Collaborative-RStudio-GitHub/.github/workflows/publish.yaml at main · clockhm/Collaborative-RStudio-GitHub · GitHub

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on:
  workflow_dispatch:
  schedule:
    - cron: "0 23 * * 0"
  push:
    branches: [main]

name: Render Quarto Site

jobs:
  quarto-publish:
    runs-on: ubuntu-latest
    permissions:
      contents: write
    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          tinytex: true

      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt install -y \
            libcurl4-openssl-dev \
            libfontconfig1-dev \
            libssl-dev \
            libxml2-dev \
            libpng-dev \
            libjpeg-dev \
            libtiff-dev \
            libcairo2-dev \
            libxt-dev \
            libfreetype6-dev \
            libharfbuzz-dev \
            libfribidi-dev \
            zlib1g-dev \
            libv8-dev \
            libglpk-dev \
            librsvg2-bin

      - name: Install R with renv
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: renv
        if: ${{ hashFiles('renv.lock') != '' }}

      - name: Install R Dependencies with renv
        uses: r-lib/actions/setup-renv@v2
        with:
          cache-version: 1
        if: ${{ hashFiles('renv.lock') != '' }}

      - name: Install R latest
        uses: r-lib/actions/setup-r@v2
        if: ${{ hashFiles('renv.lock') == '' }}

      - name: Set R library path (no lockfile)
        run: echo "R_LIBS_USER=$HOME/.local/lib/R/site-library" >> "$GITHUB_ENV"
        if: ${{ hashFiles('renv.lock') == '' }}

      - name: Cache R library (no lockfile)
        uses: actions/cache@v4
        with:
          path: ~/.local/lib/R/site-library
          key: ${{ runner.os }}-r-nolock-${{ hashFiles('**/*.R', '**/*.Rmd', '**/*.qmd', '_quarto.yml') }}
          restore-keys: |
            ${{ runner.os }}-r-nolock-
        if: ${{ hashFiles('renv.lock') == '' }}

      - name: Install R latest dependencies
        run: |
          lib <- Sys.getenv("R_LIBS_USER")
          if (nzchar(lib)) {
            dir.create(lib, recursive = TRUE, showWarnings = FALSE)
            .libPaths(c(lib, .libPaths()))
          }
          install.packages("renv")
          install.packages("rmarkdown")
          install.packages("yaml")
          deps <- unique(stats::na.omit(renv::dependencies()$Package))
          if (length(deps) > 0) install.packages(deps)
        shell: Rscript {0}
        if: ${{ hashFiles('renv.lock') == '' }}

      - name: Ensure Quarto R runtime packages
        run: |
          lib <- Sys.getenv("R_LIBS_USER")
          if (nzchar(lib)) {
            dir.create(lib, recursive = TRUE, showWarnings = FALSE)
            .libPaths(c(lib, .libPaths()))
          }
          pkgs <- c("knitr", "rmarkdown")
          missing <- pkgs[!vapply(pkgs, requireNamespace, logical(1), quietly = TRUE)]
          if (length(missing) > 0) install.packages(missing)
        shell: Rscript {0}

      - name: Render and Publish
        uses: quarto-dev/quarto-actions/publish@v2
        with:
          target: gh-pages
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}