Merge branch 'UPPMAX:main' into main

Author: WilmerMillert

.wordlist.txt

@@ -1127,3 +1127,4 @@ pola
 initializations
 numprocesses
 undersubscribed
+StackOverflow

docs/day2/basic_batch_slurm.rst

@@ -1,3 +1,4 @@
+.. _basic-slurm:
 Basic batch and Slurm
 =====================
 

docs/day2/install_packages.rst

@@ -1,5 +1,5 @@
 .. _install-packages:
-Install packages
+Installing packages
 ================
 
 .. objectives::

docs/day2/interactive.rst

@@ -1,3 +1,5 @@
+.. _interactive:
+
 Interactive work on the compute nodes
 =====================================
 

docs/day2/ondemand-desktop.rst

@@ -1,3 +1,5 @@
+.. _ides-ondemand:
+
 Desktop On Demand
 =================
 

docs/day2/use_isolated_environments.rst

@@ -1,7 +1,7 @@
 .. _use-isolated-environments:
 
-Use isolated environments
-=========================
+Using isolated environments
+===========================
 
 .. admonition:: Learning objectives
 

docs/day3/matplotlib/README.md

@@ -79,7 +79,7 @@ Tetralith  |?`module load Python/3.10.4-env-hpc1-gcc-2022a-eb`
 
 :::
 
-## Exercises
+- Create a script with the following code:
 
 ```python
 import matplotlib as mpl
@@ -92,9 +92,11 @@ plt.plot(x, np.cos(x))
 
 # plt.show()
 plt.figure().savefig('my_figure.png') # Unsure if this works
-
 ```
 
+- Run the script
+- Check that the figure is created
+
 ## External links
 
 - [Python Data Science Handbook](https://jakevdp.github.io/PythonDataScienceHandbook/)

docs/day3/seaborn/README.md

@@ -86,44 +86,34 @@ Tetralith  |`module load buildtool-easybuild/4.8.0-hpce082752a2 GCC/13.2.0 Pytho
 
 ## Exercises
 
-```python
-import matplotlib.pyplot as plt
-plt.style.use('classic')
-%matplotlib inline
-import numpy as np
-import seaborn as pd
-
-# Create some data
-rng = np.random.RandomState(0)
-x = np.linspace(0, 10, 500)
-y = np.cumsum(rng.randn(500, 6), 0)
-
-# Plot the data with Matplotlib defaults
-plt.plot(x, y)
-plt.legend('ABCDEF', ncol=2, loc='upper left');
-
+Run the following code, that is copied from
+[the `seaborn` page 'An introduction to `seaborn`'](https://seaborn.pydata.org/tutorial/introduction.html)
+and combined with
+[this StackOverflow post to save it to a file](https://stackoverflow.com/a/39482402/3364162)
 
+```python
+# Import seaborn
 import seaborn as sns
-sns.set()
 
+# Apply the default theme
+sns.set_theme()
 
-# same plotting code as above!
-plt.plot(x, y)
-plt.legend('ABCDEF', ncol=2, loc='upper left');
-```
-
-```python
-data = np.random.multivariate_normal([0, 0], [[5, 2], [2, 2]], size=2000)
-data = pd.DataFrame(data, columns=['x', 'y'])
+# Load an example dataset
+tips = sns.load_dataset("tips")
 
-# Two overlaid density plots
-for col in 'xy':
-    sns.kdeplot(data[col], shade=True)
-
-# Density plot
-sns.kdeplot(data);
+# Create a visualization and save it to file
+my_plot = sns.relplot(
+    data = tips,
+    x = "total_bill", y = "tip", col = "time",
+    hue = "smoker", style = "smoker", size = "size",
+)
+fig = my_plot.get_figure()
+fig.savefig("out.png") 
 ```
 
+- Run the script
+- Check that the figure is created
+
 ## External links
 
 - [Python Data Science Handbook](https://jakevdp.github.io/PythonDataScienceHandbook/)

docs/schedule.rst

@@ -76,23 +76,23 @@ Day 2: Packages, environments and using compute nodes
 +------------+---------------------------------+--------------------------------+
 |11:10-11:30 | :ref:`use-isolated-environments`| Björn                          |
 +------------+---------------------------------+--------------------------------+
-|11:30-12:00 | Basic batch/Slurm               | Birgitte                       |
+|11:30-12:00 | :ref:`basic-slurm`              | Birgitte                       |
 +------------+---------------------------------+--------------------------------+
 |12:00-13:00 | Break                           |.                               |
 +------------+---------------------------------+--------------------------------+
-|13:00-13:20 | Interactive (terminal/onDemand) | Birgitte                       |
+|13:00-13:20 | :ref:`interactive`              | Birgitte                       |
 +------------+---------------------------------+--------------------------------+
 |13:20-13:50 | :ref:`ides-cmd`                 | Bjorn                          |
 +------------+---------------------------------+--------------------------------+
 |13:50-14:05 | Break                           |.                               |
 +------------+---------------------------------+--------------------------------+
-|14:05-14:40 | Starting IDEs from onDemand     | Rebecca                        |
+|14:05-14:40 | :ref:`ides-ondemand`            | Birgitte                       |
 +------------+---------------------------------+--------------------------------+
 |14:40-14:55 | :ref:`use_ides`                 | Jayant                         |
 +------------+---------------------------------+--------------------------------+
 |14:55-15:10 | Break                           |.                               |
 +------------+---------------------------------+--------------------------------+
-|15:10-15:45 | Using IDEs                      | Jayant                         |
+|15:10-15:45 | :ref:`use_ides`                 | Jayant                         |
 +------------+---------------------------------+--------------------------------+
 |15:45-16:00 | :ref:`evaluation_day_2`         | Björn                          |
 +------------+---------------------------------+--------------------------------+