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refactor: restructure diagram module and add Sphinx directive #689

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Job	Run time
build (3.14)	1m 22s
build (3.10)	1m 58s
build (3.13)	2m 6s
build (3.12)	1m 53s
build (3.9)	2m 11s
build (3.11)	1m 54s
	11m 24s