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CITATION.cff

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# This CITATION.cff file was generated with cffinit.
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# Visit https://bit.ly/cffinit to generate yours today!
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cff-version: 1.2.0
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title: >-
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Epiverse-TRACE Tutorials Late: Scenario modelling for
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outbreak analytics with R
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message: >-
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Please cite this lesson using the information in this file
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when you refer to it in publications, and/or if you
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re-use, adapt, or expand on the content in your own
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training material.
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type: dataset
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authors:
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- given-names: Amanda
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family-names: Minter
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email: amandalminter@gmail.com
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orcid: 'https://orcid.org/0000-0003-1171-5688'
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- given-names: Abdoelnaser
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family-names: Degoot
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email: abdoelnaser-mahmood.degoot@lshtm.ac.uk
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orcid: 'https://orcid.org/0000-0001-8788-2496'
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repository-code: 'https://github.com/epiverse-trace/tutorials-late'
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url: 'https://epiverse-trace.github.io/tutorials-late/'
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abstract: >-
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The Epiverse-TRACE initiative aims to provide a software
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ecosystem for outbreak analytics with integrated,
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generalisable and scalable community-driven software. We
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support the development of R packages, make the existing
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ones interoperable for the user experience, and stimulate
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a community of practice. In the outbreak analytics
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curriculum, we built three tutorials around an outbreak
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analysis pipeline split into three stages: Early, Middle,
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and Late tasks. Early tasks include reading, cleaning and
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validating case data, and converting line list data to
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incidence for visualizing epidemic curves. Middle tasks
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host real-time analysis that includes accessing
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epidemiological delays, estimating transmission metrics,
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forecasting, and severity from incidence data,
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superspreading from line list and contact data, and
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simulating transmission chains. Late tasks include
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accessing and analyzing social contact matrices, scenario
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modelling to simulate disease spread and investigate
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interventions, and modelling disease burden.
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keywords:
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- outbreak-analytics
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- scenario-modelling
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- contact-matrix
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- non-pharmaceutical-interventions
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- vaccination
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- disease-burden
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- carpentries-workbench
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- rstats
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- english-language
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license: CC-BY-4.0
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version: v2025-03-11
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date-released: '2025-03-11'

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