5168,19 +5307,20 @@ }, "tensor": { "Package": "tensor", - "Version": "1.5", + "Version": "1.5.1", "Source": "Repository", - "Date": "04.05.12", - "Title": "Tensor product of arrays", - "Author": "Jonathan Rougier ", - "Maintainer": "Jonathan Rougier ", + "Title": "Tensor Product of Arrays", + "Authors@R": "person(given = \"Jonathan\", family = \"Rougier\", role = c(\"aut\", \"cre\"), email = \"j.c.rougier@bristol.ac.uk\")", "Description": "The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals.", "License": "GPL (>= 2)", - "Repository": "CRAN" + "Repository": "CRAN", + "NeedsCompilation": "no", + "Author": "Jonathan Rougier [aut, cre]", + "Maintainer": "Jonathan Rougier " }, "testthat": { "Package": "testthat", - "Version": "3.2.3", + "Version": "3.3.2", "Source": "Repository", "Title": "Unit Testing for R", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Implementation of utils::recover()\") )", @@ -5189,34 +5329,37 @@ "URL": "https://testthat.r-lib.org, https://github.com/r-lib/testthat", "BugReports": "https://github.com/r-lib/testthat/issues", "Depends": [ - "R (>= 3.6.0)" + "R (>= 4.1.0)" ], "Imports": [ - "brio (>= 1.1.3)", - "callr (>= 3.7.3)", - "cli (>= 3.6.1)", - "desc (>= 1.4.2)", - "digest (>= 0.6.33)", - "evaluate (>= 1.0.1)", - "jsonlite (>= 1.8.7)", - "lifecycle (>= 1.0.3)", + "brio (>= 1.1.5)", + "callr (>= 3.7.6)", + "cli (>= 3.6.5)", + "desc (>= 1.4.3)", + "evaluate (>= 1.0.4)", + "jsonlite (>= 2.0.0)", + "lifecycle (>= 1.0.4)", "magrittr (>= 2.0.3)", "methods", - "pkgload (>= 1.3.2.1)", + "pkgload (>= 1.4.0)", "praise (>= 1.0.0)", - "processx (>= 3.8.2)", - "ps (>= 1.7.5)", - "R6 (>= 2.5.1)", - "rlang (>= 1.1.1)", + "processx (>= 3.8.6)", + "ps (>= 1.9.1)", + "R6 (>= 2.6.1)", + "rlang (>= 1.1.6)", "utils", - "waldo (>= 0.6.0)", + "waldo (>= 0.6.2)", "withr (>= 3.0.2)" ], "Suggests": [ "covr", "curl (>= 0.9.5)", "diffviewer (>= 0.1.0)", + "digest (>= 0.6.33)", + "gh", "knitr", + "otel", + "otelsdk", "rmarkdown", "rstudioapi", "S7", @@ -5231,7 +5374,7 @@ "Config/testthat/parallel": "true", "Config/testthat/start-first": "watcher, parallel*", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Implementation of utils::recover())", "Maintainer": "Hadley Wickham ", @@ -5239,11 +5382,11 @@ }, "textshaping": { "Package": "textshaping", - "Version": "1.0.1", + "Version": "1.0.5", "Source": "Repository", "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.", + "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/textshaping", "BugReports": "https://github.com/r-lib/textshaping/issues", @@ -5254,7 +5397,7 @@ "lifecycle", "stats", "stringi", - "systemfonts (>= 1.1.0)", + "systemfonts (>= 1.3.0)", "utils" ], "Suggests": [ @@ -5283,10 +5426,10 @@ }, "tibble": { "Package": "tibble", - "Version": "3.2.1", + "Version": "3.3.1", "Source": "Repository", "Title": "Simple Data Frames", - "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))", + "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Romain\", \"Francois\", , \"romain@r-enthusiasts.com\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.", "License": "MIT + file LICENSE", "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble", @@ -5295,7 +5438,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "fansi (>= 0.4.0)", + "cli", "lifecycle (>= 1.0.0)", "magrittr", "methods", @@ -5303,7 +5446,7 @@ "pkgconfig", "rlang (>= 1.0.2)", "utils", - "vctrs (>= 0.4.2)" + "vctrs (>= 0.5.0)" ], "Suggests": [ "bench", @@ -5311,9 +5454,6 @@ "blob", "brio", "callr", - "cli", - "covr", - "crayon (>= 1.3.4)", "DiagrammeR", "dplyr", "evaluate", @@ -5324,9 +5464,7 @@ "htmltools", "knitr", "lubridate", - "mockr", "nycflights13", - "pkgbuild", "pkgload", "purrr", "rmarkdown", @@ -5336,17 +5474,18 @@ "withr" ], "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/autostyle/rmd": "false", "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "true", - "Config/autostyle/rmd": "false", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/usethis/last-upkeep": "2025-06-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "yes", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -5395,7 +5534,7 @@ }, "timechange": { "Package": "timechange", - "Version": "0.3.0", + "Version": "0.4.0", "Source": "Repository", "Title": "Efficient Manipulation of Date-Times", "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", @@ -5412,7 +5551,7 @@ "testthat (>= 0.7.1.99)", "knitr" ], - "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "BugReports": "https://github.com/vspinu/timechange/issues", "URL": "https://github.com/vspinu/timechange/", "RoxygenNote": "7.2.1", @@ -5423,7 +5562,7 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.57", + "Version": "0.59", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -5440,9 +5579,9 @@ "URL": "https://github.com/rstudio/tinytex", "BugReports": "https://github.com/rstudio/tinytex/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre, cph] (), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (), Devon Ryan [ctb] (), Ethan Heinzen [ctb], Fernando Cagua [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: ), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Ethan Heinzen [ctb], Fernando Cagua [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -5537,13 +5676,12 @@ }, "urltools": { "Package": "urltools", - "Version": "1.7.3", + "Version": "1.7.3.1", "Source": "Repository", "Type": "Package", "Title": "Vectorised Tools for URL Handling and Parsing", "Date": "2019-04-14", - "Author": "Os Keyes [aut, cre], Jay Jacobs [aut, cre], Drew Schmidt [aut], Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb], Adam M. Costello [cph], Jeff Bezanson [cph], Peter Meilstrup [ctb], Xueyuan Jiang [ctb]", - "Maintainer": "Os Keyes ", + "Authors@R": "c(person(given = \"Os\", family = \"Keyes\", role = c(\"aut\", \"cre\"), email = \"ironholds@gmail.com\"), person(given = \"Jay\", family = \"Jacobs\", role = \"aut\"), person(given = \"Drew\", family = \"Schmidt\", role = \"aut\"), person(given = \"Mark\", family = \"Greenaway\", role = \"ctb\"), person(given = \"Bob\", family = \"Rudis\", role = \"ctb\"), person(given = \"Alex\", family = \"Pinto\", role = \"ctb\"), person(given = \"Maryam\", family = \"Khezrzadeh\", role = \"ctb\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = c(\"Adam\", \"M.\"), family = \"Costello\", role = \"cph\"), person(given = \"Jeff\", family = \"Bezanson\", role = \"cph\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = \"Xueyuan\", family = \"Jiang\", role = \"ctb\"))", "Description": "A toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.", "License": "MIT + file LICENSE", "LazyData": "TRUE", @@ -5568,20 +5706,22 @@ "R (>= 2.10)" ], "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "CRAN", + "Author": "Os Keyes [aut, cre], Jay Jacobs [aut], Drew Schmidt [aut], Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb], Adam M. Costello [cph], Jeff Bezanson [cph], Peter Meilstrup [ctb], Xueyuan Jiang [ctb]", + "Maintainer": "Os Keyes " }, "usethis": { "Package": "usethis", - "Version": "3.1.0", + "Version": "3.2.1", "Source": "Repository", "Title": "Automate Package and Project Setup", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Andy\", \"Teucher\", , \"andy.teucher@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7840-692X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Andy\", \"Teucher\", , \"andy.teucher@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7840-692X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.", "License": "MIT + file LICENSE", "URL": "https://usethis.r-lib.org, https://github.com/r-lib/usethis", "BugReports": "https://github.com/r-lib/usethis/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.1)", @@ -5598,7 +5738,7 @@ "purrr", "rappdirs", "rlang (>= 1.1.0)", - "rprojroot (>= 1.2)", + "rprojroot (>= 2.1.1)", "rstudioapi", "stats", "tools", @@ -5612,34 +5752,35 @@ "knitr", "magick", "pkgload (>= 1.3.2.1)", + "quarto (>= 1.5.1)", "rmarkdown", "roxygen2 (>= 7.1.2)", "spelling (>= 1.2)", - "styler (>= 1.2.0)", "testthat (>= 3.1.8)" ], "Config/Needs/website": "r-lib/asciicast, tidyverse/tidytemplate, xml2", "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Config/testthat/start-first": "github-actions, release", + "Config/usethis/last-upkeep": "2025-04-22", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut] (), Jennifer Bryan [aut, cre] (), Malcolm Barrett [aut] (), Andy Teucher [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Malcolm Barrett [aut] (ORCID: ), Andy Teucher [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "utf8": { "Package": "utf8", - "Version": "1.2.5", + "Version": "1.2.6", "Source": "Repository", "Title": "Unicode Text Processing", - "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\"), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))", + "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))", "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.", "License": "Apache License (== 2.0) | file LICENSE", - "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8", - "BugReports": "https://github.com/patperry/r-utf8/issues", + "URL": "https://krlmlr.github.io/utf8/, https://github.com/krlmlr/utf8", + "BugReports": "https://github.com/krlmlr/utf8/issues", "Depends": [ "R (>= 2.10)" ], @@ -5657,13 +5798,13 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)", + "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database)", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "vctrs": { "Package": "vctrs", - "Version": "0.6.5", + "Version": "0.7.3", "Source": "Repository", "Title": "Vector Helpers", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -5672,13 +5813,13 @@ "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs", "BugReports": "https://github.com/r-lib/vctrs/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.0.0)" ], "Imports": [ "cli (>= 3.4.0)", "glue", "lifecycle (>= 1.0.3)", - "rlang (>= 1.1.0)" + "rlang (>= 1.1.7)" ], "Suggests": [ "bit64", @@ -5698,11 +5839,14 @@ "zeallot" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", "Encoding": "UTF-8", + "KeepSource": "true", "Language": "en-GB", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", @@ -5710,11 +5854,11 @@ }, "viridisLite": { "Package": "viridisLite", - "Version": "0.4.2", + "Version": "0.4.3", "Source": "Repository", "Type": "Package", "Title": "Colorblind-Friendly Color Maps (Lite Version)", - "Date": "2023-05-02", + "Date": "2026-02-03", "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", "Maintainer": "Simon Garnier ", "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", @@ -5731,23 +5875,23 @@ ], "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", "Repository": "CRAN" }, "vroom": { "Package": "vroom", - "Version": "1.6.5", + "Version": "1.7.1", "Source": "Repository", "Title": "Read and Write Rectangular Text Data Quickly", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read. The writer formats the data in parallel and writes to disk asynchronously from formatting.", "License": "MIT + file LICENSE", - "URL": "https://vroom.r-lib.org, https://github.com/tidyverse/vroom", + "URL": "https://vroom.tidyverse.org, https://github.com/tidyverse/vroom", "BugReports": "https://github.com/tidyverse/vroom/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "bit64", @@ -5757,7 +5901,7 @@ "hms", "lifecycle (>= 1.0.3)", "methods", - "rlang (>= 0.4.2)", + "rlang (>= 1.1.0)", "stats", "tibble (>= 2.0.0)", "tidyselect", @@ -5790,25 +5934,27 @@ ], "LinkingTo": [ "cpp11 (>= 0.2.0)", - "progress (>= 1.2.1)", + "progress (>= 1.2.3)", "tzdb (>= 0.1.1)" ], "VignetteBuilder": "knitr", "Config/Needs/website": "nycflights13, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "false", + "Config/usethis/last-upkeep": "2025-11-25", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3.9000", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Hadley Wickham [aut] (), Jennifer Bryan [aut, cre] (), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "waldo": { "Package": "waldo", - "Version": "0.6.1", + "Version": "0.6.2", "Source": "Repository", "Title": "Find Differences Between R Objects", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -5930,7 +6076,7 @@ }, "xfun": { "Package": "xfun", - "Version": "0.52", + "Version": "0.57", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -5952,7 +6098,7 @@ "rstudioapi", "tinytex (>= 0.30)", "mime", - "litedown (>= 0.4)", + "litedown (>= 0.6)", "commonmark", "knitr (>= 1.50)", "remotes", @@ -5962,22 +6108,23 @@ "jsonlite", "magick", "yaml", - "qs" + "data.table", + "qs2" ], "License": "MIT + file LICENSE", "URL": "https://github.com/yihui/xfun", "BugReports": "https://github.com/yihui/xfun/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "litedown", "NeedsCompilation": "yes", - "Author": "Yihui Xie [aut, cre, cph] (, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (), Christophe Dervieux [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "xml2": { "Package": "xml2", - "Version": "1.3.8", + "Version": "1.5.2", "Source": "Repository", "Title": "Parse XML", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", @@ -5998,7 +6145,6 @@ "curl", "httr", "knitr", - "magrittr", "mockery", "rmarkdown", "testthat (>= 3.2.0)", @@ -6007,7 +6153,7 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", "Config/testthat/edition": "3", @@ -6072,21 +6218,23 @@ }, "xtable": { "Package": "xtable", - "Version": "1.8-4", + "Version": "1.8-8", "Source": "Repository", - "Date": "2019-04-08", + "Date": "2026-02-20", "Title": "Export Tables to LaTeX or HTML", "Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))", "Maintainer": "David Scott ", "Imports": [ "stats", - "utils" + "utils", + "methods" ], "Suggests": [ "knitr", - "plm", "zoo", - "survival" + "survival", + "glue", + "tinytex" ], "VignetteBuilder": "knitr", "Description": "Coerce data to LaTeX and HTML tables.", @@ -6101,26 +6249,33 @@ }, "yaml": { "Package": "yaml", - "Version": "2.3.10", + "Version": "2.3.12", "Source": "Repository", "Type": "Package", "Title": "Methods to Convert R Data to YAML and Back", - "Date": "2024-07-22", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"cre\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Shawn\", \"Garbett\", , \"shawn.garbett@vumc.org\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4079-5621\")), person(\"Jeremy\", \"Stephens\", role = c(\"aut\", \"ctb\")), person(\"Kirill\", \"Simonov\", role = \"aut\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"reikoch\", role = \"ctb\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5613-5006\")), person(\"Brendan\", \"O'Connor\", role = \"ctb\"), person(\"Michael\", \"Quinn\", role = \"ctb\"), person(\"Charlie\", \"Gao\", role = \"ctb\"), person(c(\"Gregory\", \"R.\"), \"Warnes\", role = \"ctb\"), person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = \"ctb\") )", + "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://yaml.r-lib.org, https://github.com/r-lib/yaml/", + "BugReports": "https://github.com/r-lib/yaml/issues", "Suggests": [ - "RUnit" + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" ], - "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]", - "Maintainer": "Shawn Garbett ", - "License": "BSD_3_clause + file LICENSE", - "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", - "URL": "https://github.com/vubiostat/r-yaml/", - "BugReports": "https://github.com/vubiostat/r-yaml/issues", + "Config/testthat/edition": "3", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", "NeedsCompilation": "yes", + "Author": "Hadley Wickham [cre] (ORCID: ), Shawn Garbett [ctb] (ORCID: ), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: ), Zhuoer Dong [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: ), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]", + "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "ymlthis": { "Package": "ymlthis", - "Version": "0.1.7", + "Version": "1.0.0", "Source": "Repository", "Title": "Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More", "Authors@R": "c( person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", @@ -6165,9 +6320,9 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.0", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Malcolm Barrett [aut, cre] (), Richard Iannone [aut] (), RStudio [cph, fnd]", + "Author": "Malcolm Barrett [aut, cre] (ORCID: ), Richard Iannone [aut] (ORCID: ), RStudio [cph, fnd]", "Maintainer": "Malcolm Barrett ", "Repository": "CRAN" }, From c69cddce0593b9fc5a33eb90ade0ac63aa4329e3 Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Wed, 6 May 2026 17:42:52 +0200 Subject: [PATCH 4/9] update pandoc (3.4 -> 3.8.3) --- Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 26fb085c..a1feec9c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -26,9 +26,9 @@ RUN apt-get update \ && rm -rf /var/lib/apt/lists/* ## Install pandoc -RUN wget https://github.com/jgm/pandoc/releases/download/3.4/pandoc-3.4-1-amd64.deb \ - && dpkg -i pandoc-3.4-1-amd64.deb \ - && rm pandoc-3.4-1-amd64.deb +RUN wget https://github.com/jgm/pandoc/releases/download/3.8.3/pandoc-3.8.3-1-amd64.deb \ + && dpkg -i pandoc-3.8.3-1-amd64.deb \ + && rm pandoc-3.8.3-1-amd64.deb ## Copy R profile COPY docker/Rprofile.site $R_HOME/etc/Rprofile.site From 207c80dfe927fd18e5782ac4f58fc5a05e0b6a88 Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Wed, 6 May 2026 22:15:22 +0200 Subject: [PATCH 5/9] add 'returning to protocolsource' section --- CONTRIBUTING.md | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 3ced6075..3f2707cd 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -10,6 +10,31 @@ editor_options: Thank you for considering to contribute to this repository! +## Returning to protocolsource? + +Skip this section if you haven't contributed to the protocolsource repository before. + +If it's been sometime since you contributed to the protocolsource repository, here are some helpful tips to get you started again. + +First, locate your local copy (a _clone_ in GitHub parlance) of the repository on your laptop and open the Rstudio project by opening the `protocolsource.Rproj` file. +It's likely that you need to update to things: (i) `git`, and (ii) the `renv` package management. + +To check if your local `git` _clone_ is aligned with [protocolsource repository](https://github.com/inbo/protocolsource/), run the following `git` commands in the `Terminal` pane: + +- Situation 1: you continue working on a protocol branch, but it has been some time: + - make sure you are in your local branch `git checkout ` + - then run, `git pull origin main` (this will merge changes that were done in the remote `main` branch that you did not yet have locally into your `` branch) + +- Situation 2: you want to start working on a new protocol or update an existing protocol: + - `git checkout main` (this will switch to the `main` branch) + - `git pull` (this will fetch work done on the remote `main` branch that is not yet in your local `main` branch and include it in your local `main` branch) + +After this is done: restart R (CTRL+SHIFT+F10). +Then, check `renv`, run `renv::status()` in the `Console` pane. +If this tells you `No issues found -- the project is in a consistent state.`, you are good to go. +If not, you will need to follow the instructions and update the packages: run `renv::restore()`. +When this succeeded, you can proceed the [workflow](#workflow) section for further guidance. + ## Setup your local repository Are you a first-time GitHub user? From 4676cf14eb2bc8931033eec448046cc508453f3f Mon Sep 17 00:00:00 2001 From: hansvancalster Date: Thu, 7 May 2026 07:43:03 +0200 Subject: [PATCH 6/9] textual improvements --- CONTRIBUTING.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 3f2707cd..9006130b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -17,12 +17,12 @@ Skip this section if you haven't contributed to the protocolsource repository be If it's been sometime since you contributed to the protocolsource repository, here are some helpful tips to get you started again. First, locate your local copy (a _clone_ in GitHub parlance) of the repository on your laptop and open the Rstudio project by opening the `protocolsource.Rproj` file. -It's likely that you need to update to things: (i) `git`, and (ii) the `renv` package management. +It's likely that you need to update two things: (i) `git`, and (ii) the `renv` package management. To check if your local `git` _clone_ is aligned with [protocolsource repository](https://github.com/inbo/protocolsource/), run the following `git` commands in the `Terminal` pane: - Situation 1: you continue working on a protocol branch, but it has been some time: - - make sure you are in your local branch `git checkout ` + - make sure you are in your local branch `git checkout ` (replace `` by your protocolcode, e.g. `sfp-456-nl`). - then run, `git pull origin main` (this will merge changes that were done in the remote `main` branch that you did not yet have locally into your `` branch) - Situation 2: you want to start working on a new protocol or update an existing protocol: @@ -30,10 +30,10 @@ To check if your local `git` _clone_ is aligned with [protocolsource repository] - `git pull` (this will fetch work done on the remote `main` branch that is not yet in your local `main` branch and include it in your local `main` branch) After this is done: restart R (CTRL+SHIFT+F10). -Then, check `renv`, run `renv::status()` in the `Console` pane. +Then, check the `renv` status by running `renv::status()` in the `Console` pane. If this tells you `No issues found -- the project is in a consistent state.`, you are good to go. If not, you will need to follow the instructions and update the packages: run `renv::restore()`. -When this succeeded, you can proceed the [workflow](#workflow) section for further guidance. +When this succeeded, you can proceed to the [workflow](#workflow) section for further guidance. ## Setup your local repository From ea5f63fc52b61472bc9a375c3de5f780d8e1f418 Mon Sep 17 00:00:00 2001 From: Hans Van Calster Date: Thu, 7 May 2026 10:14:37 +0200 Subject: [PATCH 7/9] Update CONTRIBUTING.md Co-authored-by: Els Lommelen --- CONTRIBUTING.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 9006130b..46467a56 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -21,7 +21,7 @@ It's likely that you need to update two things: (i) `git`, and (ii) the `renv` To check if your local `git` _clone_ is aligned with [protocolsource repository](https://github.com/inbo/protocolsource/), run the following `git` commands in the `Terminal` pane: -- Situation 1: you continue working on a protocol branch, but it has been some time: +- Situation 1: you continue working on the same protocol branch, but it has been some time: - make sure you are in your local branch `git checkout ` (replace `` by your protocolcode, e.g. `sfp-456-nl`). - then run, `git pull origin main` (this will merge changes that were done in the remote `main` branch that you did not yet have locally into your `` branch) From 022f35682fbff1712b94b435e54ccc0370ab5328 Mon Sep 17 00:00:00 2001 From: Hans Van Calster Date: Thu, 7 May 2026 10:15:10 +0200 Subject: [PATCH 8/9] Update CONTRIBUTING.md Co-authored-by: Els Lommelen --- CONTRIBUTING.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 46467a56..be33548e 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -24,6 +24,7 @@ To check if your local `git` _clone_ is aligned with [protocolsource repository] - Situation 1: you continue working on the same protocol branch, but it has been some time: - make sure you are in your local branch `git checkout ` (replace `` by your protocolcode, e.g. `sfp-456-nl`). - then run, `git pull origin main` (this will merge changes that were done in the remote `main` branch that you did not yet have locally into your `` branch) + - after updating `renv` (see below), you can continue working on your protocol - Situation 2: you want to start working on a new protocol or update an existing protocol: - `git checkout main` (this will switch to the `main` branch) From ae8bee292b6e4a1f0f5ad43c378782f6f012a9a8 Mon Sep 17 00:00:00 2001 From: Hans Van Calster Date: Thu, 7 May 2026 10:15:31 +0200 Subject: [PATCH 9/9] Update CONTRIBUTING.md Co-authored-by: Els Lommelen --- CONTRIBUTING.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index be33548e..6f990195 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -29,6 +29,7 @@ To check if your local `git` _clone_ is aligned with [protocolsource repository] - Situation 2: you want to start working on a new protocol or update an existing protocol: - `git checkout main` (this will switch to the `main` branch) - `git pull` (this will fetch work done on the remote `main` branch that is not yet in your local `main` branch and include it in your local `main` branch) + - after updating `renv` (see below), you can make or update a protocol following the instructions After this is done: restart R (CTRL+SHIFT+F10). Then, check the `renv` status by running `renv::status()` in the `Console` pane.