(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image ./misc/atlas_lung_mask.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Process Process-1:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-2:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-5:
Process Process-4:
Process Process-7:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
Process Process-3:
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
Process Process-15:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-13:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-16:
Process Process-11:
Process Process-14:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-12:
Process Process-10:
Process Process-8:
Process Process-6:
Process Process-9:
Traceback (most recent call last):
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
NameError: name 'input_csv' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/COPD_Atlas_INSP_BSpline_Iso1mm.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Process Process-4:
Process Process-2:
Process Process-3:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-6:
Process Process-9:
Traceback (most recent call last):
Process Process-13:
Process Process-8:
Process Process-1:
Process Process-10:
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
Process Process-11:
Process Process-14:
Process Process-12:
Process Process-15:
Process Process-5:
NameError: name 'input_csv' is not defined
Process Process-7:
Process Process-16:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
Traceback (most recent call last):
Traceback (most recent call last):
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/ContenTraceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
ts/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/NameError: name 'input_csv' is not defined
Traceback (most recent call last):
python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
NameError: name 'input_csv' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/COPD_Atlas_INSP_BSpline_Iso1mm.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 245, in <module>
main(sys.argv[1:])
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 225, in main
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/COPD_Atlas_INSP_BSpline_Iso1mm.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 245, in <module>
main(sys.argv[1:])
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 225, in main
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/COPD_Atlas_INSP_BSpline_Iso1mm.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Process Process-1:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
Process Process-6:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
Process Process-11:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/pytProcess Process-2:
hon3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-7:
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
Process Process-4:
Process Process-15:
Process Process-3:
Process Process-5:
Process Process-8:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-9:
Traceback (most recent call last):
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
NameError: name 'input_csv_path' is not defined
Process Process-14:
Process Process-12:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.pyProcess Process-16:
Traceback (most recent call last):
Process Process-13:
Traceback (most recent call last):
Traceback (most recent call last):
Process Process-10:
", line 132, in run
df = pd.read_csv(input_csv_path)
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
NameError: name 'input_csv_path' is not defined
NameError: name 'input_csv_path' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
NameError: name 'input_csv_path' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv_path)
NameError: name 'input_csv_path' is not defined
NameError: name 'input_csv_path' is not defined
NameError: name 'input_csv_path' is not defined
(r-reticulate) (base) zhangzhhengsMBP:Context_Aware_SSL zhangzhongheng$ python /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py --atlas_image /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/COPD_Atlas_INSP_BSpline_Iso1mm.nii.gz --atlas_patch_loc /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/patch_data_32_6_reg/COPD_Atlas_INSP_BSpline_Iso1mm_patch_loc.npy --lowerThreshold -1024 --upperThreshold 240 --input_csv /Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/dataset.csv --output_dir ./results/processed_patch --patch_size 32 --step_size 26
Process Process-1:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-5:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-4:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multProcess Process-10:
iprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-8:
Process Process-3:
Process Process-6:
Process Process-7:
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Process Process-13:
Process Process-2:
Process Process-12:
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
Traceback (most recent call last):
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Devel File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
oper/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Process Process-11:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
Process Process-15:
Process Process-9:
Traceback (most recent call last):
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
NameError: name 'input_csv' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
Process Process-14:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
Process Process-16:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/NameError: name 'input_csv' is not defined
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
Traceback (most recent call last):
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
Traceback (most recent call last):
NameError: name 'input_csv' is not defined
Traceback (most recent call last):
Traceback (most recent call last):
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(* File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
NameError: name 'input_csv' is not defined
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/Users/zhangzhongheng/Documents/2022/ARDS_CT_radiomics/Context_Aware_SSL/src/preprocess/4_patchify_images.py", line 132, in run
df = pd.read_csv(input_csv)
NameError: name 'input_csv' is not defined
Any hints for the following error reporting?