Issues

• jaxlib.xla_extension.XlaRuntimeError

  Zuricho/ParallelFold#50 · Filter by author Xiaojun928 opened on Nov 21, 2024

• Wrong mgnify db name

  Zuricho/ParallelFold#49 · Filter by author WishIWasBornInTheCreteaceousEra opened on Sep 3, 2024
  1

• How to perform parallel search when generating MSA in the CPU section？

  Zuricho/ParallelFold#48 · Filter by author Kangfengyuuuu opened on Jul 17, 2024

• simtk.openmm.OpenMMException: Particle coordinate is nan

  Zuricho/ParallelFold#47 · Filter by author Kangfengyuuuu opened on Jun 20, 2024
  1

• How to run ParaFold in the CPU mode on a machine with GPU.

  Zuricho/ParallelFold#45 · Filter by author Tiramisu023 opened on Apr 18, 2024

• kalign glitch

  Zuricho/ParallelFold#44 · Filter by author erdaqorri opened on Feb 3, 2024

• Why not recommend install by docker?

  Zuricho/ParallelFold#43 · Filter by author Autumn-Roy opened on Jan 22, 2024
  1

• hhalignment.cpp:3539: MergeMasterSlave

  Zuricho/ParallelFold#42 · Filter by author Licko0909 opened on Sep 18, 2023
  1

• known good nvidia driver?

  Zuricho/ParallelFold#41 · Filter by author rocketman8080 opened on Sep 3, 2023

• The GPU step is requiring large amounts of CPU VMEM

  Zuricho/ParallelFold#40 · Filter by author johnire80 opened on Sep 1, 2023

• Run on GPU Error

  Zuricho/ParallelFold#39 · Filter by author erdaqorri opened on Aug 22, 2023
  3

• Multimer prediction error: "ValueError: Unable to retrieve parameter 'scale' for module......."

  Zuricho/ParallelFold#38 · Filter by author tclin422 opened on Aug 3, 2023
  5

• Distributed database usage

  Zuricho/ParallelFold#35 · Filter by author juankaamez opened on Apr 14, 2023

• Has CPU acceleration (the parallelization of the 3 library lookup) been implemented in this repo yet?

  Zuricho/ParallelFold#34 · Filter by author cmkstien opened on Mar 22, 2023
  1

• pdb_seqres_database_path must not be set when running with "--model_preset=monomer_casp14".

  Zuricho/ParallelFold#33 · Filter by author mbassalbioinformatics opened on Mar 18, 2023

• About the test datasets

  Zuricho/ParallelFold#32 · Filter by author xihongshilamu opened on Mar 18, 2023
  2

• Where is the run_figure.py file?

  Zuricho/ParallelFold#29 · Filter by author beaulian opened on Mar 2, 2023
  1

• Parafold run failing since pulling latest changes

  Zuricho/ParallelFold#27 · Filter by author gauravdiwan89 opened on Feb 28, 2023
  8

• Is CPU acceleration failed?

  Zuricho/ParallelFold#26 · Filter by author yanchenmochen opened on Aug 25, 2022
  3

• Could not find HHsearch database

  Zuricho/ParallelFold#24 · Filter by author YiningWang2 opened on Aug 23, 2022
  1

• failed to alloc 2147483648 bytes on host: CUDA_ERROR_OPERATING_SYSTEM: OS call failed or operation not supported on this OS

  Zuricho/ParallelFold#23 · Filter by author yanchenmochen opened on Aug 16, 2022
  3

• Too many command-line arguments

  Zuricho/ParallelFold#22 · Filter by author AnaValero opened on Jun 21, 2022
  1

• Alphafold2 v/s Parafold timings

  Zuricho/ParallelFold#21 · Filter by author adi1bioinfo opened on Apr 29, 2022
  1

• An error in feature generation

  Zuricho/ParallelFold#20 · Filter by author YiningWang2 opened on Mar 7, 2022
  1

• GPU computing is slow

  Zuricho/ParallelFold#19 · Filter by author chenshixinnb opened on Mar 3, 2022
  3