Issues

• add jvm as a parameter not a hardcoded value

  ZSI-Bio/CNV-opt#51 · Filter by author mwiewior opened on Jul 19, 2017

• refactor code to read read_count instead of cov_avg

  ZSI-Bio/CNV-opt#49 · Filter by author mwiewior opened on Jul 19, 2017
  

• Rewrite insert stmt into dbWriteTable

  ZSI-Bio/CNV-opt#48 · Filter by author mwiewior opened on Jul 19, 2017

• check why depends does not work

  bug
  ZSI-Bio/CNV-opt#47 · Filter by author mwiewior opened on Jul 19, 2017
  1

  

• Add jdbc driver(hive,pgsql) to the zsi-bio-base-docker image

  ZSI-Bio/CNV-opt#45 · Filter by author mwiewior opened on Jul 19, 2017
  

• Add an option to either download jdbc driver from url or using a local path

  ZSI-Bio/CNV-opt#44 · Filter by author mwiewior opened on Jul 19, 2017
  

• Document luaching in a Docker container

  ZSI-Bio/CNV-opt#43 · Filter by author mwiewior opened on Jul 19, 2017
  

• add column with number of reads

  ZSI-Bio/CNV-opt#42 · Filter by author mwiewior opened on Jul 19, 2017

• add another id to identify group of chr from a single run (set of parametrs)

  enhancement
  ZSI-Bio/CNV-opt#41 · Filter by author mwiewior opened on Jul 16, 2017
  1

  

• R dbDisconnect does not close the session

  ZSI-Bio/CNV-opt#40 · Filter by author mwiewior opened on Jul 16, 2017
  

• read and write to db

  ZSI-Bio/CNV-opt#28 · Filter by author tgambin opened on Jul 12, 2017
  

• run_cnvcaller - parameters from db

  ZSI-Bio/CNV-opt#27 · Filter by author tgambin opened on Jul 12, 2017
  

• Remove hardcoded package version for R in Jenkinsfile

  ZSI-Bio/CNV-opt#19 · Filter by author mwiewior opened on Jul 9, 2017
  

• Coverage test using CODEX flags configuration

  ZSI-Bio/CNV-opt#13 · Filter by author mwiewior opened on Jul 5, 2017
  

• Resources

  ZSI-Bio/CNV-opt#8 · Filter by author tgambin opened on Jul 5, 2017