diff --git a/plugins/bigquery/pyproject.toml b/plugins/bigquery/pyproject.toml index 0afd0a390..ccd5d2920 100644 --- a/plugins/bigquery/pyproject.toml +++ b/plugins/bigquery/pyproject.toml @@ -9,6 +9,8 @@ dependencies = [ "flyte[connector]", "google-cloud-bigquery", "google-cloud-bigquery-storage", + "pandas", + "pyarrow", ] [dependency-groups] diff --git a/plugins/bigquery/src/flyteplugins/bigquery/__init__.py b/plugins/bigquery/src/flyteplugins/bigquery/__init__.py index 3bd6d798a..e3886523f 100644 --- a/plugins/bigquery/src/flyteplugins/bigquery/__init__.py +++ b/plugins/bigquery/src/flyteplugins/bigquery/__init__.py @@ -37,7 +37,12 @@ def run_query(date: str) -> DataFrame[dict]: ``` """ +from flyte.io.extend import DataFrameTransformerEngine + from flyteplugins.bigquery.connector import BigQueryConnector +from flyteplugins.bigquery.dataframe import BQToPandasDecodingHandler from flyteplugins.bigquery.task import BigQueryConfig, BigQueryTask -__all__ = ["BigQueryConfig", "BigQueryConnector", "BigQueryTask"] +DataFrameTransformerEngine.register(BQToPandasDecodingHandler()) + +__all__ = ["BQToPandasDecodingHandler", "BigQueryConfig", "BigQueryConnector", "BigQueryTask"] diff --git a/plugins/bigquery/src/flyteplugins/bigquery/dataframe.py b/plugins/bigquery/src/flyteplugins/bigquery/dataframe.py new file mode 100644 index 000000000..dce92883a --- /dev/null +++ b/plugins/bigquery/src/flyteplugins/bigquery/dataframe.py @@ -0,0 +1,79 @@ +import typing + +from flyte.io.extend import DataFrameDecoder +from flyteidl2.core import literals_pb2 +from google.cloud import bigquery_storage +from google.cloud.bigquery_storage_v1 import types + +if typing.TYPE_CHECKING: + import pandas as pd + import pyarrow as pa +else: + from flyte._utils import lazy_module + + pd = lazy_module("pandas") + pa = lazy_module("pyarrow") + +BIGQUERY = "bq" + + +def _parse_bigquery_uri(uri: str) -> tuple[str, str, str]: + """Parse bq://:. into its components.""" + if not uri.startswith("bq://"): + raise ValueError(f"Invalid BigQuery URI {uri!r}. Expected bq://:.
.") + + try: + project_id, table_path = uri.removeprefix("bq://").split(":", 1) + dataset_id, table_id = table_path.split(".", 1) + except ValueError as exc: + raise ValueError(f"Invalid BigQuery URI {uri!r}. Expected bq://:.
.") from exc + + if not project_id or not dataset_id or not table_id: + raise ValueError(f"Invalid BigQuery URI {uri!r}. Expected bq://:.
.") + + return project_id, dataset_id, table_id + + +def _read_from_bq( + flyte_value: literals_pb2.StructuredDataset, + current_task_metadata: literals_pb2.StructuredDatasetMetadata, +) -> "pd.DataFrame": + project_id, dataset_id, table_id = _parse_bigquery_uri(flyte_value.uri) + + read_options = None + structured_dataset_type = current_task_metadata.structured_dataset_type + if structured_dataset_type and structured_dataset_type.columns: + read_options = types.ReadSession.TableReadOptions( + selected_fields=[column.name for column in structured_dataset_type.columns] + ) + + table = f"projects/{project_id}/datasets/{dataset_id}/tables/{table_id}" + read_session = types.ReadSession( + table=table, + data_format=types.DataFormat.ARROW, + read_options=read_options, + ) + client = bigquery_storage.BigQueryReadClient() + session = client.create_read_session( + parent=f"projects/{project_id}", + read_session=read_session, + ) + + frames = [page.to_dataframe() for stream in session.streams for page in client.read_rows(stream.name).rows().pages] + if frames: + return pd.concat(frames) + + schema = pa.ipc.read_schema(pa.py_buffer(session.arrow_schema.serialized_schema)) + return schema.empty_table().to_pandas() + + +class BQToPandasDecodingHandler(DataFrameDecoder): + def __init__(self): + super().__init__(pd.DataFrame, BIGQUERY, "") + + async def decode( + self, + flyte_value: literals_pb2.StructuredDataset, + current_task_metadata: literals_pb2.StructuredDatasetMetadata, + ) -> "pd.DataFrame": + return _read_from_bq(flyte_value, current_task_metadata) diff --git a/plugins/bigquery/tests/test_dataframe.py b/plugins/bigquery/tests/test_dataframe.py new file mode 100644 index 000000000..6d29dcca7 --- /dev/null +++ b/plugins/bigquery/tests/test_dataframe.py @@ -0,0 +1,87 @@ +from unittest.mock import MagicMock, patch + +import pandas as pd +import pyarrow as pa +import pytest +from flyte.io.extend import DataFrameTransformerEngine +from flyteidl2.core import literals_pb2, types_pb2 + +from flyteplugins.bigquery.dataframe import ( + BQToPandasDecodingHandler, + _parse_bigquery_uri, + _read_from_bq, +) + + +def _structured_dataset(uri: str = "bq://test-project:test_dataset.test_table"): + return literals_pb2.StructuredDataset(uri=uri) + + +def _metadata(*column_names: str): + return literals_pb2.StructuredDatasetMetadata( + structured_dataset_type=types_pb2.StructuredDatasetType( + columns=[types_pb2.StructuredDatasetType.DatasetColumn(name=name) for name in column_names] + ) + ) + + +def test_bigquery_decoder_is_registered(): + decoder = DataFrameTransformerEngine.get_decoder(pd.DataFrame, "bq", "") + assert isinstance(decoder, BQToPandasDecodingHandler) + + +@pytest.mark.parametrize( + ("uri", "expected"), + [ + ("bq://project:dataset.table", ("project", "dataset", "table")), + ("bq://my-project:my_dataset.table$20260101", ("my-project", "my_dataset", "table$20260101")), + ], +) +def test_parse_bigquery_uri(uri, expected): + assert _parse_bigquery_uri(uri) == expected + + +@pytest.mark.parametrize("uri", ["gs://bucket/file", "bq://project", "bq://:dataset.table", "bq://project:.table"]) +def test_parse_bigquery_uri_rejects_invalid_uri(uri): + with pytest.raises(ValueError, match="Expected bq://"): + _parse_bigquery_uri(uri) + + +def test_read_from_bq(): + first = pd.DataFrame({"name": ["Alice"], "age": [25]}) + second = pd.DataFrame({"name": ["Bob"], "age": [30]}) + pages = [MagicMock(), MagicMock()] + pages[0].to_dataframe.return_value = first + pages[1].to_dataframe.return_value = second + + session = MagicMock() + session.streams = [MagicMock(name="stream-one")] + reader = MagicMock() + reader.rows.return_value.pages = pages + + with patch("flyteplugins.bigquery.dataframe.bigquery_storage.BigQueryReadClient") as client_cls: + client = client_cls.return_value + client.create_read_session.return_value = session + client.read_rows.return_value = reader + + result = _read_from_bq(_structured_dataset(), _metadata("name")) + + pd.testing.assert_frame_equal(result.reset_index(drop=True), pd.concat([first, second], ignore_index=True)) + request = client.create_read_session.call_args.kwargs + assert request["parent"] == "projects/test-project" + assert request["read_session"].table == "projects/test-project/datasets/test_dataset/tables/test_table" + assert list(request["read_session"].read_options.selected_fields) == ["name"] + + +def test_read_from_empty_bq_table(): + schema = pa.schema([("name", pa.string()), ("age", pa.int64())]) + session = MagicMock() + session.streams = [] + session.arrow_schema.serialized_schema = schema.serialize().to_pybytes() + + with patch("flyteplugins.bigquery.dataframe.bigquery_storage.BigQueryReadClient") as client_cls: + client_cls.return_value.create_read_session.return_value = session + result = _read_from_bq(_structured_dataset(), _metadata()) + + assert result.empty + assert list(result.columns) == ["name", "age"] diff --git a/plugins/bigquery/uv.lock b/plugins/bigquery/uv.lock index 8eae7023e..31eb19cb4 100644 --- a/plugins/bigquery/uv.lock +++ b/plugins/bigquery/uv.lock @@ -2,11 +2,21 @@ version = 1 revision = 3 requires-python = ">=3.10" resolution-markers = [ - "python_full_version >= '3.15'", - "python_full_version == '3.14.*'", - "python_full_version == '3.13.*'", - "python_full_version == '3.12.*'", - "python_full_version == '3.11.*'", + "python_full_version >= '3.15' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.11.*' and sys_platform == 'win32'", + "python_full_version == '3.11.*' and sys_platform == 'emscripten'", + "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11'", ] @@ -405,7 +415,7 @@ name = "exceptiongroup" version = "1.3.1" source = { registry = "https://pypi.org/simple" } dependencies = [ - { name = "typing-extensions" }, + { name = "typing-extensions", marker = "python_full_version < '3.11'" }, ] sdist = { url = "https://files.pythonhosted.org/packages/50/79/66800aadf48771f6b62f7eb014e352e5d06856655206165d775e675a02c9/exceptiongroup-1.3.1.tar.gz", hash = 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