Issues

• Inferring pseudobulk batch effects

  const-ae/lemur#31 · Filter by author rached-97 opened on Jun 20, 2026

• lemur::align_harmony causes an error with recent versions of harmony

  const-ae/lemur#29 · Filter by author wolfganghuber opened on May 14, 2026

• analysis within subset of cells

  const-ae/lemur#25 · Filter by author Shubhra-B opened on Nov 20, 2025

• Multi-conditions and multi-batches

  const-ae/lemur#23 · Filter by author xye1813 opened on May 28, 2025
  6

• Opposite signs in lfc and did_lfc from find_de_neighborhood

  const-ae/lemur#22 · Filter by author chibatoshikaze opened on Apr 18, 2025
  1

• lemur function force conversion to dense matrix

  const-ae/lemur#19 · Filter by author edg1983 opened on Nov 27, 2024
  8

• Differential State analysis?

  const-ae/lemur#15 · Filter by author castro019 opened on Apr 22, 2024
  1

• Error in fit$ridge_penalty

  const-ae/lemur#14 · Filter by author BiotechPedro opened on Apr 4, 2024

• Cell cycle regression and n_embedding tuning

  const-ae/lemur#11 · Filter by author BiotechPedro opened on Jan 11, 2024
  1

• Expectations for UMAP of embeddings

  const-ae/lemur#10 · Filter by author Thapeachydude opened on Dec 4, 2023
  2

• collinearity error with control vs treatment test for multiple subjects

  const-ae/lemur#9 · Filter by author shobhitagrawal1 opened on Oct 15, 2023
  4

• >2 conditions

  const-ae/lemur#4 · Filter by author lucafusarbassini opened on Apr 18, 2023
  9

• installation error

  const-ae/lemur#1 · Filter by author TahneeMa opened on Mar 9, 2023
  3