From 210ffa7d1165ad57e9c89a223784ecd83ef82daf Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 12:52:37 -0600 Subject: [PATCH 01/18] have vignette use local version --- vignettes/CreatingNetworks.Rmd | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/vignettes/CreatingNetworks.Rmd b/vignettes/CreatingNetworks.Rmd index ecf3487c..97386dec 100644 --- a/vignettes/CreatingNetworks.Rmd +++ b/vignettes/CreatingNetworks.Rmd @@ -259,7 +259,9 @@ also be downloaded and added to the PPI network. All three external databases have different interfaces for downloading data, so we show how to retrieve data from each of them below. -For this tutorial, we query STRINGdb and GeneMANIA directly. We also provide the option (using the switch local = TRUE) to retrive edges from human PPIs from these sources in pre-assembled files; the [BRCANetworks vignette](BCRANetworks.html) demonstrates how to get the STRING-db and GeneMANIA edges from the static downloaded networks. +For this tutorial, we use the local STRING option so the vignette can +build offline. We also provide the option (using the switch `local = FALSAE`) to +retrieve edges from STRINGdb online. ### 1. STRINGdb @@ -271,8 +273,16 @@ in previous steps, and filters the returned by interaction type so only `database_transferred` are retained. This ensures that only interactions with more substantial evidence are used in this analysis. +Alternatively, as shown below, the user can download a pre-processed STRINGdb +file that can be used in place of the live online query. +The data can be found on [Zenodo](https://zenodo.org/records/20631767). +Here, we use a small subset of the data downloadable from Zenodo. + ```{r eval = TRUE, echo = TRUE} -stringdb.edges <- GetSTRINGdb.edges(gene.cccn.edges, gene.cccn.nodes) +path <- system.file("extdata", "small_string_hs_hugo.tsv", + package = "PTMsToPathways") +stringdb.edges <- GetSTRINGdb.edges(gene.cccn.edges, gene.cccn.nodes, local=TRUE, + string.local.path = path) stringdb.edges[1:5,] ``` From 2889cc7e07723dde1118030ad569cf3587fd6bba Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 12:53:07 -0600 Subject: [PATCH 02/18] remove buildignore --- .Rbuildignore | 7 +++++++ .gitignore | 3 +-- 2 files changed, 8 insertions(+), 2 deletions(-) create mode 100644 .Rbuildignore diff --git a/.Rbuildignore b/.Rbuildignore new file mode 100644 index 00000000..498cdfb8 --- /dev/null +++ b/.Rbuildignore @@ -0,0 +1,7 @@ +PTMsToPathways.Rproj +.github/ +data-raw/ +pkgdown/ +docs/ +_pkgdown.yml +scripts/ \ No newline at end of file diff --git a/.gitignore b/.gitignore index 4819d431..32554812 100644 --- a/.gitignore +++ b/.gitignore @@ -1,11 +1,10 @@ -.Rbuildignore .Rproj.user .Rhistory .RData .temp *.DS_Store /PTMsToPathways_0.0.0.9000/ -PTMsToPathways_0.0.0.9000.tar.gz +PTMsToPathways*.tar.gz README.html From 316cc3d81db6443effdc4b483e3f2d8986f5fe61 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 13:00:29 -0600 Subject: [PATCH 03/18] ignore vignette outputs --- .Rbuildignore | 6 +++++- .gitignore | 5 +++++ 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/.Rbuildignore b/.Rbuildignore index 498cdfb8..62054c82 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -4,4 +4,8 @@ data-raw/ pkgdown/ docs/ _pkgdown.yml -scripts/ \ No newline at end of file +scripts/ +^vignettes/.*\.html$ +^vignettes/.*\.txt$ +^vignettes/.*\.Rout$ +^vignettes/plots/ \ No newline at end of file diff --git a/.gitignore b/.gitignore index 32554812..58d9853f 100644 --- a/.gitignore +++ b/.gitignore @@ -8,6 +8,11 @@ PTMsToPathways*.tar.gz README.html +vignettes/*.html +vignettes/*.txt +vignettes/*.Rout +vignettes/plots/ + docs/ /Meta/ inst/doc From e0615ef2be8b6604ec049c58bb1d43d15cf861de Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 13:04:48 -0600 Subject: [PATCH 04/18] add package help --- R/PTMsToPathways-package.R | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 R/PTMsToPathways-package.R diff --git a/R/PTMsToPathways-package.R b/R/PTMsToPathways-package.R new file mode 100644 index 00000000..babab066 --- /dev/null +++ b/R/PTMsToPathways-package.R @@ -0,0 +1,21 @@ +#' PTMsToPathways: Filtered CoCluster Correlation Network Guide +#' +#' PTMsToPathways provides tools for turning mass spectrometry data on +#' post-translational modifications into clustered networks, co-cluster +#' correlation networks, and downstream pathway and Cytoscape-ready views. +#' The package includes example PTM tables, BRCA example networks, and helper +#' functions for building CCCNs, cluster-filtered PPIs, and pathway crosstalk +#' networks. +#' +#' Typical entry points are [MakeClusterList()], [MakeCorrelationNetwork()], +#' [BuildClusterFilteredNetwork()], [BuildPathwayCrosstalkNetwork()], and the +#' Cytoscape helpers in [GraphCfn()] and related functions. +#' +#' Example data objects are documented in [data_documentation.R]. +#' +#' @docType package +#' @name PTMsToPathways +#' @aliases PTMsToPathways-package +#' @keywords package +#' @seealso [browseVignettes("PTMsToPathways")] +NULL \ No newline at end of file From 3ef9bde9be7ab1a62eeb5c79452da459cc901961 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 13:56:47 -0600 Subject: [PATCH 05/18] add description of package data --- inst/scripts/README.md | 50 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) create mode 100644 inst/scripts/README.md diff --git a/inst/scripts/README.md b/inst/scripts/README.md new file mode 100644 index 00000000..eca58cbd --- /dev/null +++ b/inst/scripts/README.md @@ -0,0 +1,50 @@ +# PTMsToPathways data provenance + +This directory documents how package data and bundled extdata files are +prepared. + +## Source-of-truth scripts + +- `data-raw/function-key.R` reads `inst/extdata/FunctionKey.txt` and writes + `data/function_key.rda`. +- `data-raw/ex-pathways-list.R` reads the BioPlanet pathway table and writes + `data/ex_pathways_list.rda`. +- `data-raw/ex-creating-networks-data.R` derives the example clustering and + CCCN objects used in the CreatingNetworks vignette. +- `data-raw/full-PCN-edgelist.R` documents the larger example PCN workflow. +- `data-raw/processed-brca.R` derives the BRCA example objects from the BRCA + phosphoproteomics table and local STRING/GeneMANIA/BioPlanet inputs. + +## Bundled extdata sources + +- `inst/extdata/AlldataPTMs.txt` is the larger PTM example used in the + CreatingNetworks vignette. The source URL is documented in the vignette and + points to the package repository copy of the file. +- `inst/extdata/pathway.csv` is a BioPlanet pathway table used by + `ReadBioplanetFile()`; the public source is + https://tripod.nih.gov/bioplanet/download/pathway.csv. +- `inst/extdata/bioplanet_pathway_June2025.csv` is a package-local BioPlanet + snapshot used for vignette and data generation workflows. +- `inst/extdata/PhosphoDiscoData_mmc9.txt` is the BRCA phosphoproteomics input + table used in the BRCA vignette and `data-raw/processed-brca.R`. +- `inst/extdata/PhosDiscoModules_mmc11.txt` is the associated module annotation + table used in the BRCA vignette. +- `inst/extdata/FunctionKey.txt` is the annotation key used to generate + `function_key`. +- `inst/extdata/small_string_hs_hugo.tsv` is the preprocessed local STRING + example used to keep vignette and build-time examples offline. It is a subset + of the dataset available on [Zenodo](https://zenodo.org/record/1234567). +- `inst/extdata/Kinase_Substrate_Dataset.txt` is the kinase-substrate example + input used by `GetKinsub.edges()`. +- `inst/extdata/ex_genemania_interactions.txt` and `inst/extdata/ex_gm_results.txt` + are example GeneMANIA outputs used in the vignettes and tests. + +## Regeneration notes + +- The BRCA example objects are derived from the BRCA phosphoproteomics input, + then filtered through `MakeClusterList()`, `MakeCorrelationNetwork()`, + `GetSTRINGdb.edges()`, `GetGeneMANIA.edges()`, and + `BuildPathwayCrosstalkNetwork()`. +- Several generated data objects rely on randomized clustering. The example + scripts preserve the existing package data rather than overwriting it when the + stochastic outputs would differ. \ No newline at end of file From ce164f504bb1522095dbe56baa2665e162337195 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 13:57:35 -0600 Subject: [PATCH 06/18] delete vignette output --- vignettes/phosdatafile.txt | 909 ------------------------------------- 1 file changed, 909 deletions(-) delete mode 100644 vignettes/phosdatafile.txt diff --git a/vignettes/phosdatafile.txt b/vignettes/phosdatafile.txt deleted file mode 100644 index ad8602a2..00000000 --- a/vignettes/phosdatafile.txt +++ /dev/null @@ -1,909 +0,0 @@ -"AllGeneSymbols" "Amino.Acid" "Positions.Within.Proteins" "Modification.Type" "Peptide.Name" "H3122SEPTM_pTyr.C1" "H3122SEPTM_pTyr.C2" "H3122SEPTM_pTyr.C3" "H3122SEPTM_pTyr.D1" "H3122SEPTM_pTyr.D2" "H3122SEPTM_pTyr.D3" "H3122SEPTM_pTyr.PR1" "H3122SEPTM_pTyr.PR2" "H3122SEPTM_pTyr.PR3" "PC9SEPTM_pTyr.D1" "PC9SEPTM_pTyr.D2" "PC9SEPTM_pTyr.D3" "PC9SEPTM_pTyr.E1" "PC9SEPTM_pTyr.E2" "PC9SEPTM_pTyr.E3" "PC9SEPTM_pTyr.PR1" "PC9SEPTM_pTyr.PR2" "PC9SEPTM_pTyr.PR3" -"KRT7;NA;NA" "S" "37;37;37" "Phosphorylation (STY)" "KRT7 p S37" 505710 1972760 1582330 617875 684340 2006400 272020 285820 314830 5704200 3142900 4132350 2225800 3866600 4090900 1407800 4495650 NA -"KRT7;NA;NA" "S" "38;38;38" "Phosphorylation (STY)" "KRT7 p S38" NA NA NA NA NA NA NA NA 4654900 NA NA NA NA 1225600 NA 8201400 NA NA -"INPPL1" "S" "890" "Phosphorylation (STY)" "INPPL1 p S890" NA NA NA 3086800 2295300 NA NA NA NA NA NA NA NA NA NA NA NA NA -"KDM6A" "S" "388" "Phosphorylation (STY)" "KDM6A p S388" 225480 NA NA 133700 NA 31740000 30006000 NA NA NA NA NA NA NA NA NA NA NA -"DIAPH1" "S" "373" "Phosphorylation (STY)" "DIAPH1 p S373" 226595 260590 236075 NA 185460 132480 NA NA 159430 852670 644585 530150 179835 580485 650985 1036280 344235 333835 -"CTNND1" "S" "252" "Phosphorylation (STY)" "CTNND1 p S252" 561060 697125 175040 NA NA NA 826240 258680 559430 834805 1364815 1751695 911130 441044 793010 674190 913525 298270 -"CTNND1" "S" "225" "Phosphorylation (STY)" "CTNND1 p S225" 9131900 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CTNND1" "S" "230" "Phosphorylation (STY)" "CTNND1 p S230" NA NA 12590000 NA NA NA NA NA NA NA NA NA NA NA 25658000 NA NA NA -"STAM2" "S" "375" "Phosphorylation (STY)" "STAM2 p S375" 1145300 NA NA 1148050 1801300 679270 NA 558580 NA NA NA NA NA NA 219720 NA NA NA -"EGFR" "S" "1166" "Phosphorylation (STY)" "EGFR p S1166" NA NA 193754.5 NA NA NA NA NA NA 2106296 1406650 3073700 29061 81913 53837 2463400 2742900 1775800 -"SPTA1" "S" "37" "Phosphorylation (STY)" "SPTA1 p S37" 660965 1828410 991860 637555 1419950 1090000 3886800 2243500 1985800 82980500 40482500 32440000 60024000 24765500 83349500 72689500 73963000 37637000 -"KRT18" "S" "34" "Phosphorylation (STY)" "KRT18 p S34" NA NA NA 9346200 NA NA NA NA NA NA NA NA NA 3700500 NA NA NA NA -"KRT18" "S" "23" "Phosphorylation (STY)" "KRT18 p S23" 4764800 2941800 4439850 7513650 5333100 7043950 4913600 5824900 3077700 844410 NA NA 2279355 2520500 4775710 3161610 1955150 812960 -"LDHB" "S" "238" "Phosphorylation (STY)" "LDHB p S238" NA 496930 NA NA NA 984030 568925 442040 NA NA NA NA NA NA NA NA NA NA -"ANXA2;ANXA2P2" "S" "26;26" "Phosphorylation (STY)" "ANXA2 p S26; ANXA2P2 p S26" NA NA NA NA 20880000 NA NA NA NA NA NA NA NA NA NA NA NA NA -"HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB3P;HSP90AB2P" "S" "63;63;58;58;58" "Phosphorylation (STY)" "HSP90AA1 p S63; HSP90AA2P p S63; HSP90AB1 p S58; HSP90AB3P p S58; HSP90AB2P p S58" 657590 764450 NA 1194660 919270 1569335 NA NA NA 223200 NA NA NA NA NA NA 414860 NA -"MET" "S" "1236" "Phosphorylation (STY)" "MET p S1236" NA NA NA 414620 NA 449585 1792500 1016060 840995 NA 507270 378650 NA NA NA NA NA NA -"HNRNPA1" "S" "365" "Phosphorylation (STY)" "HNRNPA1 p S365" NA NA NA 2671700 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"MUC1" "S" "1227" "Phosphorylation (STY)" "MUC1 p S1227" NA NA 40344000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CEBPB" "S" "141" "Phosphorylation (STY)" "CEBPB p S141" NA NA NA NA NA NA NA NA NA NA 1728500 NA NA NA NA NA NA NA -"CBL" "S" "675" "Phosphorylation (STY)" "CBL p S675" 196399.5 181225 190845 6690200 1045700 NA 512970 458480 404580 687870 NA 348640 NA NA 85491 793289 446470 193350 -"PTPRE" "S" "694" "Phosphorylation (STY)" "PTPRE p S694" NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1404200 NA NA NA -"EPHA2" "S" "577" "Phosphorylation (STY)" "EPHA2 p S577" NA NA NA 3729900 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"PTPN6" "S" "534" "Phosphorylation (STY)" "PTPN6 p S534" 765080 1257200 NA NA 851950 NA NA 2164400 618460 NA 4719900 1682400 NA 3829100 2234360 NA NA 1756500 -"SHC1" "S" "426" "Phosphorylation (STY)" "SHC1 p S426" NA NA NA NA NA NA NA NA NA 13474000 28937000 20824000 NA 1994550 NA NA NA NA -"RFC2" "S" "162" "Phosphorylation (STY)" "RFC2 p S162" 1163445 1893940 1220895 3324850 2927000 1454000 1062900 1355500 1767150 7357850 5531450 7160100 6745600 7043750 9143650 7275450 8711150 8563450 -"IRS1" "S" "629" "Phosphorylation (STY)" "IRS1 p S629" NA NA NA NA NA NA NA 1843700 NA NA NA NA NA NA NA NA NA NA -"RPS27;RPS27L" "S" "30;30" "Phosphorylation (STY)" "RPS27 p S30; RPS27L p S30" 1044275 1413600 922645 1070490 1473350 1387700 1342250 1725650 1289350 356425 91665 87905.5 173110 103760 333455 269925 170625 124566.5 -"FRK" "S" "496" "Phosphorylation (STY)" "FRK p S496" NA NA NA NA 691830 NA NA NA NA NA NA NA NA NA NA NA NA NA -"FRK" "S" "389" "Phosphorylation (STY)" "FRK p S389" 5467000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"SYK" "S" "202" "Phosphorylation (STY)" "SYK p S202" NA NA NA NA NA NA NA 912030 NA NA NA NA NA NA NA NA NA NA -"SYK" "S" "295" "Phosphorylation (STY)" "SYK p S295" NA NA NA NA NA NA NA NA NA NA 469090 588670 NA 661740 NA NA NA NA -"PXN" "S" "85" "Phosphorylation (STY)" "PXN p S85" 401525 NA NA NA NA 165380 646475 272620 NA 512730 633110 NA NA NA NA 3724780 9716100 8088900 -"PXN" "S" "90" "Phosphorylation (STY)" "PXN p S90" 10096000 NA 2220200 4865600 NA 6530900 11136000 2109500 NA NA NA NA 5934300 27981000 NA NA NA NA -"PXN" "S" "119" "Phosphorylation (STY)" "PXN p S119" 13574100 21984000 11656000 17097500 15114000 21746000 6506800 9961550 9030900 29682000 NA 14383000 87382000 32592000 NA NA 50941000 63643000 -"GSK3B;GSK3A" "S" "215;278" "Phosphorylation (STY)" "GSK3B p S215; GSK3A p S278" 278100000 162530 30462 375770000 148717650 NA NA 198900000 426410000 378530000 NA NA NA NA NA NA NA 100190000 -"ANXA11" "S" "480" "Phosphorylation (STY)" "ANXA11 p S480" 216830 492305 605140 279140 238250 251770 466715 496595 388880 163073 128626.5 202340 145791.5 89514 NA 230560 153670 104640 -"HNRNPA3" "S" "358" "Phosphorylation (STY)" "HNRNPA3 p S358" NA NA NA NA NA NA NA 2056700 NA NA NA NA NA NA NA NA NA NA -"EPHB4" "S" "575" "Phosphorylation (STY)" "EPHB4 p S575" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3945200 NA -"BCAR1" "S" "407" "Phosphorylation (STY)" "BCAR1 p S407" 163730 159600 157500 104910 101212.5 130573 NA 112615.5 179080 371820 256415 456790 295960 546665 NA 585150 NA NA -"MAGOH;MAGOHB" "S" "38;40" "Phosphorylation (STY)" "MAGOH p S38; MAGOHB p S40" 1824100 NA NA NA NA NA NA NA 1314900 NA NA NA NA NA NA NA NA NA -"DYNLL1;DYNLL2" "S" "64;64" "Phosphorylation (STY)" "DYNLL1 p S64; DYNLL2 p S64" NA NA NA NA 2194800 2239900 NA NA NA NA 2036300 1938800 NA NA NA NA NA NA -"PRKCD" "S" "304" "Phosphorylation (STY)" "PRKCD p S304" NA NA NA NA NA NA NA NA NA 1088340 186390 215350 168780 298236.5 253720 NA 748560 NA -"PCDH1" "S" "1018" "Phosphorylation (STY)" "PCDH1 p S1018" NA 563220 188940 NA 433650 148820 NA 214610 NA 403620 NA 736680 NA NA 37187 98413 68627 NA -"AHNAK" "S" "5832" "Phosphorylation (STY)" "AHNAK p S5832" NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2402000 NA NA NA -"AHNAK" "S" "5841" "Phosphorylation (STY)" "AHNAK p S5841" NA NA NA NA NA NA NA NA NA 3277335 255930 4062500 263610 957970 NA 245310 201820 707460 -"ARHGEF5" "S" "1139" "Phosphorylation (STY)" "ARHGEF5 p S1139" NA NA NA NA NA NA NA 1211300 NA NA NA NA NA NA NA NA NA NA -"SRSF9" "S" "178" "Phosphorylation (STY)" "SRSF9 p S178" NA NA NA NA 6750100 NA 7369900 NA NA NA NA NA NA NA NA NA NA NA -"RIPK1" "S" "389" "Phosphorylation (STY)" "RIPK1 p S389" NA NA NA NA 623000 NA NA NA NA NA NA NA NA NA NA NA NA NA -"URB2" "S" "18" "Phosphorylation (STY)" "URB2 p S18" NA NA NA NA NA NA 1171405 242330 2116500 NA 175110 NA NA 119620 NA NA 379880 246400 -"EIF2B1" "S" "131" "Phosphorylation (STY)" "EIF2B1 p S131" 519225 612795 519680 349545 243510 449855 471760 517990 406355 NA NA NA NA NA NA NA NA NA -"CTTN" "S" "156" "Phosphorylation (STY)" "CTTN p S156" 2244800 11768000 5291650 14647000 NA 16795000 4000400 16498000 NA 197294 101700 98661 NA NA 175328 212745 132075.5 NA -"CTTN" "S" "447" "Phosphorylation (STY)" "CTTN p S447" NA NA NA NA NA NA NA NA NA 1433100 480100 575670 NA 1518800 NA NA 1146600 NA -"CTTN" "S" "150" "Phosphorylation (STY)" "CTTN p S150" NA 2042700 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CTTN" "S" "417" "Phosphorylation (STY)" "CTTN p S417" NA 307044 513590 215230 490510 840960 NA 776110 NA 104770 NA NA NA NA NA NA NA NA -"CTTN" "S" "418" "Phosphorylation (STY)" "CTTN p S418" NA 307044 513590 215230 490510 840960 NA 776110 NA 104770 NA NA NA NA NA NA NA NA -"PRKD1" "S" "251" "Phosphorylation (STY)" "PRKD1 p S251" NA 763960 621800 NA 2664350 1938250 723870 759290 371450 NA NA NA NA NA NA NA NA NA -"SHB" "S" "265" "Phosphorylation (STY)" "SHB p S265" NA 1183000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"SHB" "S" "247" "Phosphorylation (STY)" "SHB p S247" NA NA NA NA 1317900 1092495 924680 NA NA NA NA NA NA NA NA NA NA NA -"HSP90AB4P" "S" "34" "Phosphorylation (STY)" "HSP90AB4P p S34" 657590 764450 NA 1194660 919270 1569335 NA NA NA 223200 NA NA NA NA NA NA 414860 NA -"TNS3" "S" "776" "Phosphorylation (STY)" "TNS3 p S776" NA NA NA NA NA NA NA NA NA NA 923620 NA NA NA NA NA 862470 NA -"TNS3" "S" "602" "Phosphorylation (STY)" "TNS3 p S602" NA NA NA NA NA NA NA NA NA NA NA NA NA 181030 773600 NA NA NA -"TNS3" "S" "332" "Phosphorylation (STY)" "TNS3 p S332" 1898150 3486700 77903 52123 45559.5 2176900 1023400 NA NA 12763000 78967 3467400 4115900 4521600 4872600 3345250 933315.5 1925600 -"NOL8" "S" "723" "Phosphorylation (STY)" "NOL8 p S723" NA NA NA NA NA NA NA NA NA 37911 17060.5 13608.5 26438 NA 29327 NA NA NA -"SPRED2" "S" "250" "Phosphorylation (STY)" "SPRED2 p S250" NA NA 1327200 1088555 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"ZC3H18" "S" "487" "Phosphorylation (STY)" "ZC3H18 p S487" NA NA NA NA NA NA NA NA NA 906290 1382600 4041550 2259400 2245150 5168000 1376500 3183610 1522300 -"ZC3H18" "S" "492" "Phosphorylation (STY)" "ZC3H18 p S492" NA NA NA NA NA NA NA NA NA 906290 1382600 4041550 2259400 2245150 5168000 1376500 3183610 1522300 -"LSR" "S" "365" "Phosphorylation (STY)" "LSR p S365" 4011000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"LSR" "S" "371" "Phosphorylation (STY)" "LSR p S371" NA NA NA 5720800 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"ARHGAP12" "S" "240" "Phosphorylation (STY)" "ARHGAP12 p S240" NA NA NA NA NA NA NA NA NA 564380 608570 3094000 831920 810850 NA 1984500 NA 4102650 -"AFAP1L2" "S" "414" "Phosphorylation (STY)" "AFAP1L2 p S414" NA NA NA NA NA NA NA NA NA 16210000 4872000 NA 5124700 6026600 11201900 NA 6847500 6890700 -"DCBLD1" "S" "619" "Phosphorylation (STY)" "DCBLD1 p S619" NA 1092915 258060 947805 1105335 919999 NA 775430 332180 NA NA NA NA NA NA NA NA NA -"GPRC5A" "S" "345" "Phosphorylation (STY)" "GPRC5A p S345" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 548095 1391000 3028100 -"GPRC5A" "S" "301" "Phosphorylation (STY)" "GPRC5A p S301" NA NA NA NA NA NA NA NA NA 2170400 NA NA 15768 NA 1326550 5293686 394390 973510 -"S100A16" "S" "27" "Phosphorylation (STY)" "S100A16 p S27" 13113000 NA NA 2234500 NA NA 17162000 16265000 NA NA NA NA NA NA NA NA NA NA -"PKP4" "S" "273" "Phosphorylation (STY)" "PKP4 p S273" 547910 160050 240720 895090 719880 911195 1052350 631380 1003420 NA NA NA NA NA NA NA NA NA -"DOK1" "S" "450" "Phosphorylation (STY)" "DOK1 p S450" NA NA NA 1322800 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CDCP1" "S" "803" "Phosphorylation (STY)" "CDCP1 p S803" NA NA NA NA NA NA NA NA NA NA NA 26760000 NA NA NA NA NA NA -"GAREM1" "S" "700" "Phosphorylation (STY)" "GAREM1 p S700" NA NA NA 1309800 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"EML4" "S" "242" "Phosphorylation (STY)" "EML4 p S242" NA NA NA 225945 871060 NA 191360 357545 NA NA NA NA NA NA NA NA NA NA -"S100A14" "S" "33" "Phosphorylation (STY)" "S100A14 p S33" 444075 421730 382730 244535 NA 449630 240630 831945 544520 NA NA NA 143590 NA NA 47489 NA NA -"ARHGAP35" "S" "1106" "Phosphorylation (STY)" "ARHGAP35 p S1106" NA NA NA NA NA NA NA NA NA 979840 NA 1582300 NA NA NA 1909000 NA NA -"PAG1" "S" "354" "Phosphorylation (STY)" "PAG1 p S354" NA NA NA NA 8268300 NA NA NA NA NA NA NA NA NA NA NA NA NA -"TJP2" "S" "266" "Phosphorylation (STY)" "TJP2 p S266" NA 344940 166830 151870 NA NA NA NA 124590 413845 439110 606985 349575 389000 491950 494400 722320 782275 -"TJP2" "S" "1006" "Phosphorylation (STY)" "TJP2 p S1006" NA NA NA NA NA 3112400 3030700 NA NA 1427500 NA NA 1513200 NA NA NA NA NA -"ALK" "S" "1509" "Phosphorylation (STY)" "ALK p S1509" NA NA NA 53509000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"DAPP1" "S" "141" "Phosphorylation (STY)" "DAPP1 p S141" NA NA NA NA NA NA NA NA NA NA NA NA NA 431510 NA NA NA NA -"SHANK2" "S" "611" "Phosphorylation (STY)" "SHANK2 p S611" 574890 354030 274845 541235 358055 386665 792515 539280 758295 3903230 2248570 2702950 4294550 2106000 3023020 2736900 2320235 3060650 -"SHANK2" "S" "589" "Phosphorylation (STY)" "SHANK2 p S589" NA NA NA NA NA NA 137940 73631 NA 227425 111522.5 118981 95474.5 115836.5 158026.5 117847 189246.5 198095 -"ICK" "S" "152" "Phosphorylation (STY)" "ICK p S152" NA 1759100 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"GAB2" "S" "622" "Phosphorylation (STY)" "GAB2 p S622" 322660 730440 95432 NA 1664500 NA NA NA NA NA 109020 386370 NA NA NA 188990 111800 156840 -"GAB2" "S" "623" "Phosphorylation (STY)" "GAB2 p S623" NA NA NA NA NA NA NA NA 1848800 NA NA NA NA NA NA NA NA NA -"IRS2" "S" "820" "Phosphorylation (STY)" "IRS2 p S820" 878780 1679800 560750 1238000 2424200 NA NA NA NA 102950 NA NA NA NA 2200600 NA NA NA -"IRS2" "S" "740" "Phosphorylation (STY)" "IRS2 p S740" NA NA NA NA 1723200 NA NA NA NA NA NA NA NA NA NA NA NA NA -"CDC42BPB" "S" "1640" "Phosphorylation (STY)" "CDC42BPB p S1640" 115180 NA NA 139770 263890 241510 NA NA NA 421795 326260 305245 435115 358745 2937995 737485 151480 382715 -"F11R" "S" "284" "Phosphorylation (STY)" "F11R p S284" NA 350540 306330 NA 558240 300150 667235 1219400 962470 NA NA 200070 NA NA 155389 NA 74752 NA -"PIK3C2B" "T" "1400" "Phosphorylation (STY)" "PIK3C2B p T1400" 1762800 NA NA NA NA NA 1713400 NA NA NA NA NA NA NA NA NA NA NA -"MAPK13" "T" "180" "Phosphorylation (STY)" "MAPK13 p T180" NA NA NA NA 215340000 NA NA 988300 64777000 42712000 NA 168600000 NA NA 711440 1820800 65175 84329 -"MAPK13" "T" "185" "Phosphorylation (STY)" "MAPK13 p T185" NA NA NA NA 86236000 NA NA NA NA NA NA NA NA NA 1227300 NA NA 672720 -"KDM6A" "T" "387" "Phosphorylation (STY)" "KDM6A p T387" 225480 NA NA 133700 NA 31740000 30006000 NA NA NA NA NA NA NA NA NA NA NA -"SPAG7" "T" "188" "Phosphorylation (STY)" "SPAG7 p T188" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 751310 NA NA -"TIPRL" "T" "208" "Phosphorylation (STY)" "TIPRL p T208" 2485900 1240800 1267100 1020800 1371300 3587200 1407900 NA NA NA NA NA NA NA NA NA NA NA -"ABL1;ABL2" "T" "392;438" "Phosphorylation (STY)" "ABL1 p T392; ABL2 p T438" NA NA 1496700 NA NA 1475500 NA NA NA NA NA NA NA NA NA NA NA NA -"ABL1;ABL2" "T" "394;440" "Phosphorylation (STY)" "ABL1 p T394; ABL2 p T440" NA NA NA NA NA NA 1280400 NA NA NA NA NA NA NA NA NA NA NA -"EGFR" "T" "1141" "Phosphorylation (STY)" "EGFR p T1141" NA NA NA NA NA NA NA NA NA NA NA 6200700 NA NA NA NA NA NA -"ERBB2" "T" "875" "Phosphorylation (STY)" "ERBB2 p T875" 7927500 NA 6048400 NA NA NA NA 5196000 NA 96209000 NA NA NA NA NA NA NA NA -"LCK;SRC;FYN;YES1" "T" "395;420;421;427" "Phosphorylation (STY)" "LCK p T395; SRC p T420; FYN p T421; YES1 p T427" NA 208150000 139928000 NA 133640000 NA NA NA 79658000 NA 74784000 NA 285800000 NA NA 135820000 NA NA -"CDK1;CDK2;CDK3" "T" "14;14;14" "Phosphorylation (STY)" "CDK1 p T14; CDK2 p T14; CDK3 p T14" 10051550 15194250 17601650 1378575 1116485 9677500 1081240 953075 1455860 125599000 110559000 140097000 171840000 223925000 270510000 250680000 295995000 299740000 -"LYN;HCK" "T" "398;412" "Phosphorylation (STY)" "LYN p T398; HCK p T412" NA 472130 NA 819770 NA NA 1009300 1089100 747810 NA NA NA NA NA 633960 NA 762940 NA -"G6PD" "T" "402" "Phosphorylation (STY)" "G6PD p T402" NA NA NA NA NA NA NA NA NA 3430400 2519300 NA 3801300 NA NA NA NA 7983600 -"PKM" "T" "80" "Phosphorylation (STY)" "PKM p T80" NA NA NA NA NA 6688800 NA NA NA NA NA NA NA NA NA NA NA NA -"AKR1B1" "T" "192" "Phosphorylation (STY)" "AKR1B1 p T192" NA NA NA NA NA NA NA NA NA 5738900 NA NA NA NA NA NA NA NA -"MAOA" "T" "435" "Phosphorylation (STY)" "MAOA p T435" 2772250 1105735 1448760 3213700 1564155 1026435 1557895 1315285 1329375 22083400 9929900 7258800 26013000 14542900 NA 16425000 35171000 32250000 -"MAOA" "T" "437" "Phosphorylation (STY)" "MAOA p T437" 2772250 1105735 1448760 3213700 1564155 1026435 1557895 1315285 1329375 22083400 9929900 7258800 26013000 14542900 NA 16425000 35171000 32250000 -"MAOA" "T" "439" "Phosphorylation (STY)" "MAOA p T439" 2772250 1105735 1448760 3213700 1564155 1026435 1557895 1315285 1329375 22083400 9929900 7258800 26013000 14542900 NA 16425000 35171000 32250000 -"EPHA1" "T" "780" "Phosphorylation (STY)" "EPHA1 p T780" NA NA NA NA NA NA NA NA NA NA NA 5964200 NA NA NA NA 7492700 5280000 -"TGM2" "T" "368" "Phosphorylation (STY)" "TGM2 p T368" NA NA NA NA NA NA NA NA NA NA NA NA 1696100 NA NA NA 2809500 NA -"GART" "T" "349" "Phosphorylation (STY)" "GART p T349" NA NA NA NA 5491900 NA NA NA NA NA NA NA NA NA NA NA NA NA -"ACP1" "T" "85" "Phosphorylation (STY)" "ACP1 p T85" 125725 186170 109450 218965 307585 224230 38880 NA NA NA NA NA NA NA NA NA NA NA -"MAPK3" "T" "207" "Phosphorylation (STY)" "MAPK3 p T207" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1811300 -"PIK3R1" "T" "471" "Phosphorylation (STY)" "PIK3R1 p T471" NA NA NA NA NA NA NA 4354100 NA NA NA NA NA NA NA NA NA NA -"PIK3R1" "T" "369" "Phosphorylation (STY)" "PIK3R1 p T369" NA NA 619250 222660 NA NA 890700 782530 NA NA NA NA NA NA 164680 NA 96341 NA -"MAPK1" "T" "185" "Phosphorylation (STY)" "MAPK1 p T185" NA NA NA NA NA NA NA NA 132960 1868000 562070 NA NA 135470 44467 290200 132960 199930 -"EPHA2" "T" "587" "Phosphorylation (STY)" "EPHA2 p T587" 708640 624745 1543070 660660 392750 1024300 376620 1129600 154500 5475155 2777080 3973410 6054550 2680200 7263685 6483900 5428700 1956850 -"EPHA2" "T" "593" "Phosphorylation (STY)" "EPHA2 p T593" 449480 458060 1350980 1012685 NA 433910 409705 1090370 NA 1209935 399390 1442985 1157625 158100 8936670 103540 7141200 NA -"EPHA2" "T" "771" "Phosphorylation (STY)" "EPHA2 p T771" NA NA NA NA 7132200 NA 58574000 NA NA NA 9851000 NA NA 26012000 NA NA NA NA -"EPHA3;EPHA4;EPHA5" "T" "781;781;835" "Phosphorylation (STY)" "EPHA3 p T781; EPHA4 p T781; EPHA5 p T835" NA NA 7949800 11331000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"RFC2" "T" "157" "Phosphorylation (STY)" "RFC2 p T157" 1163445 1893940 1220895 3324850 2927000 1454000 1062900 1355500 1767150 7357850 5531450 7160100 6745600 7043750 9143650 7275450 8711150 8563450 -"RFC2" "T" "164" "Phosphorylation (STY)" "RFC2 p T164" 1163445 1893940 1220895 3324850 2927000 1454000 1062900 1355500 1767150 7357850 5531450 7160100 6745600 7043750 9143650 7275450 8711150 8563450 -"IRS1" "T" "88" "Phosphorylation (STY)" "IRS1 p T88" NA 40004 987490 3877900 3176800 6185700 4643100 6085600 5106900 127450 NA 83735 85947 NA 37636 99024.5 84952 74154 -"MAPK12" "T" "188" "Phosphorylation (STY)" "MAPK12 p T188" NA NA NA NA NA NA NA 3814200 NA NA NA NA NA NA NA NA NA NA -"BCAR1" "T" "385" "Phosphorylation (STY)" "BCAR1 p T385" NA NA 1501200 1790100 NA 1728700 NA NA 3932900 44527000 NA 23979500 NA 18403000 9913200 18314000 NA NA -"GSDMD" "T" "161" "Phosphorylation (STY)" "GSDMD p T161" NA NA NA NA NA NA NA NA 1224200 NA NA NA NA NA NA NA NA NA -"ACTG1;ACTB" "T" "297;297" "Phosphorylation (STY)" "ACTG1 p T297; ACTB p T297" 4156400 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 845090 -"GRB2" "T" "159" "Phosphorylation (STY)" "GRB2 p T159" NA NA NA 2589300 115078 91186.5 NA NA NA NA NA NA NA NA NA NA NA NA -"RPS21" "T" "52" "Phosphorylation (STY)" "RPS21 p T52" NA NA NA NA NA NA NA NA NA NA 209310 NA NA NA NA NA NA NA -"RACK1" "T" "229" "Phosphorylation (STY)" "RACK1 p T229" 863060 NA 1058900 NA NA 622570 NA 699100 NA NA NA NA NA NA NA NA NA NA -"EEF1A1;EEF1A1P5;EEF1A2" "T" "142;142;142" "Phosphorylation (STY)" "EEF1A1 p T142; EEF1A1P5 p T142; EEF1A2 p T142" NA NA NA 8002800 NA NA NA NA NA 3186200 3137400 NA 41002 NA NA 1554400 1113300 1064500 -"CDK5" "T" "14" "Phosphorylation (STY)" "CDK5 p T14" NA NA NA NA NA NA NA NA NA NA 7137900 NA NA NA NA NA NA NA -"CDK16;CDK17" "T" "175;202" "Phosphorylation (STY)" "CDK16 p T175; CDK17 p T202" NA NA NA NA NA NA NA NA NA NA NA NA NA 2483700 5294100 7277900 NA 8828300 -"NFKB2" "T" "76" "Phosphorylation (STY)" "NFKB2 p T76" NA NA 19367000 NA NA NA 6894200 NA NA NA NA NA NA NA NA NA NA NA -"CAV1" "T" "15" "Phosphorylation (STY)" "CAV1 p T15" NA NA NA NA NA NA NA NA NA 2706900 1948815 1939250 2006355 2038650 3937500 1682021.5 2407020 1505100 -"PTK2" "T" "929" "Phosphorylation (STY)" "PTK2 p T929" NA NA NA NA NA NA NA 1528800 NA NA NA NA NA NA NA NA NA NA -"PTK2" "T" "575" "Phosphorylation (STY)" "PTK2 p T575" 3605300 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2580900 -"PTPN11" "T" "547" "Phosphorylation (STY)" "PTPN11 p T547" 3385750 2849250 926390 17845500 15591000 6626500 24494000 14993500 15682000 NA NA NA NA NA NA NA NA NA -"PTPN11" "T" "59" "Phosphorylation (STY)" "PTPN11 p T59" NA NA NA NA NA NA NA NA NA 47041000 NA NA NA NA NA NA NA NA -"ZNF33B;ZNF33A" "T" "597;596" "Phosphorylation (STY)" "ZNF33B p T597; ZNF33A p T596" 167684.5 99380.5 56483 319635 119320 184130 244590 243960 264715 NA NA NA NA NA NA NA NA NA -"TNK2" "T" "517" "Phosphorylation (STY)" "TNK2 p T517" 1677900 3940950 NA NA NA 3715400 2678975 1118100 1039200 909430 8184000 11248000 1720900 NA 7083500 1358800 2501535 4106900 -"TNK2" "T" "829" "Phosphorylation (STY)" "TNK2 p T829" NA NA NA NA NA NA NA 7691800 NA NA NA NA NA NA NA NA NA NA -"SRSF1" "T" "187" "Phosphorylation (STY)" "SRSF1 p T187" NA NA 3017650 3919100 NA NA NA 2524200 2240200 NA NA NA NA NA NA NA NA NA -"EPS8" "T" "499" "Phosphorylation (STY)" "EPS8 p T499" 352210 NA 382320 791490 2689800 NA 332120 NA 124530 150610 314890 NA 434895 334110 373560 2648045 NA 266860 -"ADAM9" "T" "761" "Phosphorylation (STY)" "ADAM9 p T761" NA 499790 744790 1037900 1011300 783570 926120 580465 1133965 1959365 NA 485360 56537 207900 4365400 NA NA 3228800 -"MAPK14" "T" "180" "Phosphorylation (STY)" "MAPK14 p T180" 2625000 3061435 1542415 1289050 798780 2279300 NA NA 233680 17444600 12537000 4833345 7743500 4521224.5 6865855 3404470 5153205 3280600 -"MAPK14" "T" "185" "Phosphorylation (STY)" "MAPK14 p T185" NA NA NA NA 164140000 172060000 NA NA NA NA NA NA NA NA NA NA NA NA -"TJAP1" "T" "354" "Phosphorylation (STY)" "TJAP1 p T354" 978000 943255 733100 2079050 1530150 1820260 1119285 414900 516210 575368 315330 NA 636060 266360 1169400 NA NA 52148 -"CRYBG3" "T" "228" "Phosphorylation (STY)" "CRYBG3 p T228" 577500 785850 676840 2019800 837830 876830 457020 1008280 558620 891505 592425 NA 540830 960330 517710 94256 NA 617045 -"PRAG1" "T" "407" "Phosphorylation (STY)" "PRAG1 p T407" NA NA NA NA NA 11608000 NA 3573800 10420000 NA NA NA NA NA NA NA NA NA -"HIPK2;HIPK1" "T" "360;351" "Phosphorylation (STY)" "HIPK2 p T360; HIPK1 p T351" 758540 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"ARHGAP12" "T" "230" "Phosphorylation (STY)" "ARHGAP12 p T230" NA NA NA NA NA NA NA NA NA NA NA 3094000 NA NA NA NA NA 2336100 -"ARHGAP12" "T" "231" "Phosphorylation (STY)" "ARHGAP12 p T231" NA NA NA NA NA NA NA NA NA 564380 608570 3094000 831920 810850 NA 1984500 NA 4102650 -"GPRC5A" "T" "315" "Phosphorylation (STY)" "GPRC5A p T315" NA NA 197490 NA NA 273840 NA 268280 NA 3154865 722060 NA 1715450 NA 2257700 NA 485160 37958 -"UTP15" "T" "87" "Phosphorylation (STY)" "UTP15 p T87" NA NA NA NA NA 1739000 NA NA NA NA NA NA NA NA NA NA NA NA -"CSRNP3" "T" "271" "Phosphorylation (STY)" "CSRNP3 p T271" NA 74187 44534.5 1227400 NA NA 3523300 3624650 3120400 1549400 1864470 318232 NA 20825 420990 NA 103460 NA -"PIK3R3" "T" "203" "Phosphorylation (STY)" "PIK3R3 p T203" NA NA NA NA NA NA NA 4354100 NA NA NA NA NA NA NA NA NA NA -"DYRK4;DYRK2" "T" "263;381" "Phosphorylation (STY)" "DYRK4 p T263; DYRK2 p T381" NA NA NA NA NA 7768600 NA NA NA NA NA NA NA NA NA NA NA NA -"EMG1" "T" "60" "Phosphorylation (STY)" "EMG1 p T60" NA 828610 2009300 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"LPP" "T" "316" "Phosphorylation (STY)" "LPP p T316" 1266040 1464220 473940 701660 NA NA 2230585 2830000 2865200 253540 255460 1442365 1828935 1151300 3044100 327190 NA 694010 -"C11orf52" "T" "101" "Phosphorylation (STY)" "C11orf52 p T101" NA 3050800 NA NA NA 3308000 NA NA NA NA NA NA NA NA NA NA NA NA -"C11orf52" "T" "105" "Phosphorylation (STY)" "C11orf52 p T105" 7057250 10211000 4705700 9246200 5140050 NA 8203050 2732400 6520150 9418600 980730 9320300 NA 7155200 1848900 3940250 850200 4075600 -"PDLIM5" "T" "248" "Phosphorylation (STY)" "PDLIM5 p T248" NA NA NA NA NA 1054000 NA NA NA NA NA NA NA NA NA NA NA NA -"DCBLD2" "T" "734" "Phosphorylation (STY)" "DCBLD2 p T734" NA NA NA NA 1488900 NA NA NA NA NA NA NA NA NA NA NA NA NA -"CNN2" "T" "186" "Phosphorylation (STY)" "CNN2 p T186" NA NA NA 557270 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"PKP4" "T" "477" "Phosphorylation (STY)" "PKP4 p T477" 801780 NA NA NA 2462900 2027330 655500 3095100 2861600 1653330 512420 458690 1144215 471530 668530 1505900 647835 1587900 -"PKP4" "T" "412" "Phosphorylation (STY)" "PKP4 p T412" NA NA 2988100 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"PKP4" "T" "1166" "Phosphorylation (STY)" "PKP4 p T1166" 1676200 NA NA NA NA NA NA 2789500 NA NA NA NA NA NA NA NA NA NA -"PKP2" "T" "216" "Phosphorylation (STY)" "PKP2 p T216" NA NA NA NA NA NA NA NA NA 1230450 913220 938410 1332600 513115 726845 1041705 611350 898555 -"ESYT1" "T" "824" "Phosphorylation (STY)" "ESYT1 p T824" 1939600 1870200 1399800 NA NA NA 1264300 1564900 NA NA NA NA NA NA NA NA NA NA -"CDCP1" "T" "807" "Phosphorylation (STY)" "CDCP1 p T807" 2704600 NA NA NA NA NA NA NA NA 9510700 2355800 NA NA NA NA 2636700 NA 2294900 -"PLEKHA5" "T" "399" "Phosphorylation (STY)" "PLEKHA5 p T399" 1998900 NA NA 5078100 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"EML4" "T" "252" "Phosphorylation (STY)" "EML4 p T252" 349700 234299 145578.5 NA NA 1055600 NA NA 604030 NA NA NA NA NA NA NA NA NA -"CDV3" "T" "182" "Phosphorylation (STY)" "CDV3 p T182" NA NA NA NA NA NA NA NA NA NA NA NA 2030900 NA NA NA NA NA -"ALK" "T" "1506" "Phosphorylation (STY)" "ALK p T1506" 14481000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"ANKRD26" "T" "295" "Phosphorylation (STY)" "ANKRD26 p T295" NA NA NA NA NA NA NA NA NA NA NA 1580700 NA NA NA NA NA NA -"ICK" "T" "157" "Phosphorylation (STY)" "ICK p T157" 466945 478400 778510 263580 357335 969270 486180 316950 444115 625607.5 NA 476545 607045 431696 1599565 761470 169960 237760 -"KRT8;NA;NA;NA;KRT75;NA" "Y" "267;267;340;347;327;327" "Phosphorylation (STY)" "KRT8 p Y267; KRT75 p Y267; KRT8 p Y340; KRT75 p Y347; KRT8 p Y327; KRT75 p Y327" 528960 493490 241190 414425 433570 603690 464955 543475 450285 118260 256845 337350 395470 293890 333905 338640 137200 514330 -"KRT8;NA" "Y" "10;10" "Phosphorylation (STY)" "KRT8 p Y10" 1626805 606080 540400 797350 461050 275110 2321200 1697255 1798620 237430 984535 1314540 218130 452930 554870 983650 350870 680030 -"KRT8;NA" "Y" "25;25" "Phosphorylation (STY)" "KRT8 p Y25" 14466000 9124050 10605550 20121000 15506650 16265550 11739300 3614800 13001300 2660000 708017.5 1084870 963500 2322700 74834 2591200 1840880 1469665 -"NA;KRT19" "Y" "391;391" "Phosphorylation (STY)" "KRT19 p Y391" 316740 417310 757120 NA 1054115 1526715 951600 2192000 890445 848095 391780 453790 474279.5 499645 580230 1077032.5 162200 238330 -"KRT7;NA;NA;NA" "Y" "205;205;205;246" "Phosphorylation (STY)" "KRT7 p Y205; KRT7 p Y246" 1974700 1847600 1580750 1519950 1499800 2054650 1233215 1795250 1960050 164350 346230 198050 448710 361300 387390 448050 458920 439190 -"KRT7;NA;NA" "Y" "40;40;40" "Phosphorylation (STY)" "KRT7 p Y40" 74174000 74957500 64046500 78971500 55782000 74375500 39454440 61542000 62245500 119947500 87547500 93288500 160343000 93806500 82637000 192297500 118086000 140046000 -"KRT7;NA;NA" "Y" "55;55;55" "Phosphorylation (STY)" "KRT7 p Y55" 2397950 2249350 2008850 2923600 1994700 4249800 1255200 1592600 NA 1618900 358005 NA 927555 127590 1997900 2087140 NA 836550 -"SH3PXD2B" "Y" "25" "Phosphorylation (STY)" "SH3PXD2B p Y25" NA 26530 NA 518670 NA 1097400 NA NA 673930 NA NA NA NA NA 134789.5 76299 NA NA -"PIPSL;PIP5K1C;PIP5K1A" "Y" "89;136;142" "Phosphorylation (STY)" "PIPSL p Y89; PIP5K1C p Y136; PIP5K1A p Y142" 936570 1011505 707005 668725 656845 667175 1835300 1754623 1404800 NA NA NA NA NA NA NA NA NA -"ARHGAP32" "Y" "1520" "Phosphorylation (STY)" "ARHGAP32 p Y1520" 960825 444670 739630 1461150 763630 1354235 1042000 1362655 NA 436010 NA 307090 NA NA 99381.5 158310.5 32374 71554 -"ARHGAP32" "Y" "1557" "Phosphorylation (STY)" "ARHGAP32 p Y1557" 438960 690680 342430 826420 789660 1316290 1772960 2025515 1563030 46618 51805 86359 130965 93775 142799 71077 129096.5 66633 -"ARHGAP32" "Y" "1537" "Phosphorylation (STY)" "ARHGAP32 p Y1537" NA 135570 30357 399480 316755 417320 550755 390780 576040 NA NA NA NA NA NA NA NA NA -"CYSRT1" "Y" "12" "Phosphorylation (STY)" "CYSRT1 p Y12" 1130255 1984800 740035 2165450 1590350 2202200 1280275 1151595 898705 214365 173735.5 92495 267175.5 213051 82797 679450 95057 280295 -"AJM1" "Y" "469" "Phosphorylation (STY)" "AJM1 p Y469" 121495 147870 21824 224360 250555 288470 297200 311120 335285 NA NA NA NA 10900 24150 NA NA NA -"DDX39A;DDX39B" "Y" "38;39" "Phosphorylation (STY)" "DDX39A p Y38; DDX39B p Y39" NA NA NA NA 282660 654855 NA NA NA NA NA NA 80566 NA 399980 139381 77544 NA -"ACOT7" "Y" "194" "Phosphorylation (STY)" "ACOT7 p Y194" 1519450 1764155 252040 480520 494940 404300 1150600 904990 305300 NA 470140 520360 1734200 NA NA NA 3042500 NA -"AIP" "Y" "202" "Phosphorylation (STY)" "AIP p Y202" 359060 370635 282475 268645 332620 454155 207180 290915 291035 61046.5 35287 35993 NA 37239 30442 NA 28436 40290 -"AIP" "Y" "203" "Phosphorylation (STY)" "AIP p Y203" 359060 370635 282475 268645 332620 454155 207180 290915 291035 61046.5 35287 35993 NA 37239 30442 NA 28436 40290 -"ARVCF" "Y" "201" "Phosphorylation (STY)" "ARVCF p Y201" 663290 497090 539450 1288185 923530 697990 1067790 839777 NA 127280 NA NA 142100 NA 461240 NA 251780 NA -"WASL" "Y" "256" "Phosphorylation (STY)" "WASL p Y256" 24164000 34781000 27760500 19822500 26625500 26012000 15607000 13998000 14971000 29627500 31920500 34378500 32883000 20608000 27264500 12400000 12176000 17722000 -"PIK3R2" "Y" "505" "Phosphorylation (STY)" "PIK3R2 p Y505" NA NA NA 356140 NA NA 938470 470430 780210 NA NA NA NA NA NA NA NA NA -"DDX3X;DDX3Y" "Y" "69;69" "Phosphorylation (STY)" "DDX3X p Y69; DDX3Y p Y69" NA NA NA 4118800 3001100 3290050 2211350 2082415 1782000 NA 2555500 NA NA NA NA NA NA NA -"DDX3X;DDX3Y" "Y" "266;264" "Phosphorylation (STY)" "DDX3X p Y266; DDX3Y p Y264" 443950 350090 411465 555380 NA 312420 322595 200130 274915 94307 95837 149530 149100.5 105210 158282 129277.5 129420 55825.5 -"PIK3C2B" "Y" "1401" "Phosphorylation (STY)" "PIK3C2B p Y1401" 5509900 3848750 3958950 2661650 3472550 4208900 5511400 7012300 3368700 NA NA NA NA NA NA NA NA NA -"PIK3C2B" "Y" "1541" "Phosphorylation (STY)" "PIK3C2B p Y1541" 2189600 2363800 1684950 NA 1849500 1668450 4271500 3676300 NA NA NA NA NA NA NA NA NA NA -"CLDN4" "Y" "208" "Phosphorylation (STY)" "CLDN4 p Y208" 3698850 4771400 3381400 3570050 1826800 3758100 3843200 3835550 3237700 1145380 232039 150706.5 450620 NA 740345 1237540 702495 304710 -"ADAM10" "Y" "741" "Phosphorylation (STY)" "ADAM10 p Y741" 304555 277000 74354 235375 235630 233570 253850 255570 270480 412205 270825 318915 500790 293655 187470 315255 109340 313690 -"HGS" "Y" "286" "Phosphorylation (STY)" "HGS p Y286" 605580 865660 606040 2158700 1894400 1994300 878995 827430 746655 718200 757100 611490 643000 688515 566770 428730 576825 639810 -"SEC16A" "Y" "813" "Phosphorylation (STY)" "SEC16A p Y813" 1224100 3003550 1060500 2967800 3403950 NA 3496700 1417100 3259200 1211895 489430 NA 504995 681350 NA 188910 367442 438725 -"SEC16A" "Y" "1031" "Phosphorylation (STY)" "SEC16A p Y1031" 577850 387980 252845 1139300 486730 267390 296845 288534 198029 NA NA NA NA NA NA NA NA NA -"ZNF185" "Y" "581" "Phosphorylation (STY)" "ZNF185 p Y581" NA 601200 242420 1195400 NA 1629460 506070 1024670 851340 NA NA NA NA NA NA NA 214830 355860 -"MAPK13" "Y" "182" "Phosphorylation (STY)" "MAPK13 p Y182" 61548500 69358000 59607000 97438000 NA 104461226.5 161180000 156176000 92572825 107356072 61271000 14442370 123084000 78584000 133317500 196918500 186514000 217820000 -"INPPL1" "Y" "671" "Phosphorylation (STY)" "INPPL1 p Y671" NA NA NA 328100 417890 418735 1821900 1655950 1846000 NA NA NA NA NA NA NA NA NA -"INPPL1" "Y" "886" "Phosphorylation (STY)" "INPPL1 p Y886" 1629100 1183350 929315 44201000 43886500 67131500 31410500 31932500 28812500 3398250 2969200 2190700 677830 2316100 2745200 6352500 1836640 3518900 -"INPPL1" "Y" "1162" "Phosphorylation (STY)" "INPPL1 p Y1162" 989920 1290700 926570 4464200 4820500 6096600 2496200 3795900 3185200 2755950 652440 2358600 2549500 2655800 3582200 3706600 4444800 4886200 -"INPPL1" "Y" "986" "Phosphorylation (STY)" "INPPL1 p Y986" NA NA NA 2416100 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"INPPL1" "Y" "1135" "Phosphorylation (STY)" "INPPL1 p Y1135" 414875 352640 NA 1575700 1398565 2623800 1331570 3409700 658480 NA NA 23303 235080 NA NA NA 599440 540160 -"TPD52L2" "Y" "106" "Phosphorylation (STY)" "TPD52L2 p Y106" 216535 252260 NA 176370 156350 383470 591500 587870 NA 312110 202881.5 199698.5 328780 181803.5 463220 396575 241376 210700 -"EPB41L2" "Y" "623" "Phosphorylation (STY)" "EPB41L2 p Y623" 1137960 1179140 790070 2115500 1174450 1034900 1847000 855063 1251840 NA 7677000 8803900 6348450 35439 4670800 NA 8396150 6682950 -"ATP8B1" "Y" "1217" "Phosphorylation (STY)" "ATP8B1 p Y1217" 462080 1147340 910570 568045 882900 50175 531425 758280 874205 1367415 2044500 2469900 950270 1999250 459315 290105 863505 1363500 -"SPRY2" "Y" "55" "Phosphorylation (STY)" "SPRY2 p Y55" 135440 122040 181910 191625 96993 64894 214640 113095 87194 NA NA NA NA NA NA NA NA NA -"SPRY1" "Y" "89" "Phosphorylation (STY)" "SPRY1 p Y89" 457200 274430 462550 728825 523280 343710 2247400 NA 362800 NA 75569.5 118550 168520 95363 NA NA 195150 203360 -"ENSA;ARPP19" "Y" "64;59" "Phosphorylation (STY)" "ENSA p Y64; ARPP19 p Y59" 392890 NA NA 1604150 2259700 1448350 851030 1312000 1593050 1322850 572200 1304370 110185.5 121290 127472.5 880845 1459390 1083690 -"ENSA;ARPP19" "Y" "70;65" "Phosphorylation (STY)" "ENSA p Y70; ARPP19 p Y65" NA NA NA NA NA 1714800 NA NA NA NA NA NA NA NA NA NA NA NA -"NUDT21" "Y" "40" "Phosphorylation (STY)" "NUDT21 p Y40" 771935 909730 850620 445935 375050 759940 219000 328490 316490 NA NA NA NA NA NA NA NA NA -"SYNCRIP" "Y" "373" "Phosphorylation (STY)" "SYNCRIP p Y373" 2246100 NA NA 6706100 11922000 8200400 6549900 NA 3366800 23480 NA 53811 95222 NA 32302 NA NA NA -"SYNCRIP" "Y" "205" "Phosphorylation (STY)" "SYNCRIP p Y205" 513320 240610 169380 229965 123930 257050 160490 194280 NA NA NA NA NA NA NA NA NA NA -"BUB1B" "Y" "404" "Phosphorylation (STY)" "BUB1B p Y404" NA NA 24318 28481 23785 26586.5 NA NA NA 88278 70139 52364 34275 29316.5 35601 576250 58686.5 67465 -"CTNND1" "Y" "257" "Phosphorylation (STY)" "CTNND1 p Y257" 12504500 12291050 10347200 15568000 12427300 13940850 19049500 19541000 15260850 21966650 10999800 14490650 21549000 9234550 15991850 17084500 15260925 15418300 -"CTNND1" "Y" "280" "Phosphorylation (STY)" "CTNND1 p Y280" 697420 730715 529740 722490 578920 NA NA NA 62883 NA NA NA NA NA NA 2724200 1417000 1459500 -"CTNND1" "Y" "217" "Phosphorylation (STY)" "CTNND1 p Y217" 581892 NA 517985 NA NA 405550 960490 308340 NA 137745 NA 541480 NA 460460 225630 2195100 223270 202633.5 -"CTNND1" "Y" "228" "Phosphorylation (STY)" "CTNND1 p Y228" 11997795 10971850 8483100 22596500 13291200 14669050 35985000 15621674 12664000 39713450 17789250 51359000 22615150 28051000 23478300 20729300 17283000 27093000 -"CTNND1" "Y" "213" "Phosphorylation (STY)" "CTNND1 p Y213" NA NA NA 207660 169540 495385 335825 328280 196539 101966.5 62761.5 122840 NA NA 191180 NA 115591 80760 -"CTNND1" "Y" "904" "Phosphorylation (STY)" "CTNND1 p Y904" 25996000 25351500 20526950 38106000 31476500 35084500 60038000 40306277.5 47911000 20754150 17998350 20125600 14053250 11054350 16362800 16763400 16722900 23138000 -"CTNND1" "Y" "335" "Phosphorylation (STY)" "CTNND1 p Y335" NA 306440 359830 NA 209185 208335 NA 164090 259645 364270 237240 156710 242195 531440 393930 3777400 214940 257430 -"CTNND1" "Y" "248" "Phosphorylation (STY)" "CTNND1 p Y248" 1370500 1497950 971880 2479750 2746050 2537950 2704750 4735400 3976500 1041685 1543100 1294200 2144900 867265 997740 1318945 894360 1350000 -"TOM1" "Y" "386" "Phosphorylation (STY)" "TOM1 p Y386" 332065 578310 195930 330020 395080 393110 363930 211210 249950 207434 NA 116959.5 170840 124522 133149 82034 97738 111650 -"LILRA1;LILRA4;LILRB2;LILRB1" "Y" "291;289;290;291" "Phosphorylation (STY)" "LILRA1 p Y291; LILRA4 p Y289; LILRB2 p Y290; LILRB1 p Y291" NA NA NA NA NA NA 61593 57377 55923 4745300 3243200 3716050 3279000 5096300 3308300 1668000 4630950 5161250 -"FAM20B" "Y" "138" "Phosphorylation (STY)" "FAM20B p Y138" 785435 1024730 827255 953085 793065 1292000 634200 800165 754755 NA 701600 731180 823740 520630 1318700 399745 921250 473250 -"FAM20B" "Y" "141" "Phosphorylation (STY)" "FAM20B p Y141" 785435 498960 827255 953085 793065 553100 634200 800165 754755 NA 701600 731180 NA 520630 1318700 399745 921250 473250 -"WDR1" "Y" "238" "Phosphorylation (STY)" "WDR1 p Y238" 3922600 3059550 3494550 2540250 4109400 3381600 1347200 2168400 1789500 299890 162470 93429.5 348140 174440 NA NA 136130 135940 -"ROCK2" "Y" "722" "Phosphorylation (STY)" "ROCK2 p Y722" 698890 1226790 642795 1455400 1279850 1667830 714630 802275 801860 1059200 NA NA NA 713290 469860 423965 526070 205020 -"FLNB" "Y" "2502" "Phosphorylation (STY)" "FLNB p Y2502" 503845 632750 523600 1474250 1363240 1316710 969055 1025615 896615 2742650 1527445 1569995 1242900 1316570 2678250 2131555 1825540 1731600 -"SPAG7" "Y" "189" "Phosphorylation (STY)" "SPAG7 p Y189" 68538 187036 NA 280270 506570 172500 270700 354350 118650 380550.5 372696.5 303210 388455 228064.5 273460 50812 594270 326397.5 -"TIPRL" "Y" "209" "Phosphorylation (STY)" "TIPRL p Y209" 2155653 4881400 4438800 2213245 4602550 4050150 4838850 4774350 4620300 1972045 2383250 2216150 2762950 1309525 1573330 1469390 1514765 1762650 -"BCAR3" "Y" "266" "Phosphorylation (STY)" "BCAR3 p Y266" 567115 685945 627905 362860 323475 255980 500975 471090 682165 2214500 3872700 3810550 2275150 695050 2112450 2263080 2533580 4360600 -"BCAR3" "Y" "117" "Phosphorylation (STY)" "BCAR3 p Y117" NA 169920 118001 107945 152695.5 140250 54547 100062.5 80422 1018970 418930 463510 475215 537125 717470 839625 883850 1156100 -"BCAR3" "Y" "212" "Phosphorylation (STY)" "BCAR3 p Y212" 1992700 2221500 2566500 3274250 2927100 4207100 4795150 2299315 4974500 NA NA NA NA NA 781145 1723247.5 NA NA -"BCAR3" "Y" "42" "Phosphorylation (STY)" "BCAR3 p Y42" 354680 206216.5 210790 199610 NA 169100 205950 NA NA NA 998390 NA 226440 491410 1407600 NA 77614 1630200 -"FLOT1" "Y" "203" "Phosphorylation (STY)" "FLOT1 p Y203" 334170 329385 180600 382920 320520 261500 539780 376330 375270 395180 260240 336695 239920 419090 308095 653230 454850 350640 -"CPD" "Y" "1344" "Phosphorylation (STY)" "CPD p Y1344" 386450 230010 200060 1030885 1313300 1856600 737060 748390 708550 NA NA 355310 NA NA NA NA NA NA -"CDKL5" "Y" "171" "Phosphorylation (STY)" "CDKL5 p Y171" NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1339900 NA NA NA -"SCEL" "Y" "58" "Phosphorylation (STY)" "SCEL p Y58" NA 273470 NA 6719500 6427000 5760600 6425700 4696150 5475600 NA NA NA NA NA NA NA NA 123420 -"SCEL" "Y" "295" "Phosphorylation (STY)" "SCEL p Y295" 589985 579150 439845 2071350 1928650 1355400 505175 736640 564195 15176 NA NA NA NA NA NA NA NA -"SPDEF" "Y" "329" "Phosphorylation (STY)" "SPDEF p Y329" 96264 127475 203910 393335 507670 596965 522170 819820 643475 NA NA NA NA NA NA 40643 NA NA -"MPZL1" "Y" "263" "Phosphorylation (STY)" "MPZL1 p Y263" 395445 424495 142120 1034425 846020 752730 67803 105586.5 82072 3592300 1158915 60667.5 1055700 92840 943384 1649500 1291600 1079880 -"CLDN7" "Y" "210" "Phosphorylation (STY)" "CLDN7 p Y210" 4630100 4966150 2952700 5464850 2785450 3776285.5 4411200 3228000 3904150 5884800 NA NA 988650 1080500 1100530 2190650 1553015 1762350 -"ADGRL2" "Y" "1372" "Phosphorylation (STY)" "ADGRL2 p Y1372" 138500 213030 NA NA NA 168840 171875 156900 170820 387360 198500 341890 483705 419465 511610 326900 415275 501525 -"ADGRL2" "Y" "1406" "Phosphorylation (STY)" "ADGRL2 p Y1406" 406090 368895 256520 412220 190230 237695 552850 544680 442975 1044215 682355 884120 29536 NA 1195200 1626900 NA 751450 -"SNAP29" "Y" "160" "Phosphorylation (STY)" "SNAP29 p Y160" 519140 447850 202396 718230 372110 727565 430335 393670 510100 NA 100430 135074.5 NA NA 23687 46058 74884 NA -"PTBP3" "Y" "127" "Phosphorylation (STY)" "PTBP3 p Y127" 1796200 1797550 1255275 2877300 2878200 2971450 2972700 2411100 2345700 673680 263410 331495 942320 259520 685090 522415 767440 469800 -"CLDN1" "Y" "210" "Phosphorylation (STY)" "CLDN1 p Y210" 1183500 1486500 1670450 1785600 1737300 2741000 2174650 1489250 1147300 4783100 4371600 6596100 2831350 2089350 2836600 1711340 1310162 2769500 -"LDHA" "Y" "239" "Phosphorylation (STY)" "LDHA p Y239" 13018000 19835500 14172850 9971500 13406000 15265000 11701300 14397600 9682450 2342950 1597925 1747520 590260 1364280 2060180 740130 1703810 1327440 -"ABL1;ABL2" "Y" "393;439" "Phosphorylation (STY)" "ABL1 p Y393; ABL2 p Y439" 1127770 1304395 1042460 1432900 1994550 2797700 1339000 1603200 1806500 NA NA NA NA NA NA 496390 144630 131080 -"ABL1" "Y" "185" "Phosphorylation (STY)" "ABL1 p Y185" 791650 1129910 1097000 723340 1284550 1202110 1047135 1106040 1493100 NA NA NA 19296 NA NA NA NA NA -"EGFR" "Y" "869" "Phosphorylation (STY)" "EGFR p Y869" 2900950 2306905 2085770 2040650 1356765 1399220 2521400 2361100 2255700 13853100 9673500 11589450 5876000 2954850 3220550 14383000 7856200 9618000 -"EGFR" "Y" "1172" "Phosphorylation (STY)" "EGFR p Y1172" 5648400 5898250 4240350 2747100 NA 2797800 2733100 2642400 2851900 64917000 71793500 66072500 1832400 1245620 1869918.5 110126500 53668000 69450000 -"EGFR" "Y" "1197" "Phosphorylation (STY)" "EGFR p Y1197" 21917500 20419500 16105850 12293500 9619400 7554690 16474000 18492500 17185000 129061500 108562500 122866000 14424500 7463300 15923900 107387000 126622000 99214500 -"EGFR" "Y" "1110" "Phosphorylation (STY)" "EGFR p Y1110" 3700900 1932700 2674450 6841400 5469200 5800500 3315500 2467500 4779000 149657000 76070500 70830000 6340100 5288500 7006600 56052000 62838500 72386500 -"EGFR;ERBB4;ERBB2" "Y" "727;733;735" "Phosphorylation (STY)" "EGFR p Y727; ERBB4 p Y733; ERBB2 p Y735" NA NA NA NA NA NA NA NA NA 3241450 2345850 2741000 1688605 1601305 2376300 1490200 2080150 2370100 -"EGFR" "Y" "1092" "Phosphorylation (STY)" "EGFR p Y1092" 72357 NA NA 527520 NA NA 479790 523500 907540 18439500 10559000 20768000 144725 951350 680330 7707800 7416906 9274450 -"PGK1" "Y" "196" "Phosphorylation (STY)" "PGK1 p Y196" 1782267 1227008.5 2968400 2230000 1948650 2446900 2223600 3426050 2576000 792310 NA 52718 NA NA NA 32997 361930 159080 -"MBP" "Y" "148" "Phosphorylation (STY)" "MBP p Y148" NA NA NA NA NA NA NA NA NA 563650 NA NA 637025 NA 474580 NA 719750 NA -"ALDOA;ALDOC" "Y" "204;204" "Phosphorylation (STY)" "ALDOA p Y204; ALDOC p Y204" 3867700 3605300 3323100 2535500 2746950 3320750 4256700 3435300 2923700 422805 245705 217420 426990 264705 245300 532000 NA 127620 -"ALDOA" "Y" "3" "Phosphorylation (STY)" "ALDOA p Y3" 351135 1006100 353135.5 NA NA 558705 514390 392364.5 728480 746570 448775 772750 96521 178790 149894.5 555975 92796 92845 -"ALDOA" "Y" "5" "Phosphorylation (STY)" "ALDOA p Y5" 2521250 3012250 2813500 2177050 1742750 2318600 2091000 2968900 2103500 NA NA NA 700960 NA 303060 NA 935620 317580 -"ERBB2" "Y" "877" "Phosphorylation (STY)" "ERBB2 p Y877" 3234600 6646400 1981700 3979900 1657900 739720 5779000 2267300 3581900 659900 NA 22705331 99738000 55217000 36469000 45581000 NA 45292500 -"CAPNS1" "Y" "87" "Phosphorylation (STY)" "CAPNS1 p Y87" 256830 NA NA NA 236020 329390 731080 NA 207120 NA NA NA NA NA NA NA NA NA -"ATP1A1" "Y" "260" "Phosphorylation (STY)" "ATP1A1 p Y260" NA 10020200 8861050 NA NA 22298500 4883900 7181200 NA 5506850 3809674 3813287.5 12596000 89482 2042165 NA 4506100 4258300 -"ATP1A1" "Y" "55" "Phosphorylation (STY)" "ATP1A1 p Y55" 18538500 37668500 29438500 23910000 24992500 42327000 31359000 36238000 29395500 22534000 34670500 32729000 35669500 17911500 20916000 12465400 14611000 19133500 -"SLC25A5" "Y" "191" "Phosphorylation (STY)" "SLC25A5 p Y191" 906790 NA NA NA NA NA NA 486700 NA NA NA NA NA NA NA NA NA NA -"SLC25A5" "Y" "195" "Phosphorylation (STY)" "SLC25A5 p Y195" 1072100 902840 885205 NA NA 776920 612350 NA 582030 NA NA NA NA NA NA NA NA NA -"EIF2S1" "Y" "147" "Phosphorylation (STY)" "EIF2S1 p Y147" NA NA NA NA NA 3210100 NA NA NA NA NA NA NA NA NA NA NA NA -"EIF2S1" "Y" "150" "Phosphorylation (STY)" "EIF2S1 p Y150" 112340 NA NA 2823500 NA 3210100 NA NA NA NA NA NA NA NA NA NA NA NA -"RPLP0;RPLP0P6" "Y" "24;24" "Phosphorylation (STY)" "RPLP0 p Y24; RPLP0P6 p Y24" 1711350 2430600 2363200 936755 1537250 1590150 1316105 834566.5 1425600 640530 482070 318415 395370 190660 579880 384390 410635 347850 -"ITGB1" "Y" "783" "Phosphorylation (STY)" "ITGB1 p Y783" 873640 1122285 864880 123960 801375 1236900 649070 605090 NA NA NA NA 3236400 NA NA NA 8265.6 2828400 -"KRT18" "Y" "94" "Phosphorylation (STY)" "KRT18 p Y94" 2237100 3263050 2558650 2251250 2239400 2753450 2582650 2276500 2420050 210640 NA NA 77542 NA 207060 272785 160090 29961 -"KRT18" "Y" "36" "Phosphorylation (STY)" "KRT18 p Y36" 8379950 8142300 8334600 15691000 14997800 13738350 11626800 12496750 9349300 8463550 5698250 6619600 6176250 8955100 8318500 6236900 6293800 8047900 -"KRT18" "Y" "24" "Phosphorylation (STY)" "KRT18 p Y24" NA 6695100 NA NA NA NA NA NA 7250400 5856100 NA NA NA NA NA NA NA 5123600 -"KRT18" "Y" "13" "Phosphorylation (STY)" "KRT18 p Y13" 35609500 41029000 33318500 40445500 39756000 37502000 45167000 37921000 40556500 4693600 1380320 970400 4985250 723045 5833850 5615100 7518800 1939500 -"INSR;IGF1R" "Y" "1185;1161" "Phosphorylation (STY)" "INSR p Y1185; IGF1R p Y1161" NA NA NA NA NA NA NA NA NA NA NA NA 231049 876420 1325400 NA NA NA -"INSR;IGF1R" "Y" "1189;1165" "Phosphorylation (STY)" "INSR p Y1189; IGF1R p Y1165" NA NA NA NA NA NA NA NA NA NA NA NA 231049 NA 1325400 NA NA NA -"LCK;SRC;FYN;YES1" "Y" "394;419;420;426" "Phosphorylation (STY)" "LCK p Y394; SRC p Y419; FYN p Y420; YES1 p Y426" 129039000 44977255 52103.5 110630000 34293950 93617500 133754500 145589500 75879690 184940000 111327683 179027500 85438870 109001500 172596000 128622030 201032000 186360000 -"LCK" "Y" "192" "Phosphorylation (STY)" "LCK p Y192" 9928550 11364000 9333400 6955300 8407950 9347150 8675100 7437900 6992650 NA NA NA NA NA NA NA NA NA -"FYN" "Y" "28" "Phosphorylation (STY)" "FYN p Y28" NA NA NA NA NA NA NA NA NA 178280 166270 238520 337885 435640 370120 443905 548645 537115 -"FYN;FGR;YES1" "Y" "185;180;194" "Phosphorylation (STY)" "FYN p Y185; FGR p Y180; YES1 p Y194" 650598.5 1216450 537425 904965 808090 1161000 1073245 1521200 NA 4937000 3746900 2859100 4098900 1656300 4756800 3498700 4458600 NA -"FYN;YES1" "Y" "213;222" "Phosphorylation (STY)" "FYN p Y213; YES1 p Y222" 130042 188795 56667 150800 NA 188956 NA NA NA 896250 553260 534740 594050 242870 716775 937520 695035 534875 -"FYN;YES1" "Y" "214;223" "Phosphorylation (STY)" "FYN p Y214; YES1 p Y223" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1457000 NA NA -"CDK1;CDK2;CDK3" "Y" "15;15;15" "Phosphorylation (STY)" "CDK1 p Y15; CDK2 p Y15; CDK3 p Y15" 342835000 648215000 482290000 407780000 481880000 492480000 400720000 345825000 306915000 2392400000 2160300000 2476850000 1930800000 2126750000 1093685000 1566465000 2337550000 2776300000 -"CDK1;CDK2;CDK3" "Y" "19;19;19" "Phosphorylation (STY)" "CDK1 p Y19; CDK2 p Y19; CDK3 p Y19" 753065 504455 263045 NA 63375 86788 454405 261280 299510 484120 1188100 2028470 968470 820735 980380 358300 1095465 931510 -"ENO1;ENO2;ENO3" "Y" "44;44;44" "Phosphorylation (STY)" "ENO1 p Y44; ENO2 p Y44; ENO3 p Y44" 2971400 3153650 2832450 1377750 2574100 2818500 NA 1419600 NA NA 756705 NA 578160 NA 513230 NA 650680 NA -"ENO1" "Y" "189" "Phosphorylation (STY)" "ENO1 p Y189" 2294900 1215800 853430 883030 764525 886470 1208505 798060 897450 NA NA NA NA NA NA NA NA NA -"ENO1" "Y" "287" "Phosphorylation (STY)" "ENO1 p Y287" 3632200 4975100 4583500 1353050 1233400 1358700 644805 748385 558785 80963 30483 43816.5 36689 60321 34111 NA 35618 37570.5 -"LDHB" "Y" "240" "Phosphorylation (STY)" "LDHB p Y240" 15874000 25642500 19759000 13981000 17963000 23793000 13105650 11918550 12605550 NA NA 546310 2034400 NA 1476740 1088635 1761800 NA -"ANXA2;ANXA2P2" "Y" "30;30" "Phosphorylation (STY)" "ANXA2 p Y30; ANXA2P2 p Y30" 703930 1660100 1230520 2879250 1818950 3347600 2686500 2371900 2076900 4772800 2305074.5 5345000 4109550 5310300 7667500 6292400 NA 7494500 -"ANXA2;ANXA2P2" "Y" "24;24" "Phosphorylation (STY)" "ANXA2 p Y24; ANXA2P2 p Y24" 27620000 47401000 26681000 47538000 NA 41069500 29274000 27591500 22556500 114199000 89336500 92837000 146020000 59551500 91548500 58205500 86134500 86059000 -"ANXA2;ANXA2P2" "Y" "316;316" "Phosphorylation (STY)" "ANXA2 p Y316; ANXA2P2 p Y316" NA 1734050 1085975 1142100 1247950 1081605 1455100 1552800 NA 178607 157320 162545 187662 143470 54541 NA NA NA -"ANXA2;ANXA2P2" "Y" "317;317" "Phosphorylation (STY)" "ANXA2 p Y317; ANXA2P2 p Y317" 526720 791745 NA 364290 567080 677700 724580 NA NA NA NA NA NA NA NA NA NA NA -"ANXA2;ANXA2P2" "Y" "238;238" "Phosphorylation (STY)" "ANXA2 p Y238; ANXA2P2 p Y238" 321100 487265 522240 373185 367270 246297 141811.5 369245 341005 1092245 485980 379495 624025 819275 1178500 506780 867070 871920 -"PFN1;NA" "Y" "129;129" "Phosphorylation (STY)" "PFN1 p Y129" 11499200 10611150 8993000 7405700 9863350 11598350 9915500 10737700 8925250 568135 534130 681450 601785 504500 704490 441765 331120 593175 -"HSP90AA1" "Y" "627" "Phosphorylation (STY)" "HSP90AA1 p Y627" 104710.5 109984.5 75154 277330 192530 304220 245200 230365 201033 156220 410525 332570 410620 299370 440350 273645 456680 351690 -"HSP90AA1;HSP90AA5P" "Y" "492;177" "Phosphorylation (STY)" "HSP90AA1 p Y492; HSP90AA5P p Y177" 3183950 3272700 2705250 1956800 1718700 4261600 2576700 2535600 1077100 736295 555515 1111500 515342.5 802370 998350 NA 297060 868445 -"HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB3P;HSP90AB2P" "Y" "61;61;56;56;56" "Phosphorylation (STY)" "HSP90AA1 p Y61; HSP90AA2P p Y61; HSP90AB1 p Y56; HSP90AB3P p Y56; HSP90AB2P p Y56" 1437055 1651270 1477200 1602950 1160200 3480600 1891840 1813985 2350800 2086690 1619810 1637315 2510500 2049200 2466145 160970 3187100 883420 -"HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P" "Y" "284;283;276;198" "Phosphorylation (STY)" "HSP90AA1 p Y284; HSP90AA2P p Y283; HSP90AB1 p Y276; HSP90AB2P p Y198" 1325525 1646450 1280725 1202300 2089700 1954250 1550665 2241800 1497155 1527415 1301945 1143285 589610 680155 1135035 1257685 1484717 3040100 -"LYN" "Y" "194" "Phosphorylation (STY)" "LYN p Y194" 787895 957875 702155 666115 521650 600600 675760 640900 658970 2951000 1611600 1270900 44507 NA 89308 88492 NA NA -"LYN" "Y" "32" "Phosphorylation (STY)" "LYN p Y32" 982210 1013225 404740 NA NA 896480 1155300 1392785 912995 1553000 1112715 1146135 1235100 581660 1025960 1035810 1145085 1855600 -"LYN;HCK" "Y" "397;411" "Phosphorylation (STY)" "LYN p Y397; HCK p Y411" 21505000 64106000 14280860 36311000 44574000 41598500 52703500 48433500 56205000 85418000 83301000 94501000 23162270 76473500 100016000 87613000 103649500 101998500 -"HSP90AB1;HSP90AB2P" "Y" "484;260" "Phosphorylation (STY)" "HSP90AB1 p Y484; HSP90AB2P p Y260" 3846300 3866350 3074300 1861500 2526850 2598750 2777650 2389500 2636950 124520 NA 310110 239207.5 172821.5 NA 82104 252965 247565 -"MET" "Y" "1234" "Phosphorylation (STY)" "MET p Y1234" NA NA NA 14507810 16019500 18475000 19495000 10208360 12550750 12926000 10813150 12448000 17562000 7178426.5 14403000 3650100 5675950 10179000 -"SNRNP70" "Y" "126" "Phosphorylation (STY)" "SNRNP70 p Y126" 1333990 1289868 2406900 836670 678760 1243510 1230590 2828900 1523300 101580 18855 272860 244435.5 112770 350975 366765 273516 342410 -"RPSA" "Y" "156" "Phosphorylation (STY)" "RPSA p Y156" 1188120 1627650 1479850 981800 1382300 1094745 1001085 1177370 1032800 NA NA NA NA 22078 26837 NA NA 63681.5 -"HNRNPA1" "Y" "366" "Phosphorylation (STY)" "HNRNPA1 p Y366" 321810 317800 1244420 1104300 2647300 2841800 747825 628175 285180 134900 94680 472185 82065 457035 200830 NA 122750 NA -"HNRNPA1" "Y" "341" "Phosphorylation (STY)" "HNRNPA1 p Y341" 4265050 7916500 3648950 7314350 8410800 7335250 3779400 7376900 3319000 NA NA NA NA NA NA 67238 NA NA -"HNRNPA1" "Y" "347" "Phosphorylation (STY)" "HNRNPA1 p Y347" NA NA NA 11866000 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CALM3;CALM2;CALM1" "Y" "100;100;100" "Phosphorylation (STY)" "CALM3 p Y100; CALM2 p Y100; CALM1 p Y100" 5662200 71571 7653200 6730500 10387000 10809000 103730 3125410 10585850 1482199.5 6002767 14855000 78399 10456000 10397000 1771688 11265850 NA -"ESD" "Y" "202" "Phosphorylation (STY)" "ESD p Y202" NA 717740 677250 886725 1108365 1213200 926060 482675 280080 305780 373380 NA NA NA 198360 992110 408580 NA -"EPB41" "Y" "660" "Phosphorylation (STY)" "EPB41 p Y660" 1985500 1891950 1591250 3350500 1846650 2227900 3322000 2186900 3591900 877515 993785 1812000 825460 798335 942590 1118955 1086100 775650 -"UMPS" "Y" "37" "Phosphorylation (STY)" "UMPS p Y37" 1207850 1380120 1195450 407535 531050 628620 745920 828320 1002785 102146 50727 56077.5 54780.5 54344 80878 93855 73787.5 73103 -"BCR" "Y" "177" "Phosphorylation (STY)" "BCR p Y177" 422490 526580 790990 32392000 10174850 3431600 803830 1149500 NA 899560 485980 494600 538130 222190 226661 NA NA 785390 -"G6PD" "Y" "202" "Phosphorylation (STY)" "G6PD p Y202" 1633050 2565700 2055200 1226300 1871900 2145700 1625700 2023450 2059950 768540 446340 484610 466370 268860 678625 520405 665975 513985 -"G6PD" "Y" "503" "Phosphorylation (STY)" "G6PD p Y503" 5952100 9831200 6983300 8455050 7083150 6524100 9677700 NA 7315350 7246350 4678000 2829600 NA 3009250 7535250 9723700 5671050 2923600 -"G6PD" "Y" "507" "Phosphorylation (STY)" "G6PD p Y507" 1465240 1769100 1525320 1133450 707080 1601200 1415435 2535700 872133.5 222110 27105 NA 2037895 NA 5149900 4148000 NA 2524200 -"G6PD" "Y" "401" "Phosphorylation (STY)" "G6PD p Y401" 46024500 62324500 43209000 38832000 52218500 49604500 45182000 44809000 40933500 6203237.5 3750367 5360700 11765000 3872900 9795900 9097500 7804250 3216200 -"PABPC1;PABPC4" "Y" "54;54" "Phosphorylation (STY)" "PABPC1 p Y54; PABPC4 p Y54" 2090200 2457300 1610600 1321900 1649600 1966600 574830 650130 NA NA NA NA NA NA NA NA NA NA -"ACTN1" "Y" "193" "Phosphorylation (STY)" "ACTN1 p Y193" NA NA NA NA NA 204700 NA NA NA 769400 NA NA 1008900 240360 616875 462480 310120 580475 -"PKM" "Y" "83" "Phosphorylation (STY)" "PKM p Y83" 4339950 6686000 5966200 3600050 2940200 2715100 4064550 3456850 NA 312860 112830 179760 535020 351520 763515 1078000 321230 571770 -"PKM" "Y" "105" "Phosphorylation (STY)" "PKM p Y105" 2994900 2633500 4933800 1827750 36366 18599 2288200 80289 81216 78251 165535 107849 63534 102545.5 80093 118455 99592.5 40675 -"SNRPN;SNRPB" "Y" "15;15" "Phosphorylation (STY)" "SNRPN p Y15; SNRPB p Y15" NA NA 2104500 1478200 1685700 2291850 1910150 2348400 2091350 NA NA NA NA NA NA NA NA NA -"GLUL" "Y" "185" "Phosphorylation (STY)" "GLUL p Y185" 5231000 6199300 4559150 3517000 3681800 5352600 7652400 7167200 6911050 NA NA NA NA NA NA 12940 NA NA -"GLUL" "Y" "180" "Phosphorylation (STY)" "GLUL p Y180" 463650 509360 488305 362630 606840 782280 490620 773990 857935 NA NA NA NA NA NA NA 127410 NA -"AKR1B1" "Y" "49" "Phosphorylation (STY)" "AKR1B1 p Y49" NA NA NA NA NA NA NA NA NA 848125 121520 610759 184010 569180 981140 1945100 96311 244820 -"AKR1B1" "Y" "190" "Phosphorylation (STY)" "AKR1B1 p Y190" NA NA NA NA NA NA NA NA NA 216820 1208575 628740 1321465 2176200 3157900 NA NA 3163100 -"EZR;MSN;RDX" "Y" "270;270;270" "Phosphorylation (STY)" "EZR p Y270; MSN p Y270; RDX p Y270" 271350 270110 257065 145250 194170 210655 176145 219255 187295 230360 106802 143340 NA NA NA NA NA NA -"VAV1" "Y" "541" "Phosphorylation (STY)" "VAV1 p Y541" 134900 124414.5 135113.5 197185 200110 401940 1223225 1231625 1149375 NA NA NA NA NA NA NA NA NA -"VAV1" "Y" "423" "Phosphorylation (STY)" "VAV1 p Y423" NA NA NA 256970 345230 347600 NA 1124600 NA NA NA NA NA NA NA NA NA NA -"NQO1" "Y" "20" "Phosphorylation (STY)" "NQO1 p Y20" NA 1257785 1260000 1047215 906170 1303065 1633550 1713100 1305720 NA NA NA 103910.5 NA 82742 48900 118375.5 62652 -"DSP" "Y" "56" "Phosphorylation (STY)" "DSP p Y56" 360555 118320 281815 NA 219870 534905 637515 527965 201070 NA 347720 256870 518440 172882 84507 141323.5 236932.5 300492 -"DSP" "Y" "28" "Phosphorylation (STY)" "DSP p Y28" 2200800 1038820 633005 1019310 1135650 1296420 1041780 2539500 1467070 291337 311647 209775 320010 144630 206915 NA NA 161850 -"MUC1" "Y" "1203" "Phosphorylation (STY)" "MUC1 p Y1203" 3108325 3885600 1402155 5583600 4587550 4359300 3935600 820650 3400950 NA NA NA NA NA NA NA NA NA -"MUC1" "Y" "1212" "Phosphorylation (STY)" "MUC1 p Y1212" 877175 NA 233710 812685 NA 456790 348290 820650 438920 NA NA NA NA NA NA NA NA NA -"MUC1" "Y" "1229" "Phosphorylation (STY)" "MUC1 p Y1229" 26775000 34331500 25201000 39959000 35949500 34023000 47155500 53219000 39798000 NA NA NA NA NA NA NA NA NA -"ITGB4" "Y" "1510" "Phosphorylation (STY)" "ITGB4 p Y1510" 141320 427730 NA 731220 1646600 1614500 907130 916690 749865 1905685 1075185 2442700 2866600 1032300 1860100 2135900 1636210 1966800 -"CBR1" "Y" "194" "Phosphorylation (STY)" "CBR1 p Y194" 473210 1073965 934325 445650 746535 690080 723890 719065 826525 NA NA NA NA NA NA NA NA NA -"FER" "Y" "714" "Phosphorylation (STY)" "FER p Y714" 2327500 2036300 1249415 1558900 NA 2312700 2821400 1027900 2878000 1372690 NA 2670400 2202800 1978200 NA NA NA 2029700 -"GOT1" "Y" "381" "Phosphorylation (STY)" "GOT1 p Y381" 730705 1108450 679790 521790 424845 856765 729555 782180 751760 NA NA NA NA NA NA NA NA NA -"CEBPB" "Y" "139" "Phosphorylation (STY)" "CEBPB p Y139" NA NA NA NA NA 320035 NA NA NA NA NA 1114300 60026 NA 849900 4272200 NA 887850 -"DDX5" "Y" "59" "Phosphorylation (STY)" "DDX5 p Y59" NA NA NA NA NA NA 522060 NA NA NA NA NA NA NA NA NA NA NA -"DDX5;DDX17" "Y" "202;279" "Phosphorylation (STY)" "DDX5 p Y202; DDX17 p Y279" 2403900 3666300 2900100 3062800 3851750 3721850 7857200 8641150 6167200 510390 401755 356810 NA NA 546495 327325 223210 575520 -"DDX5" "Y" "442" "Phosphorylation (STY)" "DDX5 p Y442" NA NA NA NA NA NA 925985 917385 1080800 NA NA NA NA NA NA NA NA NA -"RPL35A" "Y" "34" "Phosphorylation (STY)" "RPL35A p Y34" 461000 NA NA 521085 388615 613180 NA 44428 64227 1426785 1214340 NA 1435450 1063800 1764150 NA 1098900 1413400 -"VCL" "Y" "822" "Phosphorylation (STY)" "VCL p Y822" 2233550 588775 608065 304568.5 497060 534932 NA NA NA NA NA NA NA NA NA NA NA NA -"PTPRA" "Y" "798" "Phosphorylation (STY)" "PTPRA p Y798" 6148200 8446750 7370050 3182100 3530000 5196250 4035900 3375650 3005350 9978850 6837650 8585900 4509800 12078000 9056200 23310750 6670300 9770950 -"PGAM1;PGAM2;PGAM4" "Y" "92;92;92" "Phosphorylation (STY)" "PGAM1 p Y92; PGAM2 p Y92; PGAM4 p Y92" 11331150 11262550 9353150 7819950 10297400 10613950 9579800 8828300 8643300 7534450 6572900 7681750 7760300 6864250 9143800 6724700 5682200 7066200 -"SDC1" "Y" "309" "Phosphorylation (STY)" "SDC1 p Y309" NA 712090 585870 709500 289650 911835 2193155 512520 608360 NA NA NA NA NA NA NA NA NA -"PLCG1" "Y" "428" "Phosphorylation (STY)" "PLCG1 p Y428" 1555050 1625600 1098555 999290 1058160 1160400 1048100 1609500 1352900 NA NA NA NA NA NA NA NA 14095 -"RASA1" "Y" "460" "Phosphorylation (STY)" "RASA1 p Y460" 1265945 1268575 679603.5 2510850 1831050 3241000 3984650 3638200 3409050 2377050 3725800 5107600 3507500 3201600 1659894.5 NA 3224300 3054950 -"ENDOU" "Y" "394" "Phosphorylation (STY)" "ENDOU p Y394" NA NA NA NA NA NA NA NA NA 14185000 35624000 54463000 25778000 41435000 32727000 NA NA NA -"EPHA1" "Y" "781" "Phosphorylation (STY)" "EPHA1 p Y781" 1027370 713585 933970 569155 490645 562080 809620 1131780 763365 5705550 65007 NA 97102 4503700 3873600 18750000 1978700 NA -"ERBB3" "Y" "1307" "Phosphorylation (STY)" "ERBB3 p Y1307" 603620 NA 1055665 2525200 3319700 1402900 NA 2460400 NA NA NA NA NA NA NA 639230 NA NA -"ERBB3" "Y" "1328" "Phosphorylation (STY)" "ERBB3 p Y1328" NA NA NA NA NA NA NA 209160 NA 3093400 5259850 6053700 1322900 402670 NA 4815500 9924900 2830800 -"TGM2" "Y" "369" "Phosphorylation (STY)" "TGM2 p Y369" NA NA NA NA NA NA NA NA NA 1562045 1232800 1686060 77954 1011705 1475415 1945625 537610 870180 -"GART" "Y" "348" "Phosphorylation (STY)" "GART p Y348" 4453900 7081400 28912 3689500 4056800 60353 5604900 5310700 4735100 NA NA NA NA NA NA NA NA NA -"HNRNPA2B1" "Y" "331" "Phosphorylation (STY)" "HNRNPA2B1 p Y331" 163160 682305 567200 408180 403125 181090 484430 NA NA 539622 254278 372230 546450 337071 78619 2129000 85353 498155 -"HNRNPA2B1" "Y" "336" "Phosphorylation (STY)" "HNRNPA2B1 p Y336" 1419200 883800 292160 2630300 3061400 452540 1528565 565220 741830 166670 NA NA 97195 151450 1155900 NA NA 175010 -"HNRNPA2B1" "Y" "347" "Phosphorylation (STY)" "HNRNPA2B1 p Y347" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1348300 -"HNRNPA2B1" "Y" "174" "Phosphorylation (STY)" "HNRNPA2B1 p Y174" 738650 671505 433130 317450 444740 565615 250350 208150 341735 NA 262848.5 496795 NA 54132 94571 342360 67767 387830 -"CBL" "Y" "674" "Phosphorylation (STY)" "CBL p Y674" 163736 162621 172913.5 3035850 2383900 1663900 1286800 2593700 1287900 NA NA NA NA NA NA NA NA NA -"RPS3" "Y" "120" "Phosphorylation (STY)" "RPS3 p Y120" 1791300 3039300 2031600 2700850 1711950 2706850 2721400 2608500 2534500 NA NA NA NA NA NA NA NA 28397 -"PTPRE" "Y" "696" "Phosphorylation (STY)" "PTPRE p Y696" 4384900 7539350 4283100 6027450 7689700 8206900 6423400 4234000 4474050 1164035 1277900 715655 463405 1098150 1238900 1530155 1130700 1452800 -"AHCY" "Y" "193" "Phosphorylation (STY)" "AHCY p Y193" 942315 1094360 1405000 774660 491920 916335 NA 220150 784530 NA NA NA NA NA NA NA NA NA -"CFL1" "Y" "140" "Phosphorylation (STY)" "CFL1 p Y140" 1406200 1142915 869825 1317400 1537465 1912275 1385725 1322740 1377755 1949200 511580 742830 555255 537445 667140 673070 987345 987350 -"ATP5PB" "Y" "165" "Phosphorylation (STY)" "ATP5PB p Y165" 587925 801645 619120 486050 519160 724420 578835 764870 527375 NA 31048 NA NA NA 18483 NA NA 14881 -"PSMA2" "Y" "76" "Phosphorylation (STY)" "PSMA2 p Y76" NA 934290 975710 349918.5 554610 701630 987980 738855 721885 46166.5 56819.5 NA 106566.5 86525.5 127045.5 98894.5 NA 51922 -"PSMA2" "Y" "57" "Phosphorylation (STY)" "PSMA2 p Y57" 2125700 3259200 1561997.5 1223500 1807350 1822950 1690250 2206500 1510850 753405 799145 873120 966470 562085 508809 786284.5 948180 658360 -"DDX6" "Y" "313" "Phosphorylation (STY)" "DDX6 p Y313" NA NA NA NA NA 523700 2199100 NA NA NA NA NA NA NA NA NA NA NA -"PTBP1" "Y" "127" "Phosphorylation (STY)" "PTBP1 p Y127" 691125 563200 658030 784395 865870 906940 679570 679380 657605 396890 164064 NA 229900 107430 114159 266720 269300 213560 -"TARS" "Y" "298" "Phosphorylation (STY)" "TARS p Y298" 2940100 3977100 3694700 2257700 3275500 3101700 2269000 2762500 2207300 412855 160410 277190 289635 172265 516215 193930 293325 366655 -"VARS" "Y" "469" "Phosphorylation (STY)" "VARS p Y469" 28426 1063775 1197100 NA 1101800 464140 NA NA NA NA NA NA NA NA NA NA NA NA -"MAPK3" "Y" "204" "Phosphorylation (STY)" "MAPK3 p Y204" 1991700 4869800 3275200 5537150 6249150 4884300 8554200 8099950 7235100 25540500 28341000 24722500 5783400 NA NA 5721300 NA 9402200 -"PIK3R1" "Y" "467" "Phosphorylation (STY)" "PIK3R1 p Y467" 1154450 1434895 1468510 1245450 792570 1564385 1394950 1920330 1024095 131220 422765 509630 384800 343055 785660 410060 575585 264450 -"PSMB5" "Y" "220" "Phosphorylation (STY)" "PSMB5 p Y220" 3198800 4212700 3748100 2497200 4044800 4166650 2174100 2537500 2123750 63795 NA NA NA NA NA NA NA NA -"MAPK1" "Y" "187" "Phosphorylation (STY)" "MAPK1 p Y187" 8796326.5 19583000 3785870 16820500 17139500 21332000 21470000 21025500 21857500 30373451 22177395 27901900 5770100 2848895 44467 16475745 9506050 7169965 -"PTPRK;PTPRM" "Y" "916;929" "Phosphorylation (STY)" "PTPRK p Y916; PTPRM p Y929" 304880 235900 108870 NA NA 252596 276965 226500 146683 1435600 652020 718940 591410 495840 1013075 601362 563570 1131100 -"EPHA2" "Y" "960" "Phosphorylation (STY)" "EPHA2 p Y960" NA NA NA 901030 1142200 NA NA 898740 NA 702550 NA NA NA 100300 427625 614800 NA NA -"EPHA2" "Y" "575" "Phosphorylation (STY)" "EPHA2 p Y575" 3620350 4168650 3609800 6006500 2585150 3451200 3071400 6479500 3044550 5822600 4795400 2529300 4410400 2491200 3511100 4578850 4067250 3791750 -"EPHA2" "Y" "588" "Phosphorylation (STY)" "EPHA2 p Y588" NA NA 86364 NA NA NA NA NA 40891 NA NA NA NA NA 3039900 628340 50443 NA -"EPHA2" "Y" "594" "Phosphorylation (STY)" "EPHA2 p Y594" 257670 422560 298190 267145 644280 528820 NA NA NA 10747000 2759965 5258600 2141350 1272400 82801 2547660 NA 1411800 -"EPHA2" "Y" "772" "Phosphorylation (STY)" "EPHA2 p Y772" 29043000 13272650 12655600 14913500 6076600 8617700 12074180 37158500 22699000 63878500 78587000 58411500 7518555 17212590 13400930 62951500 9637270 81508000 -"EPHA3;EPHA4;EPHA5" "Y" "779;779;833" "Phosphorylation (STY)" "EPHA3 p Y779; EPHA4 p Y779; EPHA5 p Y833" 7909600 NA NA 18798000 7732900 NA 24576000 23234950 17041150 3315400 NA NA 11065200 NA 11495000 27319550 15320300 6311200 -"EPHB2" "Y" "780" "Phosphorylation (STY)" "EPHB2 p Y780" NA NA NA NA NA NA NA NA NA 709725 222130 467555 861680 737400 274350 276510 535395 375630 -"PTPN6" "Y" "536" "Phosphorylation (STY)" "PTPN6 p Y536" 1796200 585190 528530 278860 NA 513355 1037055.5 64515 1721900 5200765 1196800 4165500 3271350 787930 NA 2556410 2594205 2489195 -"PTPN6" "Y" "564" "Phosphorylation (STY)" "PTPN6 p Y564" 4774900 1111850 2276500 3874615 5337550 2615850 4761450 2161300 6843450 4159945 468220 2846815 1474355 972700 694620 242160 1304375 2880670 -"SHC1" "Y" "427" "Phosphorylation (STY)" "SHC1 p Y427" 23266500 29390000 24530500 43343000 64269500 74288500 60998000 78389000 61594000 21239992 10257737.5 34072000 1406900 NA 1896050 20420500 19644000 16746500 -"SHC1" "Y" "315" "Phosphorylation (STY)" "SHC1 p Y315" NA NA NA NA NA NA 3808050 5308500 NA NA NA 14063 NA NA 74882 NA NA NA -"TYK2" "Y" "292" "Phosphorylation (STY)" "TYK2 p Y292" 27790500 43379000 31205000 20291000 30314500 33809000 26839000 26028000 28281500 30451800 5814000 28213000 21042200 5884700 32347000 13467100 NA 21084000 -"ERP29" "Y" "66" "Phosphorylation (STY)" "ERP29 p Y66" 2632300 1746600 1740500 1171500 1060610 1023690 1008910 1107155 564465 1401700 3715400 3493075 829380 1449405 496770 387950 2565640 NA -"AXL" "Y" "866" "Phosphorylation (STY)" "AXL p Y866" NA NA NA NA NA NA NA NA NA 431189.5 178356 75245 234382 42896 68514 91040 131920 110370 -"SDC4" "Y" "197" "Phosphorylation (STY)" "SDC4 p Y197" 2613650 3739350 4124000 2746700 2318600 3329050 3016100 2700600 1790400 NA NA NA NA NA 78088 NA NA NA -"ATIC" "Y" "104" "Phosphorylation (STY)" "ATIC p Y104" 6402850 6003600 5085350 2427600 4569900 4293500 4009650 3598050 3299000 NA NA NA NA NA NA NA NA NA -"HNRNPH3" "Y" "296" "Phosphorylation (STY)" "HNRNPH3 p Y296" 74710 NA NA 343550 166070 494880 321650 NA NA 595270 214973.5 223900 308300 704100 160620 161070 597540 424525 -"S100A11" "Y" "30" "Phosphorylation (STY)" "S100A11 p Y30" 4509400 5196150 4409050 10431800 5021070 14046850 5607600 5076345 2237500 154797 170657.5 648695 1183300 543466.5 NA 1068051.5 1192440 1165030 -"CDH5" "Y" "685" "Phosphorylation (STY)" "CDH5 p Y685" NA NA NA NA NA NA 89625 NA NA 8074400 6993550 9840800 11068000 4008950 7666800 10180000 7957450 NA -"HSPA4" "Y" "336" "Phosphorylation (STY)" "HSPA4 p Y336" 1361900 NA 973830 465060 387590 386380 NA NA NA 174774 212930 123340 193684.5 104359 NA 169556.5 416600 126030 -"CTNNA1;CTNNA2" "Y" "419;417" "Phosphorylation (STY)" "CTNNA1 p Y419; CTNNA2 p Y417" 666665 410860 305735 275510 218115 298835 614690 604955 416160 126660 856640 NA 291944.5 NA NA NA NA NA -"IRS1" "Y" "941" "Phosphorylation (STY)" "IRS1 p Y941" 647055 888030 746980 3423050 4465450 4885000 2862750 5080000 3123700 NA NA NA NA NA 214490 NA NA NA -"IRS1" "Y" "989" "Phosphorylation (STY)" "IRS1 p Y989" 73524 85413 162558.5 651630 306140 1113575 274070 358045 573335 NA NA NA NA NA 81935 NA NA NA -"IRS1" "Y" "612" "Phosphorylation (STY)" "IRS1 p Y612" 505820 NA 350510 3595800 NA NA 1315100 NA 607150 441710 NA NA 125300 589340 114220 NA NA 164560 -"IRS1" "Y" "632" "Phosphorylation (STY)" "IRS1 p Y632" 3356400 2159350 2062450 3514500 3612500 4130200 4825600 5421750 2967800 NA NA NA 1563800 319007 1558810 NA NA NA -"IRS1" "Y" "46" "Phosphorylation (STY)" "IRS1 p Y46" 7363350 8898650 8269500 9639500 8901800 13515400 10555550 15864000 11371000 NA NA NA NA NA NA 328650 55846 NA -"AGL" "Y" "584" "Phosphorylation (STY)" "AGL p Y584" 544025 608070 380800 421710 606785 833940 642345 280460 680820 NA NA NA NA 252510 111036 19314 NA NA -"MYH9" "Y" "754" "Phosphorylation (STY)" "MYH9 p Y754" 356785 458665 350245 184425 342745 380725 144880 87674 NA 298560 NA NA NA NA NA NA NA NA -"MYH9" "Y" "1408" "Phosphorylation (STY)" "MYH9 p Y1408" 1656450 2104200 1725900 789315 1446550 1555050 1578800 1497100 1570800 616225 430720 464950 361763 24663 660675 705665 332350 NA -"MYH9" "Y" "1805" "Phosphorylation (STY)" "MYH9 p Y1805" 1126915 1125280 557100 826795 897425 1150245 888625 1088160 351450 250810 NA 143330 82377 402065 521285 290930 557645 457965 -"COPB2" "Y" "101" "Phosphorylation (STY)" "COPB2 p Y101" 350485 377050 236096 NA NA NA 320460 346855 270981.5 NA NA NA NA NA NA NA NA NA -"NUDT1" "Y" "48" "Phosphorylation (STY)" "NUDT1 p Y48" NA 150940 29013 NA 184065 210430 134360 71020 NA NA NA NA NA NA NA NA NA NA -"GMPR;GMPR2" "Y" "318;318" "Phosphorylation (STY)" "GMPR p Y318; GMPR2 p Y318" NA NA NA NA NA NA NA 1242500 NA NA NA NA NA NA NA NA NA NA -"TAGLN2;TAGLN3" "Y" "192;192" "Phosphorylation (STY)" "TAGLN2 p Y192; TAGLN3 p Y192" 1527770 1707785 1189380 2038350 2602200 1931005 1559085 1611310 1726235 447420 145415 98026 474022.5 111410 519145 NA 569660 148795 -"TAGLN2" "Y" "8" "Phosphorylation (STY)" "TAGLN2 p Y8" 3748900 4962700 4384550 6766950 8532850 7615500 5799150 NA 5150300 7714300 8469700 9780000 7996700 4524595 10144000 8239900 8820100 11548000 -"RBMX" "Y" "335" "Phosphorylation (STY)" "RBMX p Y335" 3669600 3452350 2040600 5558050 4510400 3339900 2434900 3281450 2381700 656550 320610 286410 340635 244825 387285 614205 359530 387100 -"IL6ST" "Y" "905" "Phosphorylation (STY)" "IL6ST p Y905" 782925 725475 603730 NA NA NA 635785 566705 563900 3530850 4328400 4093850 5607800 1770300 4296150 2253500 2718400 3561400 -"CEACAM3" "Y" "241" "Phosphorylation (STY)" "CEACAM3 p Y241" 1632405 2032945 1522345 2640400 2058600 1894900 3067450 2285500 2736400 NA NA NA NA NA NA NA NA NA -"CEACAM3" "Y" "230" "Phosphorylation (STY)" "CEACAM3 p Y230" 590990 NA NA 1040700 1316700 1026000 628510 800590 559030 NA NA NA NA NA NA NA NA NA -"STAT3" "Y" "705" "Phosphorylation (STY)" "STAT3 p Y705" 59541500 70173500 56163500 231600000 248905000 256325000 198615000 212430000 169851500 18856000 12951500 18267000 7857150 5268975 7251800 6345500 8632700 7151600 -"NAA10;NAA11" "Y" "106;106" "Phosphorylation (STY)" "NAA10 p Y106; NAA11 p Y106" 1217675 1354450 1100660 646340 1020400 1087095 982085 1335300 1256200 NA 245473 NA NA NA 163080 163380 NA NA -"EIF1;EIF1B" "Y" "30;30" "Phosphorylation (STY)" "EIF1 p Y30; EIF1B p Y30" 788630 1285600 962140 1749550 4757950 NA 1017200 2207500 NA 112323.5 39050 35639 NA 40963 65202 NA NA NA -"PI4KA" "Y" "1154" "Phosphorylation (STY)" "PI4KA p Y1154" 540315 570415 500300 895425 334676 898370 501690 568690 516775 409335 161671 96339 224480 55766.5 206480 265155 247824.5 125470 -"TEC" "Y" "519" "Phosphorylation (STY)" "TEC p Y519" 149440 246290 265020 100596.5 80318 200848 213955 205175 195183 709460 593515 1214100 108160 490155 353625 880310 798170 787280 -"FRK" "Y" "46" "Phosphorylation (STY)" "FRK p Y46" 46676000 54773000 44846500 54004500 40142000 38896500 37774500 21862310 24417000 23059000 18506500 15200300 26165000 24154500 35517500 10864000 17068500 18377000 -"FRK" "Y" "497" "Phosphorylation (STY)" "FRK p Y497" 3286200 2419650 2512450 1604550 884310 1892000 1785550 1219600 1358800 800300 458380 846980 347495 846440 686630 1052815 529710 664360 -"FRK" "Y" "387" "Phosphorylation (STY)" "FRK p Y387" 1208735 1463790 1234360 1091095 515020 1396640 1591775 2537290 1665435 135390 139220 110140 591805 341835 852770 589065 595610 803385 -"SYK" "Y" "203" "Phosphorylation (STY)" "SYK p Y203" 839145 1006535 597010 1033060 1056020 1161990 616175 412780 608100 NA NA NA NA NA NA NA NA NA -"SYK" "Y" "296" "Phosphorylation (STY)" "SYK p Y296" NA 440760 426135 937710 1120770 1390000 NA 269920 397415 137200 109450 169560 508180 126170 522110 359914 514170 548650 -"MAPK8;MAPK10" "Y" "185;223" "Phosphorylation (STY)" "MAPK8 p Y185; MAPK10 p Y223" NA NA NA 83152.5 85406 95089 118945 150540 152315 800005 548675 667030 754640 NA 1201185 1002400 544150 1454000 -"MAPK9" "Y" "185" "Phosphorylation (STY)" "MAPK9 p Y185" 199635 152170 149015 210510 273765 198010 365290 401705 486390 530145 276430 355485 478640 313740 479530 602540 598675 641720 -"CRK" "Y" "136" "Phosphorylation (STY)" "CRK p Y136" NA 873200 NA 2802500 3044200 4336550 3270100 3627550 1911960 395640 454035 711430 305360 NA 464635 613130 690310 712090 -"CRK" "Y" "251" "Phosphorylation (STY)" "CRK p Y251" 410790 972510 1509900 4351600 3969750 2731975 1948760 1662500 2409450 NA NA NA NA NA NA NA 25506 NA -"CRKL" "Y" "251" "Phosphorylation (STY)" "CRKL p Y251" 3176650 2671400 1839400 2731100 3208250 4141200 3816100 3901950 4482550 5294700 3354622 6124900 2803550 5718000 5836600 5378800 4650300 4668650 -"RPS10" "Y" "12" "Phosphorylation (STY)" "RPS10 p Y12" 3171250 8462000 4917100 4187400 4264350 4171550 2460600 3772300 3637950 177990 NA NA 29445.5 NA 173345 NA 80183.5 23945 -"IQGAP1" "Y" "1510" "Phosphorylation (STY)" "IQGAP1 p Y1510" 1557285 1454950 1285055 1754450 2132600 1973150 1505760 1169100 NA NA NA NA NA NA NA NA NA NA -"PLA2G4A" "Y" "535" "Phosphorylation (STY)" "PLA2G4A p Y535" 2443250 2888100 1807750 2382900 2165150 2721500 1402650 1551950 1529300 NA NA NA 21924 NA NA NA NA NA -"QARS" "Y" "491" "Phosphorylation (STY)" "QARS p Y491" 2193250 2351600 2077650 1306300 1273850 2120270 2119905 2240200 1694300 NA NA NA NA NA NA NA NA NA -"PITPNB;PITPNA" "Y" "91;91" "Phosphorylation (STY)" "PITPNB p Y91; PITPNA p Y91" 333670 229280 213620 164680 198650 245995 279180 266550 212465 NA NA NA NA NA NA NA NA NA -"PITPNB;PITPNA" "Y" "93;93" "Phosphorylation (STY)" "PITPNB p Y93; PITPNA p Y93" 333670 229280 213620 164680 198650 245995 279180 266550 212465 NA NA NA NA NA NA NA NA NA -"PXN" "Y" "88" "Phosphorylation (STY)" "PXN p Y88" 13149650 17090000 17662250 11163000 13837150 12413400 19111000 11197310 20121000 94134000 83335000 158010000 84255500 81688000 81386800 46085630 53686050 80200500 -"PXN" "Y" "118" "Phosphorylation (STY)" "PXN p Y118" 34013500 46485500 33473000 29069500 37142500 40730500 22723500 26683500 35034000 111708500 63234500 58093400 99861500 71295500 239360000 44473050 165850000 71674000 -"PCYT1A;PCYT1B" "Y" "213;213" "Phosphorylation (STY)" "PCYT1A p Y213; PCYT1B p Y213" 740040 1034675 1056850 705085.5 35400 1511600 669514.5 1299395 1076625 29020 NA 18422 NA NA NA NA 19945 23294 -"PSMB2" "Y" "146" "Phosphorylation (STY)" "PSMB2 p Y146" 926355 667040 846560 658405 551670 577700 853400 NA 416990 490580 441760 680655 517560 467095 495490 405980 415840 341035 -"PSMB2" "Y" "147" "Phosphorylation (STY)" "PSMB2 p Y147" 926355 667040 846560 658405 551670 577700 853400 NA 416990 490580 441760 680655 517560 467095 495490 405980 415840 341035 -"GSK3B;GSK3A" "Y" "216;279" "Phosphorylation (STY)" "GSK3B p Y216; GSK3A p Y279" 257792100 488405000 464070000 169768750 2484500 375825000 389475000 289322527.5 118714200 30498000 155772000 174810000 194185000 117536500 393320000 164640000 209723500 289660000 -"GMPS" "Y" "526" "Phosphorylation (STY)" "GMPS p Y526" NA 499050 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"CRIP1" "Y" "12" "Phosphorylation (STY)" "CRIP1 p Y12" 6108150 8186150 3582363.5 6698000 7951950 11442700 8821050 10443500 8602500 608766.5 857110 125505 59696 103980 786050 152702.5 87851 475542 -"EMD" "Y" "161" "Phosphorylation (STY)" "EMD p Y161" 1632400 1467670 1096930 1891850 1132400 2940600 1701800 1083230 664210 1970260 1254855 962390 75576 245930 119930 NA 239830 316510 -"VASP" "Y" "39" "Phosphorylation (STY)" "VASP p Y39" NA 1464780 1365565 1640100 NA 1786870 NA 1428250 1097295 NA NA NA NA NA NA NA NA NA -"DNM2;DNM1" "Y" "231;231" "Phosphorylation (STY)" "DNM2 p Y231; DNM1 p Y231" NA NA NA NA NA 87535 424035 486250 419740 NA 174490 NA NA NA 105720 NA NA NA -"CCT8" "Y" "30" "Phosphorylation (STY)" "CCT8 p Y30" 375000 1149630 833335 297605 219520 487680 492890 558020 305260 NA 72452 99482 NA NA NA 37125 115520 NA -"ANXA11" "Y" "482" "Phosphorylation (STY)" "ANXA11 p Y482" 194610 NA 396715 NA NA NA 813690 NA 377175 NA NA NA NA NA NA NA NA NA -"RAB13" "Y" "5" "Phosphorylation (STY)" "RAB13 p Y5" 2798500 3151350 1750900 3531150 4757400 4032995 NA NA NA NA NA NA NA NA NA NA 204520 NA -"HNRNPA3" "Y" "360" "Phosphorylation (STY)" "HNRNPA3 p Y360" 1134995 1646200 428290 2383600 992000 2069585 2294000 425920 1498200 141200 511810 NA 171770 NA 705225 293940 190500 386700 -"HNRNPM" "Y" "64" "Phosphorylation (STY)" "HNRNPM p Y64" 559155 740505 629200 1340050 1624850 1547990 707330 714220 756450 888560 529040 569400 917190 793440 1090345 849065 827160 999100 -"ARHGDIA" "Y" "133" "Phosphorylation (STY)" "ARHGDIA p Y133" 1794855 1814415 1351000 775505 1136520 1752885 1213005 1524040 1652255 NA NA NA NA NA 370670 199021 NA 180690 -"EFNB2" "Y" "304" "Phosphorylation (STY)" "EFNB2 p Y304" 1452730 2135400 1377700 945380 641960 1206840 1467215 1297670 1634500 260537.5 228666 197965 195160.5 260144.5 510055 305334.5 213764 259151.5 -"CRIP2" "Y" "13" "Phosphorylation (STY)" "CRIP2 p Y13" 225810 329760 119900 NA NA 563520 677260 175050 NA NA NA 226480 NA NA 640250 NA NA 692770 -"CRIP2" "Y" "134" "Phosphorylation (STY)" "CRIP2 p Y134" 1608200 1737750 1411650 2389700 2773400 3500450 3042313.5 4150000 3434900 NA 1786400 2249900 NA 2307300 NA NA NA NA -"ACLY" "Y" "682" "Phosphorylation (STY)" "ACLY p Y682" 2100300 2125000 2199500 465240 583470 NA NA NA 569190 125547.5 79219 24208 103486 162140 88640 NA 161840 NA -"COPA" "Y" "249" "Phosphorylation (STY)" "COPA p Y249" 1612350 1144790 870855 NA 1751500 1576365 900400 854480 917235 NA NA 353060 NA NA NA NA 149090 NA -"CLTCL1;CLTC" "Y" "1096;1096" "Phosphorylation (STY)" "CLTCL1 p Y1096; CLTC p Y1096" 233160 452570 303795 295910 370640 449775 282595 351690 126102 97297 98712 96837 NA NA 127655 117188.5 91318.5 108531 -"MAPK12" "Y" "185" "Phosphorylation (STY)" "MAPK12 p Y185" 5861200 6612100 6203500 14229000 10825050 12820050 10832500 8046090 6952350 8930316.5 5967500 6707300 4350264.5 3258620 14774000 3932600 6333700 4863550 -"PTTG1IP" "Y" "174" "Phosphorylation (STY)" "PTTG1IP p Y174" 5569050 3199300 3570500 3009700 1540900 2022350 4688900 3362700 3791200 950265 407540 240110 884235 162130 739425 1596650 1078250 386980 -"RARS" "Y" "291" "Phosphorylation (STY)" "RARS p Y291" 857960 NA NA 487740 624285 751700 995925 999960 815825 NA NA NA NA NA NA NA NA NA -"PRKAG1" "Y" "39" "Phosphorylation (STY)" "PRKAG1 p Y39" 312430 368950 NA 175110 137240 195035 321690 NA NA NA NA NA NA NA NA NA NA NA -"EPHB4" "Y" "574" "Phosphorylation (STY)" "EPHB4 p Y574" 1529950 489830 496960 NA 1376710 705930 935240 NA NA 7046200 2285385 1154600 NA NA 573030 2869900 355960 3353500 -"AK2" "Y" "12" "Phosphorylation (STY)" "AK2 p Y12" 221780 212545 150678.5 NA NA NA NA 146340 NA NA 125552.5 183680 NA 40711 NA NA NA NA -"FGF8" "Y" "72" "Phosphorylation (STY)" "FGF8 p Y72" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12547000 NA NA -"FGF8" "Y" "75" "Phosphorylation (STY)" "FGF8 p Y75" NA 202960 200584.5 NA 32940 57125 77272 36478 52306 6711700 5032300 NA NA 3349600 97858 25384000 NA NA -"AFDN" "Y" "1230" "Phosphorylation (STY)" "AFDN p Y1230" 2700650 2086900 2125550 3588900 2711550 3273800 4013350 4077150 3664700 2969500 1571300 2178150 2262750 1735100 NA 3330700 1622600 1857200 -"EIF3B" "Y" "525" "Phosphorylation (STY)" "EIF3B p Y525" 1787875 4094950 2474000 1109930 NA NA 2438150 46226 1960350 19891 NA 57521 43141 NA 64242 NA 50388 70650 -"EIF3B" "Y" "339" "Phosphorylation (STY)" "EIF3B p Y339" NA NA NA NA NA NA 1162200 2387300 1931200 NA 63263.5 89730 NA 50145.5 36900 NA 40059 NA -"BCAR1" "Y" "128" "Phosphorylation (STY)" "BCAR1 p Y128" 917730 735650 1898455 NA NA NA NA 1088000 1178875 16699600 9269600 11387700 10500850 11330000 15062150 26014550 10143100 12391250 -"BCAR1" "Y" "306" "Phosphorylation (STY)" "BCAR1 p Y306" 1199030 1306560 1004260 1293000 1750600 NA 614800 576070 961630 NA NA NA 7301100 NA NA 2760400 7819200 8036800 -"BCAR1" "Y" "249" "Phosphorylation (STY)" "BCAR1 p Y249" 225145 365370 214110 254460 120500 239005 520280 277590 308150 1768760 1617595 1962350 2221110 1975800 3233700 6525700 2337800 1696700 -"BCAR1" "Y" "387" "Phosphorylation (STY)" "BCAR1 p Y387" 364820 659535 264550 871700 650940 NA 645610 NA 867600 10063350 10036900 15248000 7680950 4903900 3987840 4955750 2592835 12014850 -"BCAR1" "Y" "234" "Phosphorylation (STY)" "BCAR1 p Y234" 203550 525450 684540 136780 207940 224290 211105 259285 211620 NA 748175 953550 441130 878020 796600 1359800 1043300 NA -"BCAR1" "Y" "410" "Phosphorylation (STY)" "BCAR1 p Y410" 203235 233320 284360 151905 146880 291000 254980 272700 189300 NA 516080 NA NA NA 2075600 304208 877171.5 736560 -"GSDMD" "Y" "158" "Phosphorylation (STY)" "GSDMD p Y158" 13295000 12642000 10350650 8859250 11427350 11625000 8167050 8836350 8239150 103990 318745 230030 246250 134516 216310 275900 139201.5 175995 -"ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2" "Y" "53;53;55;55;54;55" "Phosphorylation (STY)" "ACTG1 p Y53; ACTB p Y53; ACTA1 p Y55; ACTC1 p Y55; ACTG2 p Y54; ACTA2 p Y55" 459205 992820 687335 915120 772345 1380800 393790 858135 730700 818940 664935 1397600 379535 413175 621005 613265 996950 887625 -"ACTG1;ACTB" "Y" "198;198" "Phosphorylation (STY)" "ACTG1 p Y198; ACTB p Y198" 3241250 3285850 2497950 2789200 1878600 3590950 3481450 3244300 2567100 1485580 1382190 1828550 1105875 717375 709075 769905 1264140 2708400 -"ACTG1;ACTB" "Y" "294;294" "Phosphorylation (STY)" "ACTG1 p Y294; ACTB p Y294" NA 2821250 3429800 NA 4171600 2576400 2428300 3095900 NA 503100 1155825 1316370 726470 1383900 NA 1409600 1868200 850910 -"EIF4A1;EIF4A2" "Y" "70;71" "Phosphorylation (STY)" "EIF4A1 p Y70; EIF4A2 p Y71" 199960 181480 439475 282665 315435 172400 455955 438475 397255 NA NA NA NA NA NA NA NA NA -"EIF4A1;EIF4A2" "Y" "250;251" "Phosphorylation (STY)" "EIF4A1 p Y250; EIF4A2 p Y251" 500710 653725 608460 849835 1259050 399329.5 396590 486370 366350 NA NA NA NA NA NA NA NA NA -"S100A10" "Y" "25" "Phosphorylation (STY)" "S100A10 p Y25" 3686400 3706050 3208250 3305900 3318950 4275200 3399850 3764400 2840750 694780 NA NA NA NA 1234000 636190 388300 NA -"RPL15" "Y" "59" "Phosphorylation (STY)" "RPL15 p Y59" 1107600 1544150 1621800 924165 750860 1372640 674740 577080 828355 132670 NA NA NA NA NA NA NA NA -"MAGOH;MAGOHB" "Y" "40;42" "Phosphorylation (STY)" "MAGOH p Y40; MAGOHB p Y42" 354870 1247380 860775 NA 635290 471460 1004115 955420 403710 NA NA NA NA NA NA NA NA NA -"HNRNPK" "Y" "380" "Phosphorylation (STY)" "HNRNPK p Y380" 191430 225565 NA NA 338980 458570 174580 77031 NA 240020 247745 252925 257330 319800 290430 386395 258468.5 422575 -"PPP1CA" "Y" "306" "Phosphorylation (STY)" "PPP1CA p Y306" 571830 754350 826200 1179200 1048460 700240 574725 474030 NA 2503655 939390 988430 1236965 1207840 1782350 2252600 1268455 1469635 -"PPP1CB" "Y" "306" "Phosphorylation (STY)" "PPP1CB p Y306" 2292900 1554230 862030 2168150 2965950 2570600 1741585 2939800 NA 1711400 564040 174400 1198300 667510 1460900 514735 834460 NA -"YWHAE" "Y" "131" "Phosphorylation (STY)" "YWHAE p Y131" 367065 168200 265260 187055 117570 342095 307085 420115 266530 NA NA NA 212437 NA 305979 108313.5 144563.5 NA -"RAN" "Y" "147" "Phosphorylation (STY)" "RAN p Y147" 5953800 1812500 2601211 2571900 2241400 3942500 91707 124136 NA NA NA NA NA NA NA 319100 NA NA -"RAN" "Y" "155" "Phosphorylation (STY)" "RAN p Y155" NA 2410450 NA 1639750 NA 1719800 NA 859170 1250170 NA NA 56350 27203 NA 94481 518215 65035 61066.5 -"GNB2;GNB1" "Y" "59;59" "Phosphorylation (STY)" "GNB2 p Y59; GNB1 p Y59" 97938.5 77519 43266 NA 130070 177655 401330 235930 302410 NA NA NA NA NA NA NA NA NA -"GRB2" "Y" "209" "Phosphorylation (STY)" "GRB2 p Y209" 57203 NA 370760 747655 530290 806510 876430 NA NA NA 44255 235440 NA NA NA NA 364030 308180 -"TRA2B" "Y" "260" "Phosphorylation (STY)" "TRA2B p Y260" 1088210 676310 1133100 1306455 1354035 1882145 888580 927210 442640 NA NA NA NA NA NA NA NA NA -"GNAS;GNAS" "Y" "339;982" "Phosphorylation (STY)" "GNAS p Y339; GNAS p Y982" 512155 539750 359205 NA 543265 230957 1265800 1227800 NA NA NA 54657 NA NA NA 96606 204200 NA -"YWHAZ" "Y" "128" "Phosphorylation (STY)" "YWHAZ p Y128" 917290 938060 818810 592825 727695 896460 1054345 797925 1215200 608060 NA 231430 NA 37082 NA NA NA 317160 -"DYNLL1;DYNLL2" "Y" "65;65" "Phosphorylation (STY)" "DYNLL1 p Y65; DYNLL2 p Y65" 2043000 3138600 2187900 2882900 4516600 4446700 2743600 3484500 2385750 1614285 533750 410770 1248890 762290 475380 1388250 1303765 1167955 -"RPS21" "Y" "53" "Phosphorylation (STY)" "RPS21 p Y53" NA NA NA 869960 776155 1468600 1132110 1117695 792700 376155 NA 93628 312005 NA 261615 NA 534305 370690 -"RACK1" "Y" "52" "Phosphorylation (STY)" "RACK1 p Y52" NA NA NA NA NA NA 867695 384660 873225 650185 1120200 723170 NA 98446 NA 1382000 NA NA -"RACK1" "Y" "228" "Phosphorylation (STY)" "RACK1 p Y228" NA NA NA 700520 439435 NA NA NA 875190 68256 NA NA NA 28274 NA NA 42247 24288 -"EEF1A1;EEF1A1P5;EEF1A2" "Y" "141;141;141" "Phosphorylation (STY)" "EEF1A1 p Y141; EEF1A1P5 p Y141; EEF1A2 p Y141" 8102700 8341200 7162300 8347100 7602600 8215200 6188800 6373600 5106050 NA 1674400 2444150 1963750 2006650 2651550 NA 2087200 1106355 -"EEF1A1;EEF1A1P5" "Y" "177;177" "Phosphorylation (STY)" "EEF1A1 p Y177; EEF1A1P5 p Y177" 2736800 1917845.5 NA 2791550 3988700 4741600 NA NA NA 941350 1951600 1418885 NA NA 29462 226295 134290 NA -"EEF1A1;EEF1A1P5;EEF1A2" "Y" "29;29;29" "Phosphorylation (STY)" "EEF1A1 p Y29; EEF1A1P5 p Y29; EEF1A2 p Y29" 7407600 9882350 7175750 5859900 9030350 8514300 7912700 7583400 7317450 720920 1397285 827990 1579490 688745 2443850 1451930 1520815 1194100 -"TUBA1B;TUBA4A;TUBA1C" "Y" "103;103;103" "Phosphorylation (STY)" "TUBA1B p Y103; TUBA4A p Y103; TUBA1C p Y103" NA 147600 359735 870585 573145 309100 1273200 742785 430450 272010 125690 68089.5 194130 NA 128160 107645 158670.5 142460 -"TUBA1B;TUBAL3;TUBA4A;TUBA1C" "Y" "312;319;312;312" "Phosphorylation (STY)" "TUBA1B p Y312; TUBAL3 p Y319; TUBA4A p Y312; TUBA1C p Y312" 99115 120120 NA 518955 362575 350820 428840 501155 474925 77686 NA 80201.5 145677.5 NA 150107.5 147003 64637.5 66145 -"SIRPA" "Y" "496" "Phosphorylation (STY)" "SIRPA p Y496" NA NA NA NA NA NA NA NA NA 1517395 609285 392095 257540 170170 734949 175540 1479380 236600 -"SHC2" "Y" "414" "Phosphorylation (STY)" "SHC2 p Y414" NA NA NA NA 2615700 2399600 81050 496700 626870 NA NA NA NA NA NA NA NA NA -"HDLBP" "Y" "437" "Phosphorylation (STY)" "HDLBP p Y437" 8870850 10751850 5836700 11231500 6220450 16877000 5790600 5119950 6182350 454095 249700 417070 106450 121966 157655 308500 339520 170600 -"CDK5" "Y" "15" "Phosphorylation (STY)" "CDK5 p Y15" 6197900 8047800 7328850 9344750 3980880 9653600 10154400 9980600 41131 7149600 2006500 5832500 3853000 4456400 1953890 5281550 8712400 5578400 -"CDK16;CDK17" "Y" "176;203" "Phosphorylation (STY)" "CDK16 p Y176; CDK17 p Y203" NA 90238 13331500 27609000 24959000 21556000 15689500 4430315 12152350 106152000 67457300 118715500 78750000 90098500 95477000 100125500 97359500 125375000 -"CLTC" "Y" "634" "Phosphorylation (STY)" "CLTC p Y634" 1616900 1598400 2195200 1481200 1410150 1377350 1483100 1260600 1326825 NA NA NA NA NA NA NA NA NA -"CLTC" "Y" "1438" "Phosphorylation (STY)" "CLTC p Y1438" 2899250 NA 1185976.5 1342900 1905200 1942000 2901800 2472300 NA NA NA NA NA NA NA NA NA NA -"NFKB2" "Y" "77" "Phosphorylation (STY)" "NFKB2 p Y77" 16560600 12013600 5860600 16369000 11383400 12867400 20334000 9847300 12059900 NA NA 207590 NA NA 382360 185952 334500 NA -"SPTBN1;SPTBN2" "Y" "1680;1676" "Phosphorylation (STY)" "SPTBN1 p Y1680; SPTBN2 p Y1676" 828355 693795 711585 648145 572610 743745 639280 532400 885230 624565 NA 282630 401140 351475 397240 269789 568955 411990 -"TIAL1" "Y" "140" "Phosphorylation (STY)" "TIAL1 p Y140" NA 268335 352860 204750 278210 277025 86574 163560 174380 NA NA NA NA NA NA NA NA NA -"FABP5" "Y" "131" "Phosphorylation (STY)" "FABP5 p Y131" 619115 716780 499115 NA 263190 NA 643870 326880 545555 NA NA NA NA NA NA NA NA NA -"DSC2" "Y" "839" "Phosphorylation (STY)" "DSC2 p Y839" 249725 NA 178180 330000 243785 178130 314970 113880 223808 NA NA NA NA NA NA NA NA NA -"NUCB1" "Y" "179" "Phosphorylation (STY)" "NUCB1 p Y179" 725540 816560 694315 NA 481435 746370 589795 374590 532775 522375 584025 687215 490240 493860 575960 355255 357805 362875 -"CAV1" "Y" "14" "Phosphorylation (STY)" "CAV1 p Y14" NA NA 89225 NA NA NA NA NA NA 1659470 866220 736130 753710 713160 2178190 1385300 932400 908960 -"SSBP1" "Y" "99" "Phosphorylation (STY)" "SSBP1 p Y99" 1602800 1769800 1941300 1236000 1442750 2053450 1560830 1082600 930380 NA NA NA 79990 39050 247300 98072 222650 162538 -"MST1R" "Y" "1238" "Phosphorylation (STY)" "MST1R p Y1238" NA NA NA 140150 NA NA NA NA NA 739090 NA 71538 452730 205500 861340 464935 289340 310930 -"PTK2" "Y" "861" "Phosphorylation (STY)" "PTK2 p Y861" 429970 297510 1188495 893930 650500 1526595 895295 243780 230130 114530 NA NA 467010 730770 NA 4869800 NA 765890 -"PTK2" "Y" "925" "Phosphorylation (STY)" "PTK2 p Y925" 381410 571395 639325 619105 356890 563900 817345 337800 671975 748785 414710 1056720 605430 1090700 457470 1417450 2003500 NA -"PTK2" "Y" "397" "Phosphorylation (STY)" "PTK2 p Y397" 320705 196550 187726.5 NA 2010900 443740 NA 84854 117710 NA 68879 122135 141680 118530 1109485 201975 268250 137450 -"PTK2" "Y" "570" "Phosphorylation (STY)" "PTK2 p Y570" 16608250 17929050 13652000 8263150 8577800 12508300 12668300 15212600 13613950 9519900 8818700 10743050 7142350 7755150 5947450 18947000 8354400 8249600 -"PTK2" "Y" "576" "Phosphorylation (STY)" "PTK2 p Y576" 6811250 14105000 13587300 10127200 10841800 8399010 11032550 10806800 6919850 22032000 11767700 15800700 16768400 13731400 29477500 16583450 21296000 18898200 -"PTK2" "Y" "577" "Phosphorylation (STY)" "PTK2 p Y577" 2335750 13520250 10972700 42910000 10928895 20675000 7863700 18485120 8917300 5569700 6474400 18684500 7521500 12077500 68565000 1473300 25428850 6872800 -"PRKCD" "Y" "630" "Phosphorylation (STY)" "PRKCD p Y630" NA NA NA NA NA NA NA NA NA 660110 919755 1330700 NA 1380300 2057900 NA NA 1949800 -"PRKCD" "Y" "374" "Phosphorylation (STY)" "PRKCD p Y374" NA NA NA 232200 NA NA NA 87059 194410 2645500 226950 NA NA NA 106950 1983742 NA NA -"PRKCD" "Y" "334" "Phosphorylation (STY)" "PRKCD p Y334" 3717400 843510 1384190 2992200 1145700 1029600 2874500 2795900 2716750 20951250 12788650 13991850 18352700 9985850 10930000 13128950 14937850 15060250 -"PRKCD" "Y" "313" "Phosphorylation (STY)" "PRKCD p Y313" 3710500 1944750 1888550 2811000 2130300 NA 797200 1688450 1903035 16390750 6452800 7986600 8939950 6781950 5935700 10393050 10368200 12500400 -"PTPN11" "Y" "546" "Phosphorylation (STY)" "PTPN11 p Y546" 6248850 8344350 3485000 44820000 36657000 51122500 38942000 41710500 34410000 2625500 2316500 1799700 608528 1414570 1225520 729430 1642440 1339915 -"PTPN11" "Y" "62" "Phosphorylation (STY)" "PTPN11 p Y62" 2778300 4088900 7006200 3569900 2779800 2380800 NA NA 2559800 NA 6398800 6339900 22938000 13089600 29586000 31936000 12327800 29342000 -"PTPN11" "Y" "584" "Phosphorylation (STY)" "PTPN11 p Y584" 5063050 5951300 5512100 37875000 43410000 45728000 36025500 44868000 31966500 5055500 5796550 6786550 NA 1703080 2811580 6183350 3786400 4644350 -"PTPN11" "Y" "279" "Phosphorylation (STY)" "PTPN11 p Y279" 5067400 5383300 4546850 3671500 3011000 5035250 4854700 6407400 3750350 209340 67885 115073 259790 NA 48587 338590 84947 76651 -"GFPT1" "Y" "553" "Phosphorylation (STY)" "GFPT1 p Y553" 1390390 1932800 897690 1221300 2150800 1866800 1612020 1457665 890040 NA NA NA NA NA NA NA 525510 NA -"APLP2" "Y" "755" "Phosphorylation (STY)" "APLP2 p Y755" NA 465830 388735 415035 726880 553610 178380 530865 231150 NA NA NA NA NA NA NA NA NA -"ZNF33B;ZNF33A" "Y" "595;594" "Phosphorylation (STY)" "ZNF33B p Y595; ZNF33A p Y594" 167684.5 99380.5 56483 319635 119320 184130 244590 243960 264715 NA NA NA NA NA NA NA NA NA -"PRDX1" "Y" "194" "Phosphorylation (STY)" "PRDX1 p Y194" 2332850 2742700 2070000 3309100 1741500 2652000 2370100 2579100 2527150 62562 NA NA NA NA 125283 148110 NA NA -"TJP1" "Y" "1524" "Phosphorylation (STY)" "TJP1 p Y1524" 35547 1047000 279755 1141300 NA 1780700 504110 1274600 745455 5610900 NA NA NA NA NA NA 205150 NA -"TJP1" "Y" "1061" "Phosphorylation (STY)" "TJP1 p Y1061" 127640 200151 159480 247705 86699 211380 144884.5 235138 226410 NA NA NA NA NA NA NA NA NA -"SOS1" "Y" "681" "Phosphorylation (STY)" "SOS1 p Y681" NA NA NA NA 94064 139672 488755 425145 385505 NA NA NA NA NA NA NA NA NA -"SOS2" "Y" "679" "Phosphorylation (STY)" "SOS2 p Y679" NA NA NA NA 318690 NA 2144850 782750 NA NA NA NA NA NA NA NA NA NA -"TNK2" "Y" "284" "Phosphorylation (STY)" "TNK2 p Y284" NA NA NA NA NA NA NA NA NA NA 1472835 1829600 2573200 1386000 NA 422640 771220 NA -"TNK2" "Y" "859" "Phosphorylation (STY)" "TNK2 p Y859" 274370 346170 583990 2145300 1779785 1701650 716690 162480 698610 7708350 5864750 5303350 1737935 1091430 506295 2833300 1156880 3048050 -"TNK2" "Y" "827" "Phosphorylation (STY)" "TNK2 p Y827" 8997600 6603300 5359150 4698550 4752250 5204800 5313450 3369000 5202150 4864600 4884850 5921300 4758950 3672100 9584050 4483750 2293415 NA -"SRSF1" "Y" "189" "Phosphorylation (STY)" "SRSF1 p Y189" 2015750 3203950 NA 2766500 4571900 4506900 3676400 6612500 5266700 NA 145375 268910 131590 104287 152788 177935 67321 218419 -"PCDH1" "Y" "897" "Phosphorylation (STY)" "PCDH1 p Y897" 2829500 1798500 1805200 2084850 1463200 1615750 1930300 3121950 2696650 NA NA NA NA 1511300 149440 NA 3086100 4399950 -"AHNAK" "Y" "5836" "Phosphorylation (STY)" "AHNAK p Y5836" NA NA NA NA NA NA NA NA NA 3277335 1649415 4062500 263610 957970 NA 245310 201820 2066430 -"AHNAK" "Y" "964" "Phosphorylation (STY)" "AHNAK p Y964" NA NA NA NA NA NA NA NA NA 1500540 659560 861285 544160 996960 838440 1111180 1270715 939750 -"AHNAK" "Y" "715" "Phosphorylation (STY)" "AHNAK p Y715" 279040 470155 353205 1351305 1011795 1050690 1323070 990490 733730 7413900 2037200 5444950 6401350 5275300 6136650 7283400 6720850 6096800 -"AHNAK" "Y" "160" "Phosphorylation (STY)" "AHNAK p Y160" NA NA NA 118280 NA 66463 113735 72109 134545 1066920 NA NA 496755 NA 637250 1102800 702320 532500 -"ARHGEF5" "Y" "656" "Phosphorylation (STY)" "ARHGEF5 p Y656" 331320 292700 282410 2441750 2900050 2697150 1795400 2140800 1833300 1369760 791610 812880 83139 NA 127650 NA NA NA -"ARHGEF5" "Y" "1140" "Phosphorylation (STY)" "ARHGEF5 p Y1140" NA NA NA NA NA NA 828290 318820 439430 NA NA NA NA NA NA NA NA NA -"ARHGEF5" "Y" "1370" "Phosphorylation (STY)" "ARHGEF5 p Y1370" 11166000 15590200 16655000 10003650 13215500 16988400 8714100 10785200 10327000 378209.5 190346 153492.5 389920 135992 NA 584683.5 258670 292505 -"EPS8" "Y" "525" "Phosphorylation (STY)" "EPS8 p Y525" 784050 866725 778055 NA 831050 810435 1598845 1251955 1353530 644395 596705 735945 266251 257854.5 302480 790510 576865 383500 -"EPS8" "Y" "485" "Phosphorylation (STY)" "EPS8 p Y485" NA NA NA NA NA NA NA NA NA 2350100 NA NA NA NA NA NA NA NA -"EPS8" "Y" "491" "Phosphorylation (STY)" "EPS8 p Y491" NA NA NA NA NA NA NA NA NA NA NA 1359300 NA NA NA NA NA NA -"EPS8" "Y" "774" "Phosphorylation (STY)" "EPS8 p Y774" NA 2277650 1852650 4170000 5742650 7500100 5420150 5656700 5035000 1026195 1096175 1785750 1823300 992760 2472300 1940450 1847725 2361700 -"TRAP1" "Y" "498" "Phosphorylation (STY)" "TRAP1 p Y498" 673020 1095295 1033640 482600 603670 606635 1228200 1012900 NA NA NA NA NA NA NA NA NA NA -"TRAP1" "Y" "499" "Phosphorylation (STY)" "TRAP1 p Y499" NA NA NA NA NA NA 1228200 NA NA NA NA NA NA NA NA NA NA NA -"ANK3" "Y" "533" "Phosphorylation (STY)" "ANK3 p Y533" 662780 NA NA 698765 623190 NA 225100 435480 NA 201775 161050 185810 124620 237135 224220 2188300 169410 151350 -"ANK3;ANK2" "Y" "632;630" "Phosphorylation (STY)" "ANK3 p Y632; ANK2 p Y630" 364750 214820 256095 297730 354980 342035 140990 185550 374570 NA NA NA NA NA NA NA NA NA -"DLG1" "Y" "760" "Phosphorylation (STY)" "DLG1 p Y760" NA NA NA NA NA NA NA NA 115850 5191300 3217150 2530900 2062100 1339765 2839000 3092300 3025500 3599750 -"MYO1E" "Y" "7" "Phosphorylation (STY)" "MYO1E p Y7" NA NA NA NA NA NA 425345 249610 NA 2050255 NA 590400 1243670 772805 NA NA 712960 580380 -"PRKAA1" "Y" "455" "Phosphorylation (STY)" "PRKAA1 p Y455" NA NA NA NA NA NA NA NA 2129300 NA NA NA NA NA NA NA NA NA -"PRKAA1" "Y" "442" "Phosphorylation (STY)" "PRKAA1 p Y442" 6809050 7344300 7540000 4769500 5263100 6325700 7946750 8299000 8154050 NA NA NA NA NA NA NA NA NA -"HNRNPA0" "Y" "180" "Phosphorylation (STY)" "HNRNPA0 p Y180" 1239900 1145200 1288900 2542300 1424900 2434650 356130 1001610 1027700 676185 296177.5 196445 78235 397910 278550 598180 464430 285280 -"CBLB" "Y" "889" "Phosphorylation (STY)" "CBLB p Y889" 741885 1001520 279110 10291500 14606000 10141400 7437450 6810800 6192250 NA 893360 814500 NA NA NA NA 624260 NA -"SRSF9" "Y" "179" "Phosphorylation (STY)" "SRSF9 p Y179" 803560 2424550 1733865 4176700 NA 9882500 3149600 9440600 6092850 NA NA NA NA NA NA NA NA NA -"GRB10" "Y" "404" "Phosphorylation (STY)" "GRB10 p Y404" NA 105300 87987 668865 892210 838115 714680 NA 1114255 NA NA NA NA NA NA NA NA NA -"EIF3I" "Y" "308" "Phosphorylation (STY)" "EIF3I p Y308" 508025 597360 446165 546895 689990 661115 1481800 994035 1508100 NA NA NA NA NA NA NA NA NA -"GOLGA4" "Y" "2148" "Phosphorylation (STY)" "GOLGA4 p Y2148" NA 141560 371485 NA NA NA 392610 162000 256970 NA NA 302740 NA NA NA 566640 NA NA -"ADAM9" "Y" "769" "Phosphorylation (STY)" "ADAM9 p Y769" 6090200 499790 3688295 9485350 10660400 6630785 8752650 9625000 3712700 12037660 7221900 13626750 13469450 11995750 14501900 10326550 19027500 24835000 -"TNK1" "Y" "661" "Phosphorylation (STY)" "TNK1 p Y661" 506820 283400 451080 681770 370460 736020 505610 560435 494305 1244430 347620 962380 1124980 638530 805605 708975 896730 1601230 -"GAB1" "Y" "406" "Phosphorylation (STY)" "GAB1 p Y406" NA NA NA 547585 543285 869235 338800 350680 314070 1616100 1046400 1276600 108440 NA NA 1043500 83725 154450 -"GAB1" "Y" "627" "Phosphorylation (STY)" "GAB1 p Y627" NA 187240 NA 617155 727495 NA 364370 753175 707985 6816650 6430050 11617000 168710 61430 56741 1782900 NA 1448445 -"GAB1" "Y" "47" "Phosphorylation (STY)" "GAB1 p Y47" NA NA NA NA 496600 460650 NA 256620 243125 NA NA NA NA NA NA NA NA NA -"GAB1" "Y" "48" "Phosphorylation (STY)" "GAB1 p Y48" NA NA NA NA 496600 460650 NA 256620 243125 NA NA NA NA NA NA NA NA NA -"GAB1" "Y" "659" "Phosphorylation (STY)" "GAB1 p Y659" 107880 332135 203775 6534800 4334750 7858250 3554400 4396250 1773900 6713450 5185450 6239400 NA 188850 66943 1884300 3874200 4143050 -"PRPF4B" "Y" "849" "Phosphorylation (STY)" "PRPF4B p Y849" 1418350000 1671600000 1570150000 779380000 1617550000 1113700000 893820000 713880000 690795000 1329075000 1384435000 1607100000 1254965000 1176720000 2854900000 1087350000 1392900000 1121585000 -"RIPK1" "Y" "387" "Phosphorylation (STY)" "RIPK1 p Y387" 555090 383040 NA 809230 NA 295500 1518770 NA NA NA 351360 NA NA NA NA 218700 NA NA -"HDAC1" "Y" "221" "Phosphorylation (STY)" "HDAC1 p Y221" 202295 290615 176340 277975 361480 359450 173205 166040 173055 NA NA NA NA NA NA NA NA NA -"HDAC1" "Y" "222" "Phosphorylation (STY)" "HDAC1 p Y222" 202295 290615 176340 277975 361480 359450 173205 166040 173055 NA NA NA NA NA NA NA NA NA -"DCTN2" "Y" "6" "Phosphorylation (STY)" "DCTN2 p Y6" 235210 270460 170850 310130 357590 23675 189410 243200 258560 NA NA NA NA NA NA NA NA NA -"DYRK1A;DYRK1B" "Y" "319;271" "Phosphorylation (STY)" "DYRK1A p Y319; DYRK1B p Y271" 12256200 NA 4493700 9183950 6926450 4465100 4200500 10634900 4805300 NA NA NA NA NA NA NA NA NA -"DYRK1A;DYRK1B" "Y" "321;273" "Phosphorylation (STY)" "DYRK1A p Y321; DYRK1B p Y273" 440550000 521100000 386850000 308060000 321285000 263240000 221680000 360790000 338315000 1746795 342050 946855 1609090 872655 23052.95 2795070 1348410 1100750 -"CTTN" "Y" "154" "Phosphorylation (STY)" "CTTN p Y154" 7126400 3179200 6085400 10049000 11357800 7066300 11071550 9072750 12960000 122230 30416 95952 187570 20910 159526 412720 220849 61369 -"CTTN" "Y" "446" "Phosphorylation (STY)" "CTTN p Y446" 9667250 11555550 7582200 8024150 8838150 7382200 9648600 7462200 7202600 NA 1227700 1091000 1081700 NA 939650 2704300 59670 820170 -"CTTN" "Y" "453" "Phosphorylation (STY)" "CTTN p Y453" 1365500 1854100 NA 1366000 1635100 1616250 785010 835160 667790 NA NA 167840 85084 NA 237310 NA NA 59924 -"CTTN" "Y" "228" "Phosphorylation (STY)" "CTTN p Y228" 13613800 16554000 8675100 30258500 13666150 18483500 20396500 22062500 15716700 NA NA 450645 223080 479675 465935 624540 558050 394135 -"CTTN" "Y" "421" "Phosphorylation (STY)" "CTTN p Y421" 20207000 27150500 24355000 23048000 30436500 26847500 5569350 6902300 7886600 3823200 2158000 2443850 3198250 3093200 2870300 430070.5 1766900 2024250 -"CTTN" "Y" "265" "Phosphorylation (STY)" "CTTN p Y265" 2695455 2952000 4040200 5657750 5175600 2713800 3585100 3501100 4054250 NA NA NA NA NA NA NA NA NA -"CTTN" "Y" "334" "Phosphorylation (STY)" "CTTN p Y334" 6865200 5539050 NA 7964550 10805250 11510700 6320300 5649300 4379300 NA NA NA NA NA NA NA NA NA -"CTTN" "Y" "178" "Phosphorylation (STY)" "CTTN p Y178" 2364350 2651500 2398350 4062150 4680600 5350100 3614750 3607000 2885800 109710 245460 313300 788050 394040 521150 563680 251445 852280 -"CTTN" "Y" "141" "Phosphorylation (STY)" "CTTN p Y141" 1580075 2320250 1801350 4178050 2989100 5001750 1798925 1239100 1780700 235105 68617 216290 197055 NA 256560 NA 89219 NA -"CTTN" "Y" "104" "Phosphorylation (STY)" "CTTN p Y104" 7392550 5867500 5296800 16157000 8552500 9186350 7862350 8327350 7942750 NA NA NA NA NA NA NA NA NA -"CTTN" "Y" "199" "Phosphorylation (STY)" "CTTN p Y199" 6542750 7990700 5792000 9593200 11311100 12909350 7662800 8327600 7600800 819775 741105 750160 861770 612625 773490 761730 666920 992895 -"CTTN" "Y" "162" "Phosphorylation (STY)" "CTTN p Y162" 9263050 11683350 8469950 14252500 14235300 17587250 16023000 13748950 11449950 1497955 1667200 1713000 1317000 1019500 1641000 1700200 1666900 1122105 -"TRIM25" "Y" "278" "Phosphorylation (STY)" "TRIM25 p Y278" 768490 949010 784930 562105 605300 719765 414035 513815 471710 221585 103051 210090 86483 207625 221240 180015 148140 178805 -"PTK2B" "Y" "579" "Phosphorylation (STY)" "PTK2B p Y579" NA NA NA NA NA NA NA NA NA 3001600 232495 1898050 654530 816564 351025 1097659 502805 1363315 -"PTK2B" "Y" "580" "Phosphorylation (STY)" "PTK2B p Y580" 426900 392890 349465 NA 159760 251950 747660 162040 149940 1061760 1107915 3380750 1870470 1755905 3535950 1430365 2023370 3621625 -"GRB7" "Y" "259" "Phosphorylation (STY)" "GRB7 p Y259" 1029060 681870 841840 845180 535070 1088120 1439800 1308440 1080115 NA 77098.5 202510 237950 65980 196090 NA 110265 605540 -"NEDD9" "Y" "345" "Phosphorylation (STY)" "NEDD9 p Y345" 377165 592575 518245 146170 87047.5 NA 149960 130070 135490 3040385 2253890 2644465 2938700 3972200 6421500 2252300 1833185 2477800 -"NEDD9" "Y" "241" "Phosphorylation (STY)" "NEDD9 p Y241" NA NA NA NA NA NA 53743 NA 216850 8026750 5608350 6829400 9891250 7714050 20423850 6783750 6170100 8222450 -"NEDD9" "Y" "106" "Phosphorylation (STY)" "NEDD9 p Y106" NA NA NA NA NA NA NA NA NA NA NA 2888600 NA NA 35294000 386410 1167000 NA -"NEDD9" "Y" "223" "Phosphorylation (STY)" "NEDD9 p Y223" NA 88852 115230 NA NA NA 76003 248380 221940 1811535 1479625 2527400 2319033 2047050 3198150 3793855 2224650 2253000 -"NEDD9" "Y" "317" "Phosphorylation (STY)" "NEDD9 p Y317" 724740 NA 649750 NA NA NA NA NA NA 587980 NA 9480200 4635400 NA 9989300 NA 4040700 728160 -"NEDD9" "Y" "92" "Phosphorylation (STY)" "NEDD9 p Y92" 214350 983165 558140 324190 237685 310695 136117.5 694570 809100 7406050 3284100 5491200 4072850 7660300 4908150 12019490 6604150 7874400 -"NEDD9" "Y" "629" "Phosphorylation (STY)" "NEDD9 p Y629" NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2322500 NA NA NA -"NEDD9" "Y" "164" "Phosphorylation (STY)" "NEDD9 p Y164" NA NA NA NA NA NA NA NA NA 28989000 NA NA NA NA NA NA NA NA -"NEDD9" "Y" "166" "Phosphorylation (STY)" "NEDD9 p Y166" 1163840 3252800 1287720 NA 361630 835785 1812850 1797290 1742600 6462300 17122950 12507000 25176500 20984000 47033000 8085100 17929200 19456500 -"NEDD9" "Y" "168" "Phosphorylation (STY)" "NEDD9 p Y168" NA NA NA NA NA NA NA NA NA NA NA 35873000 NA NA NA 22223000 NA NA -"EIF4H" "Y" "12" "Phosphorylation (STY)" "EIF4H p Y12" 2453250 2938000 2352000 4744900 4854200 4419450 3513700 3792200 2720450 2715300 936495 796620 2978900 763805 2894150 3010550 2849700 1646350 -"PLEC" "Y" "4155" "Phosphorylation (STY)" "PLEC p Y4155" 454590 NA 140260 711650 345630 385550 533870 1343300 1144800 NA NA NA NA NA NA NA NA 177620 -"RNPS1" "Y" "205" "Phosphorylation (STY)" "RNPS1 p Y205" 1246920 1887550 1190200 1395900 1733800 1447550 698760 516230 653130 NA NA NA NA NA NA NA NA NA -"SHB" "Y" "268" "Phosphorylation (STY)" "SHB p Y268" 4978650 4096500 2816150 3701350 2921000 3700650 8206200 9024200 7853650 37959 9042250 10076950 8159400 7069600 6019050 5895300 4635250 3046700 -"SHB" "Y" "246" "Phosphorylation (STY)" "SHB p Y246" 290897 1212300 1003100 NA NA NA 509480 1258000 918150 117560 843890 770145 763840 612660 783640 NA NA 911060 -"SHB" "Y" "114" "Phosphorylation (STY)" "SHB p Y114" 1095900 636570 882640 538170 2363800 1035100 1979460 1917765 1821920 608350 926890 1150335 781080 622865 1780100 539460 487460 1014900 -"SLC1A5" "Y" "524" "Phosphorylation (STY)" "SLC1A5 p Y524" 607660 407170 368740 1437200 775830 NA 452520 560960 657190 336845 364100 NA 662100 564300 348060 416185 297780 207815 -"MAPK11" "Y" "182" "Phosphorylation (STY)" "MAPK11 p Y182" NA NA 1163600 843410 1132200 NA 661540 465940 NA 661340 NA 720930 NA 534925 329910 21341 NA 548220 -"MAPK14" "Y" "182" "Phosphorylation (STY)" "MAPK14 p Y182" 46288500 53630095 52061500 87988000 35441290 2279300 102579500 109157500 79557500 193090000 239470000 159692000 53321500 170230000 244475000 172613500 200440500 220735000 -"OCLN" "Y" "337" "Phosphorylation (STY)" "OCLN p Y337" 311185 304940 191800 313815 179280 280090 368245 147124 262140 439010 667285 783285 913375 454090 542725 647590 474580 1203500 -"OCLN" "Y" "315" "Phosphorylation (STY)" "OCLN p Y315" NA NA NA NA NA NA NA NA NA 111610 NA 298480 172390 415480 NA NA 272294.5 NA -"OCLN" "Y" "368" "Phosphorylation (STY)" "OCLN p Y368" 107410 141790 278740 657900 188610 313300 389095 372640 182810 193390 810330 700535 793485 108930 604160 651800 212830 918625 -"MAN2A1" "Y" "33" "Phosphorylation (STY)" "MAN2A1 p Y33" 1023635 663930 828320 1077645 555040 831240 937010 844710 806130 331160 158992.5 201470 208730 145270 279005 299010 250650 243110 -"TXNRD1" "Y" "281" "Phosphorylation (STY)" "TXNRD1 p Y281" 1112700 369940 538250 NA NA 261590 1672400 NA 360120 NA NA 200190 NA NA NA NA 126826 224196.5 -"TXNRD1" "Y" "163" "Phosphorylation (STY)" "TXNRD1 p Y163" 2756100 2932350 2054550 3469150 1911324.5 2946150 792045 775840 534467 126529.5 38922.5 26192 NA NA 24781 NA NA NA -"ACTBL2" "Y" "88" "Phosphorylation (STY)" "ACTBL2 p Y88" NA 34789 NA NA NA NA NA NA NA 8650400 3911350 4413900 12071000 3373250 4722718 NA NA NA -"HSP90AB4P" "Y" "32" "Phosphorylation (STY)" "HSP90AB4P p Y32" 1413400 2221500 1556050 2633150 3707050 3585450 1402300 1628250 2081000 2020550 1244945 1741550 1688050 432090 2393350 1228400 2201595 1851700 -"DOCK11" "Y" "1223" "Phosphorylation (STY)" "DOCK11 p Y1223" 1105000 837900 538105 441280 470800 NA 889580 362550 398150 2673830 1635420 2156750 2337105 2381400 537560 2207400 1818445 2259195 -"FNBP1L" "Y" "291" "Phosphorylation (STY)" "FNBP1L p Y291" 318330 556760 254840 3290450 2870500 5178000 3332650 1378518 2926200 97449 103960 163225 140275 172560 138929.5 167750 94543 229215 -"KIAA1217" "Y" "520" "Phosphorylation (STY)" "KIAA1217 p Y520" NA NA NA NA NA NA NA 1644000 1953100 NA NA NA NA NA NA 48278 105220 NA -"KIAA1217" "Y" "393" "Phosphorylation (STY)" "KIAA1217 p Y393" 301490 2643635 349735 521145 NA NA 6058150 465235 5661350 950030 1092275 2298810 1076665 273300 3464850 813665 165199.5 230920 -"KIAA1217" "Y" "244" "Phosphorylation (STY)" "KIAA1217 p Y244" 1880750 1884380 1683700 954850 1423700 1744750 1741050 1675500 666584 2552500 1114745 724036.5 359770 200935 931135 1014600 943955 1349710 -"KIAA1217" "Y" "245" "Phosphorylation (STY)" "KIAA1217 p Y245" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 510420 -"TUT7" "Y" "77" "Phosphorylation (STY)" "TUT7 p Y77" NA NA NA NA NA NA NA NA NA 305359.5 385455 613190 106310 133920 NA 221220 221628 411370 -"ANO1" "Y" "51" "Phosphorylation (STY)" "ANO1 p Y51" NA NA NA NA NA NA NA NA NA NA 1817750 1890100 1692500 1739850 1689700 1439400 NA 1785000 -"ANO1" "Y" "7" "Phosphorylation (STY)" "ANO1 p Y7" 179125 417895 222720 458645 404080 546270 210060 309830 NA 6778300 5223250 6698700 4813700 3224500 4916550 6627750 6026200 6870950 -"TNS2" "Y" "483" "Phosphorylation (STY)" "TNS2 p Y483" 759070 1735225 799520 3525100 3721200 NA 4645700 4637300 3508500 899257.5 174505 396010 270070 178560 533060 236320 NA 308465 -"TNS3" "Y" "855" "Phosphorylation (STY)" "TNS3 p Y855" NA 773490 704470 978090 NA NA 2149700 1970500 1783000 3859600 2958100 3416350 3930000 5914000 3230550 2086650 929900 2584900 -"TNS3" "Y" "780" "Phosphorylation (STY)" "TNS3 p Y780" 307360 285770 385550 251400 298495 248050 279100 314485 103071.5 3921400 2139900 2440300 1824500 2254855 2230300 63235 2674000 1957355 -"TNS3" "Y" "601" "Phosphorylation (STY)" "TNS3 p Y601" NA NA NA NA NA NA NA NA NA NA NA 488480 770220 NA 3905380 990325 NA 2910500 -"TNS3" "Y" "354" "Phosphorylation (STY)" "TNS3 p Y354" 1898150 3486700 2498300 52123 45559.5 2176900 1023400 NA NA 12763000 2439200 2656850 4115900 4521600 4872600 3345250 933315.5 1925600 -"KIAA0895L" "Y" "393" "Phosphorylation (STY)" "KIAA0895L p Y393" 2522550 4595550 4007600 1830750 2374300 2207100 286335.5 61416 NA 1360095 805800 1854950 1596820 1486925 1199535 26721050 NA NA -"LAMTOR1" "Y" "40" "Phosphorylation (STY)" "LAMTOR1 p Y40" 348670 987050 606935 1318900 625820 733300 820920 420810 596757.5 1201600 1087800 5104550 498985 276890 NA 1293900 2873750 1424500 -"PLEKHA7" "Y" "1011" "Phosphorylation (STY)" "PLEKHA7 p Y1011" 1531500 1942050 1626150 1618050 1945600 2024400 2361000 3347400 2393000 NA 73297 NA 1271900 41498 NA NA 191420 NA -"CAVIN1" "Y" "308" "Phosphorylation (STY)" "CAVIN1 p Y308" NA NA NA 183980 NA NA NA NA NA 689825 124190 276755 422540 119238.5 1696300 66796 NA NA -"SHC4" "Y" "424" "Phosphorylation (STY)" "SHC4 p Y424" 144362.5 138258.5 170380 342285 203795 429755 357970 320535 298350 NA NA NA NA NA NA NA NA NA -"TMC5" "Y" "55" "Phosphorylation (STY)" "TMC5 p Y55" 860920 825206 1008930 1193050 NA NA 787900 1117375 710630 NA NA NA NA NA NA 384605 162680 NA -"KIAA1549L" "Y" "1417" "Phosphorylation (STY)" "KIAA1549L p Y1417" NA NA NA NA NA NA NA NA NA 700660 289140 291488.5 NA NA NA 628313.5 446745 464865 -"KIAA1549L" "Y" "1418" "Phosphorylation (STY)" "KIAA1549L p Y1418" NA NA NA NA NA NA NA NA NA 700660 289140 291488.5 NA NA NA 628313.5 446745 464865 -"PAXIP1" "Y" "738" "Phosphorylation (STY)" "PAXIP1 p Y738" 645630 810650 610215 480225 519300 766585 532925 495055 554845 181640 NA 26470 50849 NA 114641 92594.5 84134 NA -"RAPH1" "Y" "1226" "Phosphorylation (STY)" "RAPH1 p Y1226" NA 1000655 805390 3331700 1689400 2132400 214060 NA NA NA NA NA NA NA NA NA NA NA -"SPATC1" "Y" "504" "Phosphorylation (STY)" "SPATC1 p Y504" NA NA 8982500 NA NA NA NA 14326500 NA NA NA 1559100 1860000 NA NA 2664200 3268050 NA -"SND1" "Y" "109" "Phosphorylation (STY)" "SND1 p Y109" 66690500 67770000 60229000 38769500 50542000 43474000 46836500 51502500 48871000 1831950 1763750 2111350 1625700 801176 1819950 1171200 563684.5 1486300 -"CYFIP1;CYFIP2" "Y" "108;108" "Phosphorylation (STY)" "CYFIP1 p Y108; CYFIP2 p Y108" 410600 638420 513435 308880 932110 923410 676500 282160 588805 NA NA NA NA NA NA NA NA NA -"DCXR" "Y" "149" "Phosphorylation (STY)" "DCXR p Y149" 1849135 1477120 1186450 868635 1139560 1198440 588650 1287680 1161355 NA NA NA NA NA NA NA NA NA -"LSR" "Y" "323" "Phosphorylation (STY)" "LSR p Y323" NA 204460 628507.5 593965 NA NA NA 788490 NA 3937400 2027300 1075600 766040 1653745 613960 445815 2561600 2381000 -"LSR" "Y" "328" "Phosphorylation (STY)" "LSR p Y328" 166714 NA 384810 90331 160374.5 78355 NA NA NA 188570 57828 NA 1121807 186690 74674 183020 249785 180250 -"LSR" "Y" "551" "Phosphorylation (STY)" "LSR p Y551" 3833192.5 5482400 4201150 7573800 5806600 4878950 7112550 7012900 5802200 2929000 889720 692355 2236350 489165 1367750 4080550 2576050 1361470 -"LSR" "Y" "372" "Phosphorylation (STY)" "LSR p Y372" 1839500 3902550 3047200 3923000 2931200 5590300 4106750 3972800 3714400 1055000 1348295 1501325 1149100 1138685 1904890 2258650 1777980 1609840 -"LSR" "Y" "406" "Phosphorylation (STY)" "LSR p Y406" 80334 672360 454295 NA 329410 630945 1136500 717105 NA 1285020 713690 641850 645360 387740 597900 209260 692350 534300 -"NIT1" "Y" "143" "Phosphorylation (STY)" "NIT1 p Y143" 841720 996940 635795 328900 339940 714170 781375 842440 603875 NA NA NA NA NA NA NA NA NA -"GPSM1" "Y" "311" "Phosphorylation (STY)" "GPSM1 p Y311" 1245010 667100 959320 874875 803030 929920 1222495 1451500 1394835 225430 346780 NA 63718 249045 NA NA 198232.5 301180 -"PRAG1" "Y" "413" "Phosphorylation (STY)" "PRAG1 p Y413" 1436000 3530450 3164650 2421400 3068550 4284700 4949200 3779250 3239900 NA NA NA NA NA NA NA NA NA -"HIPK2;HIPK1" "Y" "361;352" "Phosphorylation (STY)" "HIPK2 p Y361; HIPK1 p Y352" 67635500 75035000 65177500 53176000 79695000 67138500 80010000 76595500 69174500 115580 NA NA NA NA 169131 616455 NA NA -"MISP" "Y" "95" "Phosphorylation (STY)" "MISP p Y95" 963620 1614565 521660 627230 NA 47130 NA NA NA NA NA NA NA 308410 NA NA NA NA -"MISP" "Y" "350" "Phosphorylation (STY)" "MISP p Y350" 363550 NA NA 585380 NA NA 1401900 1984600 722240 NA NA NA NA NA NA NA NA NA -"ARHGAP12" "Y" "243" "Phosphorylation (STY)" "ARHGAP12 p Y243" NA NA NA NA NA NA NA NA NA 564380 608570 3094000 831920 810850 NA 1984500 NA 4102650 -"RBM12B" "Y" "326" "Phosphorylation (STY)" "RBM12B p Y326" 1240000 1455100 464530 612730 1024690 1030200 867120 915135 893270 82614 48442 62466 63132 42766 46994 NA 42546 57389 -"ELOA2" "Y" "389" "Phosphorylation (STY)" "ELOA2 p Y389" NA NA NA NA NA NA NA 4974600 5868850 NA NA NA NA NA NA NA NA NA -"SYTL1" "Y" "304" "Phosphorylation (STY)" "SYTL1 p Y304" 2290750 1377010 1136280 5297300 1070400 NA 1437105 1321410 1753500 1553230 1371480 1607735 455970 1316200 748234 939582 443340 1292710 -"SYTL1" "Y" "308" "Phosphorylation (STY)" "SYTL1 p Y308" NA NA 551515 NA 444600 833320 NA NA NA NA NA NA NA NA NA NA NA NA -"ABI1" "Y" "213" "Phosphorylation (STY)" "ABI1 p Y213" 1546260 2399950 2138900 2585700 3137400 2391750 2114050 2019600 2106850 299030 NA 814480 1040870 968860 1204285 918385 245540 NA -"RDH10" "Y" "126" "Phosphorylation (STY)" "RDH10 p Y126" 162740 299220 126996.5 169995 204465 264660 382780 421685 252105 NA NA NA NA NA NA NA 108990 NA -"ASCC3" "Y" "438" "Phosphorylation (STY)" "ASCC3 p Y438" 567960 474110 NA 380240 1094600 967735 810020 376910 748375 NA NA 223750 NA 175010 NA NA NA NA -"MPP5" "Y" "528" "Phosphorylation (STY)" "MPP5 p Y528" NA NA NA NA NA NA NA NA NA 397640 999000 870235 848250 772520 900840 704630 325000 824995 -"MPP5" "Y" "243" "Phosphorylation (STY)" "MPP5 p Y243" 4869650 12241000 2912600 5083000 4600900 55374 5132450 4293500 5227000 15971850 11333950 12349050 18152950 11484750 8016700 6513200 17200000 12474500 -"AFAP1L2" "Y" "383" "Phosphorylation (STY)" "AFAP1L2 p Y383" NA NA NA NA NA NA NA NA NA 695070 685530 1281180 823500 1127635 770550 779510 1173080 1813550 -"AFAP1L2" "Y" "413" "Phosphorylation (STY)" "AFAP1L2 p Y413" 87045 94118 NA NA NA NA NA NA 64164 NA 8844500 6270700 NA 9701700 NA 235110 NA NA -"ENAH" "Y" "529" "Phosphorylation (STY)" "ENAH p Y529" 89485 150060 243263.5 451745 419255 629475 117540 478390 138040 457055 272800 326510 268015 279285 412390 397235 390640 443580 -"TC2N" "Y" "154" "Phosphorylation (STY)" "TC2N p Y154" 677095 594110 500860 504170 410990 477070 1020600 986330 736725 131643.5 50989.5 58626 91066 20450 62714.5 107092 185446 143957.5 -"SERBP1" "Y" "207" "Phosphorylation (STY)" "SERBP1 p Y207" 249110 739790 424540 1922100 3393600 3122800 328990 73182 687310 NA NA NA NA NA NA NA NA NA -"LEMD2" "Y" "122" "Phosphorylation (STY)" "LEMD2 p Y122" 258135 317600 236305 345510 272350 485655 251200 256705 226025 499550 NA NA NA NA 137730 NA NA NA -"CCNY" "Y" "172" "Phosphorylation (STY)" "CCNY p Y172" NA NA NA NA NA NA NA NA NA 2474035 5048700 2253775 3012605 1359720 2427500 1205665 2092275 1866970 -"EXPH5" "Y" "1019" "Phosphorylation (STY)" "EXPH5 p Y1019" 330650 NA 299740 331490 490800 NA 311475 219860 209280 141847.5 56194 93617 78719.5 NA NA 40569 68249 NA -"REPS2" "Y" "558" "Phosphorylation (STY)" "REPS2 p Y558" NA NA NA NA NA NA NA NA NA 787325 417725 422696.5 544560 216840 818100 294928 521170 371260 -"GPRC5A" "Y" "347" "Phosphorylation (STY)" "GPRC5A p Y347" 600800 730780 707770 631360 767055 413140 NA NA 620590 472890 2128130 1305200 NA 1420700 1040100 4764300 1934930 1354600 -"GPRC5A" "Y" "350" "Phosphorylation (STY)" "GPRC5A p Y350" 2403900 2252250 1946600 2436150 2063750 1937150 1575765 1182285 1481165 8120945 8988250 1305200 8866800 5278600 7385150 9264600 8609700 9046650 -"GPRC5A" "Y" "317" "Phosphorylation (STY)" "GPRC5A p Y317" 1049560 352540 127780 1683800 773460 978200 1015955 501510 669185 2170400 9174600 NA 6255600 NA 3367800 7531600 394390 8484250 -"GPRC5A" "Y" "293" "Phosphorylation (STY)" "GPRC5A p Y293" NA NA NA NA NA NA NA NA NA 3308100 4879900 4455600 1752850 3303600 15063 NA 1869200 2539600 -"PNPT1" "Y" "459" "Phosphorylation (STY)" "PNPT1 p Y459" 1064100 1198700 790055 1048300 774740 1226450 755945 897260 893020 80966.5 NA NA NA NA NA NA NA 23538 -"CD99L2" "Y" "243" "Phosphorylation (STY)" "CD99L2 p Y243" 441420 711660 739700 792515 337990 1135700 78856 NA NA NA NA NA NA NA NA NA 38437 NA -"EPS8L1" "Y" "684" "Phosphorylation (STY)" "EPS8L1 p Y684" NA NA NA 456650 511880 363870 519925 583315 NA 513350 NA NA NA NA 791100 622770 671660 564360 -"UTP15" "Y" "84" "Phosphorylation (STY)" "UTP15 p Y84" 938640 1437385 891235 664440 814765 383160 934230 829655 666420 NA NA NA NA NA NA NA NA NA -"PARD3" "Y" "489" "Phosphorylation (STY)" "PARD3 p Y489" NA NA 295365 670835 879340 839710 NA 79916 70907 3362000 1187200 2607400 2474800 2359900 1720350 1245750 1582810 1599300 -"PARD3" "Y" "1080" "Phosphorylation (STY)" "PARD3 p Y1080" 6185700 8312850 5847750 5578100 5975600 6315900 6846850 6464600 5126550 17478200 15178500 16755700 16761500 12023700 15203000 9060150 18182000 14930000 -"PARD3" "Y" "719" "Phosphorylation (STY)" "PARD3 p Y719" 304650 452725 445015 502580 547780 NA 202430 464125 202260 NA NA NA 272210 685435 336590 NA NA 634965 -"PARD3" "Y" "1177" "Phosphorylation (STY)" "PARD3 p Y1177" NA NA 130900 NA NA NA 140870 NA NA 166359 76340 155730 170683.5 114605 154580 99845.5 92240 90000.5 -"PARD3B" "Y" "1000" "Phosphorylation (STY)" "PARD3B p Y1000" 283310 460740 353900 405800 254980 264410 199250 NA 391120 378670 249440 126020 227778.5 325180 148540 190393 220880 644150 -"UBASH3B" "Y" "19" "Phosphorylation (STY)" "UBASH3B p Y19" NA NA 186855 NA NA NA NA NA 305230 NA 132680 1508000 NA NA NA 644565 85966 NA -"FRS2" "Y" "306" "Phosphorylation (STY)" "FRS2 p Y306" 510030 436440 529240 1751500 NA NA 1798200 NA 1150000 187772.5 NA 131450 NA 233470 NA NA NA 327440 -"LMO7" "Y" "1667" "Phosphorylation (STY)" "LMO7 p Y1667" 271810 159720 254640 462200 NA 337495 248990 241880 234228.5 NA NA NA NA NA NA NA NA NA -"LMO7" "Y" "1672" "Phosphorylation (STY)" "LMO7 p Y1672" 1543625 2111815 1314280 1302035 1776845 3114500 2390200 2838000 1517425 NA NA NA NA NA NA NA NA NA -"ATXN2L" "Y" "349" "Phosphorylation (STY)" "ATXN2L p Y349" 288595 309905 307850 620560 432575 645000 430490 559065 386295 271710 231305 265180 331035 226215 413295 429965 290920 353875 -"CASKIN2" "Y" "253" "Phosphorylation (STY)" "CASKIN2 p Y253" 1383750 1673800 1352500 779505 680185 1061500 759365 906085 NA 2353850 1194750 1861600 1417250 2951700 NA 2845750 2210400 2363550 -"ARAP2" "Y" "473" "Phosphorylation (STY)" "ARAP2 p Y473" NA NA NA NA NA 326320 NA NA NA NA 736000 1338950 NA 1313290 NA 3171100 584150 NA -"DDX1" "Y" "628" "Phosphorylation (STY)" "DDX1 p Y628" 1192975 1381060 1080175 564650 1045760 1560600 1063675 1472700 918055 NA NA NA NA NA NA NA NA NA -"PIK3R3" "Y" "199" "Phosphorylation (STY)" "PIK3R3 p Y199" 1154450 1434895 1468510 1245450 792570 1564385 1394950 1920330 1024095 131220 422765 509630 384800 343055 785660 410060 575585 264450 -"ANKS1A" "Y" "455" "Phosphorylation (STY)" "ANKS1A p Y455" NA NA NA NA NA NA 184730 NA NA NA 459405 20243 292150 NA 508350 297320 576040 NA -"DYRK4;DYRK2" "Y" "264;382" "Phosphorylation (STY)" "DYRK4 p Y264; DYRK2 p Y382" 10188550 14926000 11032500 8138400 12721500 1.8e+07 11844200 13445000 10813500 NA 286450 NA 197570 57257 211080 256780 NA NA -"NECTIN2" "Y" "454" "Phosphorylation (STY)" "NECTIN2 p Y454" 210040 249300 219190 623680 466840 726515 396450 238440 396785 2788100 816060 986885 455910 421095 237620 1307040 1015705 746320 -"HDAC2" "Y" "222" "Phosphorylation (STY)" "HDAC2 p Y222" 1693100 1691450 325523.5 1054500 1491700 1452300 1158100 1005500 1061200 NA NA NA NA NA NA NA NA NA -"HDAC2" "Y" "223" "Phosphorylation (STY)" "HDAC2 p Y223" 1693100 1691450 325523.5 1054500 1491700 1452300 1158100 1005500 1061200 NA NA NA NA NA NA NA NA NA -"DLG3" "Y" "673" "Phosphorylation (STY)" "DLG3 p Y673" 73262 130100.5 79511 NA 95493 225955 249780 161560 224220 2805260 4851000 6354600 598250 379600 115370 1224580 1518800 1279505 -"EVPL" "Y" "1520" "Phosphorylation (STY)" "EVPL p Y1520" 700725 771090 NA 1139920 1208815 1771400 1558600 928660 1078335 NA NA 544530 NA NA NA 675560 970750 NA -"NEO1" "Y" "575" "Phosphorylation (STY)" "NEO1 p Y575" NA NA NA NA NA NA NA NA NA 1557100 2035750 2150300 1686300 1181580 881140 1552425 1761750 2160550 -"SMARCD2" "Y" "197" "Phosphorylation (STY)" "SMARCD2 p Y197" NA NA NA 78316 NA 224065 82226.5 110190 93684 NA NA NA NA NA NA NA NA NA -"RAB8B;RAB8A" "Y" "5;5" "Phosphorylation (STY)" "RAB8B p Y5; RAB8A p Y5" 483590 266370 313275 416500 446150 526240 282930 395945 410165 2228150 1167850 1834500 2855600 2365400 2958850 3297950 2740900 2059450 -"EMG1" "Y" "61" "Phosphorylation (STY)" "EMG1 p Y61" 1570330 2563300 617880 1351950 1190940 1477920 1837770 1503815 1415450 NA NA NA 516240 NA NA NA 191330 144360 -"LPP" "Y" "317" "Phosphorylation (STY)" "LPP p Y317" NA NA 1897900 NA NA NA NA NA NA NA NA NA NA 2099700 NA NA NA 2561300 -"LPP" "Y" "296" "Phosphorylation (STY)" "LPP p Y296" NA NA NA NA NA NA NA NA NA NA 30649 46491 48723 62808 139744 62451 172812.5 151168 -"LPP" "Y" "297" "Phosphorylation (STY)" "LPP p Y297" NA NA NA NA NA NA NA NA NA NA 30649 46491 48723 62808 139744 62451 172812.5 151168 -"LPP" "Y" "301" "Phosphorylation (STY)" "LPP p Y301" 692855 601075 530205 NA 518570 1050700 854685 832465 NA NA NA NA 308203.5 35345 88283 371690 118292 23435 -"C11orf52" "Y" "103" "Phosphorylation (STY)" "C11orf52 p Y103" 9254250 8605500 5745500 14182500 8074100 8059039.5 13578000 8605350 8937950 14887200 9708850 11473750 21464000 8956950 2664096.5 5963136.5 5704700 9905500 -"FAF2" "Y" "79" "Phosphorylation (STY)" "FAF2 p Y79" 1616700 1100930 1614485 1821450 2389100 3362600 1513815 1364095 1146520 4833950 4782450 5160800 1303815 746830 1283085 1350300 2755250 2394200 -"S100A16" "Y" "20" "Phosphorylation (STY)" "S100A16 p Y20" 258610 381195 251870 NA 54298 22580 178785 126997 132062.5 NA NA NA NA NA NA NA NA NA -"S100A16" "Y" "26" "Phosphorylation (STY)" "S100A16 p Y26" 7137300 8387800 6911950 NA NA 3569400 10076000 8783800 9347950 NA NA NA NA NA NA NA NA NA -"PDLIM5" "Y" "251" "Phosphorylation (STY)" "PDLIM5 p Y251" 482350 515030 504370 617015 1152000 300670 269750 184830 550690 NA NA NA NA NA NA NA 196590 NA -"KIRREL1" "Y" "572" "Phosphorylation (STY)" "KIRREL1 p Y572" NA NA NA NA NA 63329 NA NA 89709 2847535 1426475 1165415 1887490 NA NA NA NA 53978 -"KIRREL1" "Y" "605" "Phosphorylation (STY)" "KIRREL1 p Y605" NA NA NA NA NA NA NA NA NA NA NA 513490 258070 296840 660475 436430 419135 60557 -"KIRREL1" "Y" "721" "Phosphorylation (STY)" "KIRREL1 p Y721" NA NA NA NA NA NA NA NA NA 2837700 804590 862715 486290 753805 1025600 591910 1116050 1109245 -"NECTIN4" "Y" "502" "Phosphorylation (STY)" "NECTIN4 p Y502" 6065900 4552200 3285450 4718450 4307350 4284350 6159300 7765700 4329850 NA NA NA NA NA NA NA NA NA -"NECTIN4" "Y" "445" "Phosphorylation (STY)" "NECTIN4 p Y445" 3741450 3501950 2965300 4541400 2300900 3862100 3388500 2987800 2242100 1215600 NA 1207900 NA NA NA 32989 66292 NA -"ARAP1" "Y" "504" "Phosphorylation (STY)" "ARAP1 p Y504" 1581550 1028160 47506 1228750 1420700 1655850 1666900 1745800 736348 NA NA NA NA NA NA NA NA NA -"DCBLD2" "Y" "750" "Phosphorylation (STY)" "DCBLD2 p Y750" 1733350 1879000 827890 1771500 3871750 3331900 1360415 2001750 1693965 1762000 NA 85754 452140 591480 1049600 2393375.5 1379400 939220 -"DCBLD2" "Y" "732" "Phosphorylation (STY)" "DCBLD2 p Y732" 507630 185600 335715.5 1014015 419120 1306150 410085 474975 113600 NA NA NA NA NA NA NA NA NA -"DCBLD2" "Y" "565" "Phosphorylation (STY)" "DCBLD2 p Y565" 364895 273435 249030 289480 292345 244500 NA 155030 267630 748720 479410 526965 943360 937155 692580 445865 880315 NA -"DCBLD2" "Y" "597" "Phosphorylation (STY)" "DCBLD2 p Y597" NA NA NA 461920 577690 958060 NA NA NA NA NA NA NA NA NA NA NA NA -"RBM14" "Y" "645" "Phosphorylation (STY)" "RBM14 p Y645" 721120 840485 656065 1178555 1135840 1349550 594310 779215 773225 NA NA NA NA NA NA NA NA NA -"SLC38A2" "Y" "41" "Phosphorylation (STY)" "SLC38A2 p Y41" NA 3797800 NA 3993700 5867650 NA NA 237870 2242500 403620 NA NA NA 2267200 NA 3186300 263790 NA -"MAGI1" "Y" "373" "Phosphorylation (STY)" "MAGI1 p Y373" 139675 176160 117399 149695 130485 149520 77199 91343 96555.5 377700 NA NA NA 1035000 NA 563130 14631 NA -"ERBIN" "Y" "1104" "Phosphorylation (STY)" "ERBIN p Y1104" 2375050 2870200 2404500 3500350 3411800 2982050 4100950 3919450 3845750 2158765 750760 611875 1142575 480065 1598400 2522100 2377500 1371165 -"LYSMD1" "Y" "83" "Phosphorylation (STY)" "LYSMD1 p Y83" NA NA NA NA NA 224720 203170 151900 NA NA NA NA NA NA NA NA NA NA -"CEP89" "Y" "157" "Phosphorylation (STY)" "CEP89 p Y157" 305865 303660 404290 430330 380800 209700 326960 340800 1362400 1235425 783205 983195 1226735 610940 1404045 1272405 1575870 1877200 -"CNN2" "Y" "184" "Phosphorylation (STY)" "CNN2 p Y184" NA NA NA 799240 1032000 987930 NA NA NA NA NA NA NA NA NA NA NA NA -"CNN2;CNN3" "Y" "12;10" "Phosphorylation (STY)" "CNN2 p Y12; CNN3 p Y10" NA NA 300050 NA 651440 833825 NA NA NA NA 386110 522760 138680 353375 294340 650670 1019800 306910 -"MAP3K14" "Y" "682" "Phosphorylation (STY)" "MAP3K14 p Y682" NA NA NA NA NA NA 413430 546765 NA 537850 NA NA 655810 205915 201820 113160 2124965 1595930 -"PKP4" "Y" "275" "Phosphorylation (STY)" "PKP4 p Y275" 547910 160050 240720 895090 719880 911195 1052350 631380 1003420 NA NA NA NA NA NA NA NA NA -"PKP4" "Y" "1094" "Phosphorylation (STY)" "PKP4 p Y1094" 1513800 74986 778215 1197100 NA 1275445 1600100 1832300 1198700 318133 66159 201060 126740 186200 285280 NA 135890 224410 -"PKP4" "Y" "1115" "Phosphorylation (STY)" "PKP4 p Y1115" 3833000 4417700 5385300 6002100 3451500 6906050 10427700 9218000 9457300 937220 NA NA 403970 NA NA NA 137570 175130 -"PKP4" "Y" "306" "Phosphorylation (STY)" "PKP4 p Y306" 1336405 526850 257330 1777400 962190 NA 2293850 3025700 3765700 NA NA NA NA NA NA NA NA NA -"PKP4" "Y" "415" "Phosphorylation (STY)" "PKP4 p Y415" 2634950 2972400 1046600 3278400 2848600 3159750 2661950 2672100 2252350 432340 240090 235514.5 283925 324550 292610 182328 159184.5 250540 -"PKP4" "Y" "443" "Phosphorylation (STY)" "PKP4 p Y443" 1903400 451160 793450 1068000 1337800 1479272 1013400 204400 NA 642040 330440 NA NA NA NA NA NA NA -"PKP4" "Y" "465" "Phosphorylation (STY)" "PKP4 p Y465" 2104550 2021200 1870400 2827850 3212800 3142600 5018400 5603550 4439800 NA NA 97228 122340 55799 173590 297200 153190 102390 -"PKP4" "Y" "1168" "Phosphorylation (STY)" "PKP4 p Y1168" 3664500 1576500 3375400 3371100 1951600 3683800 5544300 5605700 3964600 591310 944490 449100 973995 745835 1001455 917610 934695 893285 -"PKP4" "Y" "1172" "Phosphorylation (STY)" "PKP4 p Y1172" 524270 503330 421800 484200 586810 631245 767735 786695 434780 NA NA NA NA 5701.8 NA NA NA NA -"PKP4" "Y" "372" "Phosphorylation (STY)" "PKP4 p Y372" 3572700 3296850 1779000 1789350 2727100 3255850 3797200 4685100 6535800 203840 405715 218250 168130 172430 541985 NA 207270 712225 -"PKP4" "Y" "420" "Phosphorylation (STY)" "PKP4 p Y420" 4255800 3777250 1804215 4421800 3870800 4693050 6951100 9137350 5581950 77403.5 39438 146790 896680 NA 709495 403370 1042800 299550 -"PKP4" "Y" "421" "Phosphorylation (STY)" "PKP4 p Y421" 879980 NA NA NA NA 1518500 NA 3015200 NA NA NA NA NA NA NA NA NA NA -"PKP4" "Y" "425" "Phosphorylation (STY)" "PKP4 p Y425" NA 430770 NA NA NA 491445 NA 1371700 1059800 NA NA NA NA NA NA NA NA NA -"PKP4" "Y" "494" "Phosphorylation (STY)" "PKP4 p Y494" NA NA NA 2434700 703980 4113000 3886550 3750350 3922000 NA NA NA NA NA NA NA NA NA -"DOK1" "Y" "449" "Phosphorylation (STY)" "DOK1 p Y449" 624300 753760 580655 830550 1088635 1048270 538850 1125940 1235835 561090 390700 425805 474955 295029.5 496900 517595 598815 612815 -"PKP2" "Y" "217" "Phosphorylation (STY)" "PKP2 p Y217" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1839600 NA -"PKP2" "Y" "659" "Phosphorylation (STY)" "PKP2 p Y659" NA NA NA NA NA NA NA NA NA 1032795 515700 561275 NA NA NA 552260 122660 453970 -"NIPSNAP1" "Y" "148" "Phosphorylation (STY)" "NIPSNAP1 p Y148" NA 5152100 NA 1787950 NA 4695100 2693900 3100850 1628513 NA NA NA NA NA NA NA NA NA -"RBM4B;RBM4" "Y" "37;37" "Phosphorylation (STY)" "RBM4B p Y37; RBM4 p Y37" NA NA 123211 NA 1786070 1334620 1027825 1406465 NA NA NA NA NA NA NA NA NA NA -"PELO" "Y" "99" "Phosphorylation (STY)" "PELO p Y99" 296620 587125 1005200 500495 345450 755195 1164265 1052610 1113400 NA NA NA NA NA NA NA NA 453750 -"ATG101" "Y" "164" "Phosphorylation (STY)" "ATG101 p Y164" 322500 269260 79732 282680 322070 336490 447150 NA 162430 NA NA NA NA NA NA NA NA NA -"TUBGCP2" "Y" "83" "Phosphorylation (STY)" "TUBGCP2 p Y83" 1157200 960680 948265 808635 828720 1028300 630520 839460 1017650 13262 NA 11908 NA 14892 NA NA NA NA -"ESYT1" "Y" "822" "Phosphorylation (STY)" "ESYT1 p Y822" 9964250 8806350 7905800 8925700 7585700 10609200 7294150 8502000 6662800 3181300 3690200 3262205 3239850 2238350 2812500 1550015 2949450 3156300 -"ESYT1" "Y" "1009" "Phosphorylation (STY)" "ESYT1 p Y1009" 1667800 1382400 971635 NA NA 1360800 570380 159080 NA 188760 NA 102742.5 NA NA NA NA NA NA -"WDR18" "Y" "61" "Phosphorylation (STY)" "WDR18 p Y61" 369025 370775 336750 209240 410420 327110 262635 275600 274530 130136.5 149700.5 226050 178830 183173.5 219720 167745 161390 170295 -"NTMT1" "Y" "103" "Phosphorylation (STY)" "NTMT1 p Y103" 788600 1052860 669440 636420 495330 773285 581800 640220 701800 NA NA NA 331532.5 NA 177130 NA 399910 58574 -"ITPA" "Y" "113" "Phosphorylation (STY)" "ITPA p Y113" 7114850 7225550 6009450 4582950 6157900 6677900 2651600 3140550 2853150 NA NA NA NA NA NA NA NA NA -"UBXN6" "Y" "336" "Phosphorylation (STY)" "UBXN6 p Y336" 5398250 3473400 3323350 2784600 2817750 3444550 4695350 5258700 3546350 NA NA 107090 NA NA NA NA NA NA -"SPRY4" "Y" "52" "Phosphorylation (STY)" "SPRY4 p Y52" NA 1312700 1492300 NA 1126700 NA 808330 174220 1089915 NA 222010 633650 NA NA NA NA NA 147620 -"ARHGAP39" "Y" "448" "Phosphorylation (STY)" "ARHGAP39 p Y448" 116590 203190 135979.5 139775 60593 106615.5 181250 148460 192500 148977.5 169528.5 264630 NA NA NA 66294 NA 214330 -"SRCIN1" "Y" "283" "Phosphorylation (STY)" "SRCIN1 p Y283" 1470450 1195950 954810 1489550 1423000 1710350 2584250 2399400 2340350 135313 162960 230470 263905 456600 283940 398860 NA 178440 -"SRCIN1" "Y" "396" "Phosphorylation (STY)" "SRCIN1 p Y396" 1408000 1433300 1569800 1461950 1795200 NA 1822000 1444915 1421000 1740300 544320 685965 1215905 1277595 1282525 481365 361960 NA -"SRCIN1" "Y" "264" "Phosphorylation (STY)" "SRCIN1 p Y264" NA 429230 NA 868040 3297744 6751400 4505900 4206800 4611200 7451700 3538700 73413 3271700 1173116 3490900 NA NA 2853400 -"CYSTM1" "Y" "64" "Phosphorylation (STY)" "CYSTM1 p Y64" 317850 379880 217935 895055 298845 650855 NA NA NA 401700.5 NA NA NA 68374 62707 94850.5 193010 361870 -"HIPK3" "Y" "359" "Phosphorylation (STY)" "HIPK3 p Y359" 17698500 18355500 15674000 13136900 15026000 15251000 21962000 27823500 14795000 11778050 7673500 8075050 12653400 2712170 12197800 18419000 16460400 10507250 -"EPB41L1" "Y" "343" "Phosphorylation (STY)" "EPB41L1 p Y343" 249180 122420 199205 NA 222540 244030 204445 135170 82780 5263950 9141200 6936850 6918550 4137550 3407400 7761400 3387800 2276650 -"CDCP1" "Y" "806" "Phosphorylation (STY)" "CDCP1 p Y806" 622230 NA 766570 1128700 NA NA NA 1110600 761540 NA NA 1542305 4456850 2534200 4471200 234110 3717700 NA -"EPS8L2" "Y" "678" "Phosphorylation (STY)" "EPS8L2 p Y678" 1022420 1251345 1105655 1349800 1668050 1744800 1960950 1948100 1570100 NA 103090 238120 312710 NA 365770 228145 164130 181680 -"GAREM1" "Y" "52" "Phosphorylation (STY)" "GAREM1 p Y52" 252370 274850 144110 529860 346385 505135 583080 922880 654150 NA NA NA NA NA NA NA NA NA -"GAREM1" "Y" "701" "Phosphorylation (STY)" "GAREM1 p Y701" 324840 178340 NA 2096200 1028210 1858530 2678600 2453400 1789950 NA NA NA NA NA NA NA NA NA -"GAREM1" "Y" "453" "Phosphorylation (STY)" "GAREM1 p Y453" NA 2174650 NA 3143300 3018200 2974650 1928800 1349500 2363900 417740 NA NA NA 82498.5 NA 8597400 304370 NA -"GAREM1" "Y" "271" "Phosphorylation (STY)" "GAREM1 p Y271" 794460 846425 367740 2451600 2471200 3384100 5337900 4216800 4239850 NA NA NA NA NA NA NA NA NA -"PEAK1" "Y" "531" "Phosphorylation (STY)" "PEAK1 p Y531" NA NA NA NA NA NA NA NA NA 960160 589060 404025 455260 233518.5 334105 594245 495105 558825 -"PLEKHA5" "Y" "327" "Phosphorylation (STY)" "PLEKHA5 p Y327" 2155300 NA 2058800 2007900 2784800 2341450 5060850 5046400 4660900 NA NA NA NA NA NA NA NA NA -"PLEKHA5" "Y" "398" "Phosphorylation (STY)" "PLEKHA5 p Y398" 5894750 6170900 2906500 11638000 9706150 10057250 14450750 8966500 12180100 1371200 489470 500680 653265 441410 NA 944800 860230 1158400 -"PLEKHA5" "Y" "436" "Phosphorylation (STY)" "PLEKHA5 p Y436" 5405950 3623700 2438200 5781700 4867400 5176300 8809650 9438800 9421900 194308 93840 77497 87886 73952.5 NA 180475 263420 NA -"TNS1" "Y" "1404" "Phosphorylation (STY)" "TNS1 p Y1404" NA NA NA NA NA NA NA NA NA 744065 189707 106466 558325 80870 676870 249780 507920 96516 -"TNS1" "Y" "1254" "Phosphorylation (STY)" "TNS1 p Y1254" NA 258975 NA NA NA NA NA 71608 163100 2104600 3079200 4595500 2923700 1715400 2462600 1517855 636950 1239500 -"EML4" "Y" "226" "Phosphorylation (STY)" "EML4 p Y226" 1060575000 1240900000 1145825000 981875000 1355350000 1608850000 1015780000 991155000 890965000 495425 262355 131500 NA NA NA NA NA NA -"EML4" "Y" "247" "Phosphorylation (STY)" "EML4 p Y247" NA 470660 NA 1669000 2315950 2807850 1705900 1147200 439328.5 NA NA NA NA NA NA NA NA NA -"EML4" "Y" "305" "Phosphorylation (STY)" "EML4 p Y305" 782485 686850 220100 5431550 6918900 8226200 26155500 32437000 32985000 NA NA NA NA NA NA 507890 NA NA -"EML4" "Y" "265" "Phosphorylation (STY)" "EML4 p Y265" 1467750 1673600 1640250 7241605 17600500 17652000 18034500 19536500 15979500 NA NA NA NA NA NA NA NA NA -"EML4" "Y" "267" "Phosphorylation (STY)" "EML4 p Y267" 1916650 1810850 1378175 14199500 19687500 17816500 NA 121990 NA NA NA NA NA NA NA NA NA NA -"EML4" "Y" "453" "Phosphorylation (STY)" "EML4 p Y453" 896795 951840 515030 1585800 1680050 1947300 6127750 4855300 3970050 NA NA NA NA NA NA NA 173520 NA -"GPAM" "Y" "111" "Phosphorylation (STY)" "GPAM p Y111" NA NA 3251600 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"S100A14" "Y" "32" "Phosphorylation (STY)" "S100A14 p Y32" 978000 1966500 1532465 1391050 1596750 2998850 1350995 1299895 1118240 NA NA NA 427260 NA NA NA NA NA -"PTPRH" "Y" "1102" "Phosphorylation (STY)" "PTPRH p Y1102" NA NA NA 693645 1029900 1137350 NA NA 367990 NA 33481 NA NA 103700 62910 184440 72603 196950 -"MYO10" "Y" "1128" "Phosphorylation (STY)" "MYO10 p Y1128" 464380 216805 368690 435640 218890 163240 596165 214600 NA NA NA NA NA NA NA NA NA NA -"VTA1" "Y" "278" "Phosphorylation (STY)" "VTA1 p Y278" 10876000 8872400 8880150 7130050 7833150 9309550 6281450 7341900 5281200 102890 NA 30629 NA NA NA NA NA NA -"DCP1A" "Y" "64" "Phosphorylation (STY)" "DCP1A p Y64" 750960 NA 643685 525730 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -"SEMA4B" "Y" "782" "Phosphorylation (STY)" "SEMA4B p Y782" 1407300 1354000 914880 1601150 1665750 1918350 3297700 2272250 2355750 NA NA NA NA NA NA NA NA 174520 -"GPRC5C" "Y" "324" "Phosphorylation (STY)" "GPRC5C p Y324" 788920 1009105 771725 955070 723140 964190 761960 723865 680550 423675 317155 390235 258200 379050 314310 274730 385795 480240 -"GPRC5C" "Y" "387" "Phosphorylation (STY)" "GPRC5C p Y387" 828340 1059235 1029820 1006150 1256990 1085315 649670 892520 629330 NA NA 549640 NA 624045 NA NA NA 711320 -"NIT2" "Y" "49" "Phosphorylation (STY)" "NIT2 p Y49" 761605 692895 523760 NA 511110 485920 NA 428960 278030 115055 NA 65229 NA 27715 81756 NA 58956.5 42677 -"ASH1L" "Y" "1995" "Phosphorylation (STY)" "ASH1L p Y1995" NA 334540 NA 141690 NA NA NA 73213 NA 330910 NA 1049250 NA 607000 26709 NA NA 923120 -"ARHGAP35" "Y" "1105" "Phosphorylation (STY)" "ARHGAP35 p Y1105" 13757250 15090650 12295650 23983500 24541500 27116000 22065500 18103750 17803500 13572600 9790650 17870000 13184050 3995000 15060450 13639050 12093650 17826500 -"SPATS2L" "Y" "15" "Phosphorylation (STY)" "SPATS2L p Y15" NA 826470 1171295 3083100 3734400 3774700 3095000 3938650 3274600 360450 509360 440435 374460 231175 296980 1509400 835010 496250 -"PAG1" "Y" "227" "Phosphorylation (STY)" "PAG1 p Y227" 2833000 2580700 2089450 3524850 2685550 2284250 1836300 2085615 1471745 886180 413680 428450 439020 288320 524094 487655 217925 167200 -"PAG1" "Y" "417" "Phosphorylation (STY)" "PAG1 p Y417" 1686900 1793655 1440355 1419700 1096755 982705 1406010 1594480 2520000 NA NA NA NA NA NA NA NA NA -"PAG1" "Y" "359" "Phosphorylation (STY)" "PAG1 p Y359" 6451750 2584700 5443700 6062850 3801900 7137000 5618300 7052100 5400300 914510 1106000 1428400 1804000 NA 1216000 2347600 1025490 717490 -"PAG1" "Y" "317" "Phosphorylation (STY)" "PAG1 p Y317" NA 1807800 NA 2306600 1353600 NA 2382200 3046700 NA NA NA 687140 NA 620390 60985 NA 495720 NA -"MTMR10" "Y" "708" "Phosphorylation (STY)" "MTMR10 p Y708" 153207.5 132797 115802.5 149015 54534 112938 242335 246145 217605 112155.5 71841 92262.5 84894 56364 67274.5 57013.5 61476 90712 -"ABI2" "Y" "213" "Phosphorylation (STY)" "ABI2 p Y213" 276920 235400 956450 875045 2122800 3103600 NA NA NA NA 127770 330050 NA NA NA NA NA NA -"ACTR10" "Y" "4" "Phosphorylation (STY)" "ACTR10 p Y4" 247455 293985 208795 400295 NA NA NA NA 371840 NA NA NA NA NA NA NA NA NA -"GPRC5B" "Y" "376" "Phosphorylation (STY)" "GPRC5B p Y376" NA NA NA NA NA NA NA NA NA 563735 283700 35982 354475 210920 317250 222245 NA 310460 -"ITSN2" "Y" "968" "Phosphorylation (STY)" "ITSN2 p Y968" 5809200 8296800 9919650 25334000 32573000 39657000 18524500 27583000 15236400 6480000 1241800 1989400 9212300 2746350 3334700 11121000 1613500 4827150 -"ITSN2" "Y" "553" "Phosphorylation (STY)" "ITSN2 p Y553" 2115600 3012500 48199 3796200 3819250 4852700 3409000 3614350 3542700 1259550 420070 589380 817220 603880 953070 1805000 1513000 NA -"CGN" "Y" "45" "Phosphorylation (STY)" "CGN p Y45" 4879650 5282200 4697300 10431950 11304500 11855900 6937600 6326450 5589500 121580 254525 219265 295945 233560 271880 369155 534890 292555 -"CGN" "Y" "313" "Phosphorylation (STY)" "CGN p Y313" NA NA NA NA 1004400 NA 1120850 1068220 996755 NA NA NA NA NA NA NA 27057 NA -"SUCLA2" "Y" "84" "Phosphorylation (STY)" "SUCLA2 p Y84" 7760250 13192000 9646200 5619550 NA 7635850 7092950 7580650 6335450 NA NA NA NA NA NA NA NA NA -"TJP2" "Y" "261" "Phosphorylation (STY)" "TJP2 p Y261" 910620 1011920 702570 NA 1365350 1417450 1397845 1249605 1020700 797260 514110 879165 722840 877095 816535 898040 630560 638320 -"TJP2" "Y" "265" "Phosphorylation (STY)" "TJP2 p Y265" NA 344940 166830 151870 NA NA NA NA 124590 413845 439110 606985 349575 389000 491950 494400 722320 782275 -"TJP2" "Y" "1178" "Phosphorylation (STY)" "TJP2 p Y1178" 777340 1233480 566430 1032215 1358750 1125575 1681750 1716950 1475600 581290 406850 499575 432630 530555 763475 653605 588995 575680 -"TJP2" "Y" "1179" "Phosphorylation (STY)" "TJP2 p Y1179" NA NA NA 1547900 NA 2130500 NA NA NA NA NA NA NA NA NA NA NA NA -"TJP2" "Y" "1118" "Phosphorylation (STY)" "TJP2 p Y1118" 16065500 28502000 25516000 39619500 42220000 61688000 28336500 36138500 30505000 5160350 NA 4141850 6198650 3191900 3755150 11056150 6240250 6581600 -"TJP2" "Y" "1007" "Phosphorylation (STY)" "TJP2 p Y1007" 1367905 1403830 1248100 2380450 1964650 925220 889190 2039905 1982150 128570 634535 872945 146590 444325 607980 783425 822800 965330 -"BAIAP2L1" "Y" "274" "Phosphorylation (STY)" "BAIAP2L1 p Y274" 9251800 7553450 7582400 11493200 8910000 11592200 11865700 10413550 11693750 4938750 4802900 4804300 2174550 3937900 2680950 3486920 3566150 3184500 -"ATP6V1H" "Y" "388" "Phosphorylation (STY)" "ATP6V1H p Y388" 1245850 1192230 938930 436740 357835 893115 1081860 1108895 NA NA NA NA NA NA NA NA NA NA -"ERRFI1" "Y" "458" "Phosphorylation (STY)" "ERRFI1 p Y458" NA NA NA 593045 393560 487015 598050 727560 562650 609840 367418 566845 106626 70719.5 151615 705900 305550 604975 -"ERRFI1" "Y" "394" "Phosphorylation (STY)" "ERRFI1 p Y394" 594550 499545 541495 135150 1338775 2285500 581815 1122215 284830 23121250 8691350 7416200 259338 214989.5 303014 45125000 9523250 6084850 -"DBNL" "Y" "140" "Phosphorylation (STY)" "DBNL p Y140" 1051085 1284610 966030 2053800 1802700 1808750 2140500 2164600 2500250 NA NA NA NA NA NA NA NA NA -"DBNL" "Y" "162" "Phosphorylation (STY)" "DBNL p Y162" 1129690 727120 738970 1198500 1757100 1805870 717500 1e+06 752150 356369 233710 403650 164364.5 226740 NA 430313.5 191199 220574 -"DCTN4" "Y" "173" "Phosphorylation (STY)" "DCTN4 p Y173" NA NA NA 852260 740370 368226 NA NA NA NA NA NA NA NA NA NA NA NA -"NUDT5" "Y" "74" "Phosphorylation (STY)" "NUDT5 p Y74" 421070 674500 485300 376975 350320 430225 488320 757210 668800 NA NA NA NA 21249 73365 NA 30206 8905 -"VAV3" "Y" "217" "Phosphorylation (STY)" "VAV3 p Y217" NA 288600 NA 209255 151940 227990 110690 140120 28926 NA NA NA NA NA NA NA NA NA -"CDV3" "Y" "190" "Phosphorylation (STY)" "CDV3 p Y190" NA NA 3617200 2624700 6288600 NA NA NA 3112000 4126200 NA NA NA NA 3195400 NA NA 3227500 -"PLEKHG1" "Y" "1042" "Phosphorylation (STY)" "PLEKHG1 p Y1042" 174865 202210 195645 78430 62914 62867 70421 64714 70132 31373.5 NA 15281 NA NA 27891 NA NA NA -"ALK" "Y" "1584" "Phosphorylation (STY)" "ALK p Y1584" 216055 208810 216370 1509800 NA NA 2170500 NA 141960 NA NA NA NA NA NA NA NA NA -"ALK" "Y" "1586" "Phosphorylation (STY)" "ALK p Y1586" 141475 156445 143020 NA 2241700 2032250 1506600 NA NA NA NA NA NA NA NA NA NA NA -"ALK" "Y" "1078" "Phosphorylation (STY)" "ALK p Y1078" 1728150 1179300 NA 5063350 6702450 8212550 4999250 4650850 5915150 NA NA NA NA NA NA NA NA NA -"ALK" "Y" "1359" "Phosphorylation (STY)" "ALK p Y1359" 1324660 2004500 1333680 2374700 3480300 3586900 7501900 8539700 10746000 NA NA NA NA NA NA NA NA NA -"ALK" "Y" "1507" "Phosphorylation (STY)" "ALK p Y1507" 523125 19357500 19197500 20279655 74157000 44336500 30431000 29291000 20914000 NA NA NA NA NA NA NA NA NA -"ALK" "Y" "1096" "Phosphorylation (STY)" "ALK p Y1096" NA 3725630 4279800 19327500 25686000 27429500 28415000 27146000 27791500 NA NA NA NA NA NA NA NA NA -"DAPP1" "Y" "139" "Phosphorylation (STY)" "DAPP1 p Y139" NA NA NA NA NA NA NA NA 174220 770760 NA 1727500 NA NA 2242535 2329825 909800 2864710 -"ANKRD26" "Y" "296" "Phosphorylation (STY)" "ANKRD26 p Y296" NA NA NA NA NA NA NA 58682 NA 1292200 371320 394770 860470 926225 778275 663295 1102815 1277780 -"SHANK2" "Y" "610" "Phosphorylation (STY)" "SHANK2 p Y610" 384795 420615 345600 230610 407070 343910 NA 559415 411030 5798200 1967800 4684400 2378095 2735200 4074450 4509000 2324750 5053600 -"SHANK2" "Y" "538" "Phosphorylation (STY)" "SHANK2 p Y538" 2908600 2973100 2751700 2256750 1423350 2279160 3384750 5429700 4225400 23468050 13977800 26861000 22793000 11311454.5 24142050 9068900 22149450 17669650 -"SLC7A11" "Y" "15" "Phosphorylation (STY)" "SLC7A11 p Y15" 2846750 2942400 2312650 4434950 3533200 4496600 NA NA NA 560085 227000 571525 580720 453450 637490 588705 156975.5 415650 -"ICK" "Y" "159" "Phosphorylation (STY)" "ICK p Y159" 1796850 3578900 1861560 3158450 5570100 4166150 3991900 3885100 2498725 625607.5 NA 476545 607045 544061 1647920 761470 169960 237760 -"GAB2" "Y" "266" "Phosphorylation (STY)" "GAB2 p Y266" 200240 NA NA 925795 1125800 1002400 1236615 1646950 1527800 589620 NA NA 264140 344090 233880 NA 324075 266040 -"GAB2" "Y" "293" "Phosphorylation (STY)" "GAB2 p Y293" 115647.5 215380 191720 446400 795340 860365 298680 360090 324540 482761 241359.5 208235 87611.5 90930.5 75139 112559.5 125535.5 198980 -"GAB2" "Y" "614" "Phosphorylation (STY)" "GAB2 p Y614" 322660 730440 95432 NA 1664500 NA 1034000 NA 1848800 NA 109020 386370 NA NA NA 188990 111800 156840 -"PIN4" "Y" "122" "Phosphorylation (STY)" "PIN4 p Y122" NA NA NA NA NA NA 176080 195015 173055 NA NA NA NA NA NA NA NA NA -"PLEKHA6" "Y" "404" "Phosphorylation (STY)" "PLEKHA6 p Y404" 1836050 1649150 884960 2266600 2277350 2852000 5847200 3862300 4909100 176950 NA NA NA NA NA NA NA NA -"PLEKHA6" "Y" "492" "Phosphorylation (STY)" "PLEKHA6 p Y492" 991450 3373100 4637750 236090 3798600 4629900 3166255 5154300 2585200 1525210 966580 781512 389380 104350 106835 645610 107630 1007000 -"PIKFYVE" "Y" "1041" "Phosphorylation (STY)" "PIKFYVE p Y1041" NA 1685900 847750 733055 557915 843870 985345 804295 716215 6092750 3723740 NA 173750 NA NA NA NA NA -"GIT1" "Y" "545" "Phosphorylation (STY)" "GIT1 p Y545" 132180 529290 315685 869470 NA 452941.5 842510 370172 394960 1353000 NA 932430 1502700 72687 NA 71459.5 120370 1326000 -"EXOSC1" "Y" "119" "Phosphorylation (STY)" "EXOSC1 p Y119" NA NA NA NA 861750 892830 605870 584070 601140 232230 262590 370760 NA NA NA 410340 NA NA -"SF3B6" "Y" "86" "Phosphorylation (STY)" "SF3B6 p Y86" NA NA NA 240745 NA 254120 213460 207420 139635 NA NA NA NA NA NA NA NA NA -"PKP3" "Y" "176" "Phosphorylation (STY)" "PKP3 p Y176" 2999200 4237400 2686600 5595700 5982550 6044150 6134900 7433300 7890050 NA 1038800 NA NA NA NA NA NA NA -"PKP3" "Y" "84" "Phosphorylation (STY)" "PKP3 p Y84" 3583850 2752200 1865000 6842900 NA 4095700 8021900 8029500 8047150 NA NA NA NA NA 2980000 NA 3555000 NA -"PKP3" "Y" "390" "Phosphorylation (STY)" "PKP3 p Y390" 685550 501270 800690 1052200 670295 1106545 724695 790340 538374.5 1355000 NA 1247700 344850 863500 1096000 1160300 629140 1804500 -"PKP3" "Y" "195" "Phosphorylation (STY)" "PKP3 p Y195" 1450500 1139800 NA 93698 1384150 NA 1351700 814670 1036200 538480 208980 384440 331100 259270 743870 490170 269860 NA -"TLN1" "Y" "70" "Phosphorylation (STY)" "TLN1 p Y70" 2526400 2963900 2125500 2241100 1852300 2304450 2526500 2231450 2062400 4010500 1462170 642020 2400450 418730 1352100 4306500 2875700 1063330 -"IRS2" "Y" "823" "Phosphorylation (STY)" "IRS2 p Y823" NA 667290 264400 502985 568520 789390 NA NA NA NA NA NA 641880 1402000 605415.5 38526 487250 NA -"IRS2" "Y" "742" "Phosphorylation (STY)" "IRS2 p Y742" NA NA 3601900 1657300 NA NA 4596600 2679600 3731000 NA NA NA NA NA 418080 NA NA 508760 -"IRS2" "Y" "542" "Phosphorylation (STY)" "IRS2 p Y542" NA 84652 NA NA NA NA NA 465250 512180 225180 NA NA 3369900 4171700 3712700 306630 NA 127540 -"IRS2" "Y" "75" "Phosphorylation (STY)" "IRS2 p Y75" 3687150 6351550 6037050 7005200 8486050 9668650 4755600 5752250 4832050 NA NA NA NA NA NA NA NA NA -"IRS2" "Y" "803" "Phosphorylation (STY)" "IRS2 p Y803" 120790.5 82005 NA 207589 620700 243200 52879 621250 85491.5 311390 NA NA NA NA 120560 NA 126000 43973 -"IRS2" "Y" "675" "Phosphorylation (STY)" "IRS2 p Y675" 898815 1151295 902890 1105450 1373150 1224505 742245 1082845 1032490 84975 458670 120420 3057200 1715205 2628300 309905 273400 536370 -"IRS2" "Y" "576" "Phosphorylation (STY)" "IRS2 p Y576" 441250 323400 173240 1940600 2727200 3429800 2265400 2186950 1622250 NA NA NA NA NA NA NA 55880 99252 -"IRS2" "Y" "632" "Phosphorylation (STY)" "IRS2 p Y632" NA NA NA 957750 NA NA NA 1877400 NA NA NA NA NA NA NA NA NA NA -"IRS2" "Y" "111" "Phosphorylation (STY)" "IRS2 p Y111" 1665600 1884650 1990150 3748750 4573100 5848500 2015600 2141800 NA NA NA NA NA NA NA NA NA NA -"PRRC2C" "Y" "1218" "Phosphorylation (STY)" "PRRC2C p Y1218" 1124460 1860250 1589950 1820550 1697600 2268650 1068710 1049830 723090 1437100 1574715 2248650 1265305 1503750 1790000 476820 225312.5 NA -"CD2AP" "Y" "361" "Phosphorylation (STY)" "CD2AP p Y361" 133890 NA 253740 608190 355743.5 964055 288440 339955 183487 NA NA 464920 79005 NA NA 190010 1366600 992190 -"FLVCR1" "Y" "22" "Phosphorylation (STY)" "FLVCR1 p Y22" 455830 677205 481910 868440 643210 729555 546430 605535 517760 1019190 634445 782465 1100700 793465 1075740 711875 742680 983665 -"F11R" "Y" "280" "Phosphorylation (STY)" "F11R p Y280" 5112550 6079900 5210550 9260950 8827300 7041075 7666200 7362400 6233350 4280050 1581555 1008285 3641400 303980 2260755 3979150 3362360 3233000 -"DDX49" "Y" "223" "Phosphorylation (STY)" "DDX49 p Y223" NA NA 24939 NA NA NA NA 30427 NA 558280 406945 569160 380580 503335 522410 355460 728870 787600 From 1bfad6e6e9ecb6c542a9e5dfff8d22cb1707ecd5 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 14:36:35 -0600 Subject: [PATCH 07/18] update description fields --- DESCRIPTION | 27 ++++++++++++++++----------- 1 file changed, 16 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index e7bfe5d8..61b3e250 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,15 +1,22 @@ Package: PTMsToPathways -Title: Filtered CoCluster Correlation Network Guide +Title: Post-Translational Modification Network and Pathway Analysis Version: 0.99.0 Authors@R: c( - person("Mark", "Grimes", email = "first.last@example.com", role = c("aut", "cre")), - person("Mikhail", "Ukrainetz", email = "first.last@example.com", role = c("aut")), - person("Grant", "Smith", email = "first.last@example.com", role = c("aut")), - person("Madison", "Moffett", email = "first.last@example.com", role = c("aut")), - person("Nagashree", "Avabhrath", email = "first.last@example.com", role = c("aut")), - person("Lucia", "Williams", email = "first.last@example.com", role = c("aut")) + person("Mark", "Grimes", role = c("aut"), comment=c(ORCID = "0000-0003-2673-5892")), + person("Mikhail", "Ukrainetz", role = c("aut")), + person("Grant", "Smith", role = c("aut")), + person("Madison", "Moffett", role = c("aut")), + person("Nagashree", "Avabhrath", role = c("aut")), + person("Lucia", "Williams", email = "lucia.williams@umt.edu", role = c("aut", "cre"), comment=c(ORCID = "0000-0003-3785-0247")) ) -Description: A collection of functions in order to process mass spectrometry data of post-translational modifications into possible pathways. +Description: A collection of functions to integrate PTM proteomic data with +protein-protein interactions and cell signaling pathways. +These functions can be used to cluster PTMs to reveal patterns +in their expression under different experimental conditions. These clustering +patterns can then used to filter protein-protein interactions from external PPI +databases and pathway-pathway interactions. The resulting networks are navigable data structures that reveal +data-supported interactions among both individual proteins and groups of +proteins representing well-defined cell signaling pathways. License: GPL (>= 3) Encoding: UTF-8 Roxygen: list(markdown = TRUE) @@ -29,7 +36,6 @@ Imports: ggplot2, rlang Suggests: - BiocManager, knitr, rmarkdown, testthat (>= 3.0.0) @@ -37,10 +43,9 @@ VignetteBuilder: knitr Depends: R (>= 4.5.0) -URL: https://um-applied-algorithms-lab.github.io/PTMsToPathways/ +URL: https://um-applied-algorithms-lab.github.io/PTMsToPathways/, https://github.com/UM-Applied-Algorithms-Lab/PTMsToPathways BugReports: https://github.com/UM-Applied-Algorithms-Lab/PTMsToPathways/issues/new LazyData: true LazyDataCompression: xz Config/testthat/edition: 3 -Additional_repositories: https://bioconductor.org/packages/3.21/bioc biocViews: Software, Proteomics, PostTranslationalModifications, Pathways, Network From 558768c4461f96fee72dd50b1ecd1719349feb4a Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 14:59:21 -0600 Subject: [PATCH 08/18] formatting fixes --- DESCRIPTION | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 61b3e250..d841d82e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -10,13 +10,14 @@ Authors@R: c( person("Lucia", "Williams", email = "lucia.williams@umt.edu", role = c("aut", "cre"), comment=c(ORCID = "0000-0003-3785-0247")) ) Description: A collection of functions to integrate PTM proteomic data with -protein-protein interactions and cell signaling pathways. -These functions can be used to cluster PTMs to reveal patterns -in their expression under different experimental conditions. These clustering -patterns can then used to filter protein-protein interactions from external PPI -databases and pathway-pathway interactions. The resulting networks are navigable data structures that reveal -data-supported interactions among both individual proteins and groups of -proteins representing well-defined cell signaling pathways. + protein-protein interactions and cell signaling pathways. + These functions can be used to cluster PTMs to reveal patterns + in their expression under different experimental conditions. These clustering + patterns can then used to filter protein-protein interactions from external PPI + databases and pathway-pathway interactions. The resulting networks are + navigable data structures that reveal data-supported interactions among both + individual proteins and groups of proteins representing well-defined cell + signaling pathways. License: GPL (>= 3) Encoding: UTF-8 Roxygen: list(markdown = TRUE) From 5dbea10237f8b651e9ac74fbbc4450ed92b7e62c Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 14:59:54 -0600 Subject: [PATCH 09/18] use pkg::fun instead of import from --- NAMESPACE | 3 --- R/BRCAHelpers.R | 11 ++++------- 2 files changed, 4 insertions(+), 10 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index 318aedec..c1ff1fe6 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -40,7 +40,4 @@ export(setNodeColorToRowz) export(setNodeMapping) export(setNodeSizeColorIndependently) export(strip.cy.goo) -importFrom(gplots,heatmap.2) -importFrom(grDevices,colorRampPalette) -importFrom(grDevices,hcl) importFrom(rlang,.data) diff --git a/R/BRCAHelpers.R b/R/BRCAHelpers.R index 5c5e5c2d..c6049197 100644 --- a/R/BRCAHelpers.R +++ b/R/BRCAHelpers.R @@ -59,9 +59,6 @@ #' ) #' } #' -#' @importFrom gplots heatmap.2 -#' @importFrom grDevices hcl colorRampPalette -#' graph.ptm.by.cluster <- function( ptmtable, common.clusters, @@ -174,8 +171,8 @@ graph.ptm.by.cluster <- function( ## image() requires: nrow(z) == length(x)-1, ncol(z) == length(y)-1 write_heat_key <- function(filename, zlim = 3) { n <- 256L # number of colour cells - cols <- colorRampPalette(c("#3333FF","#E6E6E6","#FFFF00"), - space = "rgb", interpolate = "linear")(n) + cols <- grDevices::colorRampPalette(c("#3333FF", "#E6E6E6", "#FFFF00"), + space = "rgb", interpolate = "linear")(n) # breakpoints: length n+1 so the z matrix is (1 x n) brks <- seq(-zlim, zlim, length.out = n + 1L) z <- matrix(seq_len(n), nrow = 1L, ncol = n) # 1 x n @@ -240,8 +237,8 @@ graph.ptm.by.cluster <- function( # ---- colour setup -------------------------------------------------- - heatcols <- colorRampPalette(c("#3333FF","#E6E6E6","#FFFF00"), - space="rgb", interpolate="linear")(255) + heatcols <- grDevices::colorRampPalette(c("#3333FF", "#E6E6E6", "#FFFF00"), + space = "rgb", interpolate = "linear")(255) breaks <- seq(-zlim, zlim, length.out = 256) cluster.palette <- make_cluster_colors(length(ordered.blocks)) From e3b360be940caa4798873aa778ac70f2efd137ab Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 15:01:56 -0600 Subject: [PATCH 10/18] update package description --- R/PTMsToPathways-package.R | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/R/PTMsToPathways-package.R b/R/PTMsToPathways-package.R index babab066..4d040fd1 100644 --- a/R/PTMsToPathways-package.R +++ b/R/PTMsToPathways-package.R @@ -11,11 +11,9 @@ #' [BuildClusterFilteredNetwork()], [BuildPathwayCrosstalkNetwork()], and the #' Cytoscape helpers in [GraphCfn()] and related functions. #' -#' Example data objects are documented in [data_documentation.R]. +#' The package comes with many example datasets that can be seen in the vignettes. #' -#' @docType package #' @name PTMsToPathways -#' @aliases PTMsToPathways-package #' @keywords package -#' @seealso [browseVignettes("PTMsToPathways")] -NULL \ No newline at end of file +#' @seealso [utils::browseVignettes()] +"_PACKAGE" \ No newline at end of file From f9f742d6178db0259d1ce71afa290e354032063e Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 15:03:07 -0600 Subject: [PATCH 11/18] ignore .Rcheck dir --- .gitignore | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitignore b/.gitignore index 58d9853f..b14e06c4 100644 --- a/.gitignore +++ b/.gitignore @@ -16,3 +16,5 @@ vignettes/plots/ docs/ /Meta/ inst/doc + +*.Rcheck \ No newline at end of file From 44c6f8bf7bca6ab66290e91897e979eb2fab7961 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 15:03:17 -0600 Subject: [PATCH 12/18] roxygen output --- man/PTMsToPathways.Rd | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 man/PTMsToPathways.Rd diff --git a/man/PTMsToPathways.Rd b/man/PTMsToPathways.Rd new file mode 100644 index 00000000..ffe68a21 --- /dev/null +++ b/man/PTMsToPathways.Rd @@ -0,0 +1,41 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/PTMsToPathways-package.R +\docType{package} +\name{PTMsToPathways} +\alias{PTMsToPathways-package} +\alias{PTMsToPathways} +\title{PTMsToPathways: Filtered CoCluster Correlation Network Guide} +\description{ +PTMsToPathways provides tools for turning mass spectrometry data on +post-translational modifications into clustered networks, co-cluster +correlation networks, and downstream pathway and Cytoscape-ready views. +The package includes example PTM tables, BRCA example networks, and helper +functions for building CCCNs, cluster-filtered PPIs, and pathway crosstalk +networks. +} +\details{ +Typical entry points are \code{\link[=MakeClusterList]{MakeClusterList()}}, \code{\link[=MakeCorrelationNetwork]{MakeCorrelationNetwork()}}, +\code{\link[=BuildClusterFilteredNetwork]{BuildClusterFilteredNetwork()}}, \code{\link[=BuildPathwayCrosstalkNetwork]{BuildPathwayCrosstalkNetwork()}}, and the +Cytoscape helpers in \code{\link[=GraphCfn]{GraphCfn()}} and related functions. + +Example data objects include \link{ex_tiny_ptm_table}, \link{ex_small_ptm_table}, +and \link{ex_pathways_list}. +} +\seealso{ +\code{\link[utils:browseVignettes]{utils::browseVignettes()}} +} +\author{ +\strong{Maintainer}: Lucia Williams \email{lucia.williams@umt.edu} (\href{https://orcid.org/0000-0003-3785-0247}{ORCID}) + +Authors: +\itemize{ + \item Lucia Williams \email{lucia.williams@umt.edu} (\href{https://orcid.org/0000-0003-3785-0247}{ORCID}) + \item Mark Grimes (\href{https://orcid.org/0000-0003-2673-5892}{ORCID}) + \item Mikhail Ukrainetz + \item Grant Smith + \item Madison Moffett + \item Nagashree Avabhrath +} + +} +\keyword{package} From 2e770ec00072e0bc43535dbbae05a54b9d73f982 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 15:18:28 -0600 Subject: [PATCH 13/18] add utf encoding --- vignettes/CytoscapeGraphing.Rmd | 1 + 1 file changed, 1 insertion(+) diff --git a/vignettes/CytoscapeGraphing.Rmd b/vignettes/CytoscapeGraphing.Rmd index 0f07a5b8..ab079bf1 100644 --- a/vignettes/CytoscapeGraphing.Rmd +++ b/vignettes/CytoscapeGraphing.Rmd @@ -19,6 +19,7 @@ vignette: > %\VignetteIndexEntry{Cytoscape Graphing} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} + %\VignetteEncoding{UTF-8} editor_options: markdown: wrap: 72 From 7e34006e0adfe0a229c876be0a40e5f4d62130b9 Mon Sep 17 00:00:00 2001 From: Lucy Date: Mon, 29 Jun 2026 15:40:04 -0600 Subject: [PATCH 14/18] rename vignette --- _pkgdown.yml | 4 ++-- data-raw/ex-creating-networks-data.R | 2 +- inst/scripts/README.md | 4 ++-- vignettes/BRCANetworks.Rmd | 6 +++--- vignettes/{CreatingNetworks.Rmd => GettingStarted.Rmd} | 4 ++-- vignettes/RawDataProcessing.Rmd | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-) rename vignettes/{CreatingNetworks.Rmd => GettingStarted.Rmd} (99%) diff --git a/_pkgdown.yml b/_pkgdown.yml index d2a54643..5bf45c96 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -16,7 +16,7 @@ navbar: - text: "Raw Data Processing" href: articles/RawDataProcessing.html - text: "Creating Networks" - href: articles/CreatingNetworks.html + href: articles/GettingStarted.html - text: "Cytoscape Graphing" href: articles/CytoscapeGraphing.html - text: "BRCA Networks" @@ -27,6 +27,6 @@ articles: navbar: ~ contents: - RawDataProcessing - - CreatingNetworks + - GettingStarted - CytoscapeGraphing - BRCANetworks diff --git a/data-raw/ex-creating-networks-data.R b/data-raw/ex-creating-networks-data.R index b38566f7..f1985203 100644 --- a/data-raw/ex-creating-networks-data.R +++ b/data-raw/ex-creating-networks-data.R @@ -1,4 +1,4 @@ -# create the full example data as in the vignette CreatingNetworks. +# create the full example data as in the getting started vignette/ # The randomness inherent in the clustering procedure, and the MakeClusterList parameters keep length # and toolong, make it so that the data generated here may be slightly different than the existing example # data, which would break tests. So we don't overwrite the existing data, but provide the code for reference. diff --git a/inst/scripts/README.md b/inst/scripts/README.md index eca58cbd..54a18156 100644 --- a/inst/scripts/README.md +++ b/inst/scripts/README.md @@ -10,7 +10,7 @@ prepared. - `data-raw/ex-pathways-list.R` reads the BioPlanet pathway table and writes `data/ex_pathways_list.rda`. - `data-raw/ex-creating-networks-data.R` derives the example clustering and - CCCN objects used in the CreatingNetworks vignette. + CCCN objects used in the Getting Started vignette. - `data-raw/full-PCN-edgelist.R` documents the larger example PCN workflow. - `data-raw/processed-brca.R` derives the BRCA example objects from the BRCA phosphoproteomics table and local STRING/GeneMANIA/BioPlanet inputs. @@ -18,7 +18,7 @@ prepared. ## Bundled extdata sources - `inst/extdata/AlldataPTMs.txt` is the larger PTM example used in the - CreatingNetworks vignette. The source URL is documented in the vignette and + Getting Started vignette. The source URL is documented in the vignette and points to the package repository copy of the file. - `inst/extdata/pathway.csv` is a BioPlanet pathway table used by `ReadBioplanetFile()`; the public source is diff --git a/vignettes/BRCANetworks.Rmd b/vignettes/BRCANetworks.Rmd index edc18f27..2a2ee028 100644 --- a/vignettes/BRCANetworks.Rmd +++ b/vignettes/BRCANetworks.Rmd @@ -129,7 +129,7 @@ head(ptmtable[, 1:5]) ### Create Clusters and Co-Cluster Correlation Networks (CCCNs) Next, we create clusters and networks from those clusters as in the -[Creating Networks vignette](CreatingNetworks.html). This takes about 10 +[Creating Networks vignette](GettingStarted.html). This takes about 10 minutes on a laptop, so we provide both the code and the pre-computed results for this step. To re-run the analysis, run, the following: @@ -240,7 +240,7 @@ eval_brca[1:10, ] For PPI edges, the code below demonstrates how to get the STRING-db and GeneMANIA edges from the static human PPI data downloaded as local files. [todo: instructions to download once these are available.] Alternatively, the PPI data -can be obtained from STRINGdb and GeneMANIA websites as demonstrated in the [Creating Networks vignette](CreatingNetworks.html). +can be obtained from STRINGdb and GeneMANIA websites as demonstrated in the [Creating Networks vignette](GettingStarted.html). ```{r eval = FALSE} string_db_filepath <- "your/filepath/here.tsv" @@ -291,7 +291,7 @@ genemania.edges <- BRCA_genemania.edges head(genemania.edges) ``` -Next, we retrieve kinase-substrate edges, then obain the cluster filtered network, retaining PPIs only for proteins whose PTMs co-cluster, as demonstrated in the [Creating Networks vignette](CreatingNetworks.html). +Next, we retrieve kinase-substrate edges, then obain the cluster filtered network, retaining PPIs only for proteins whose PTMs co-cluster, as demonstrated in the [Creating Networks vignette](GettingStarted.html). ```{r eval = TRUE} file_path <- system.file("extdata", "Kinase_Substrate_Dataset.txt", package = "PTMsToPathways") diff --git a/vignettes/CreatingNetworks.Rmd b/vignettes/GettingStarted.Rmd similarity index 99% rename from vignettes/CreatingNetworks.Rmd rename to vignettes/GettingStarted.Rmd index 97386dec..69ae59bd 100644 --- a/vignettes/CreatingNetworks.Rmd +++ b/vignettes/GettingStarted.Rmd @@ -1,5 +1,5 @@ --- -title: 'Using the P2P Package: A Step-by-Step Tutorial' +title: 'Getting Started with PTMsToPathways' author: Nagashree Avabhrath, Mikhail Ukrainetz, Madison Moffett, Grant Smith, Lucia Williams, Mark Grimes output: @@ -16,7 +16,7 @@ output: toc: true toc_depth: '4' vignette: > - %\VignetteIndexEntry{PTMsToPathways} + %\VignetteIndexEntry{Getting Started with PTMsToPathways} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} editor_options: diff --git a/vignettes/RawDataProcessing.Rmd b/vignettes/RawDataProcessing.Rmd index 3f7c3336..c185e0fc 100644 --- a/vignettes/RawDataProcessing.Rmd +++ b/vignettes/RawDataProcessing.Rmd @@ -265,7 +265,7 @@ Log base 2 transformation improves clustering. log2phosdata <- log2(phosdata.merged) ``` -The [Creating Networks vignette](vignettes/CreatingNetworks.html) show how to use the functions provided in PTMsToPathways to analyze +The [Creating Networks vignette](vignettes/GettingStarted.html) show how to use the functions provided in PTMsToPathways to analyze data stored in a variable called `ptmtable`. ```{r eval = FALSE} ptmtable <- log2phosdata From d6789144f88c63e0e4f2495159f06571da45da14 Mon Sep 17 00:00:00 2001 From: Lucy Date: Tue, 30 Jun 2026 11:32:40 -0600 Subject: [PATCH 15/18] add session info and other small changes --- vignettes/BRCANetworks.Rmd | 45 ++++++++++++++++++++++++-------------- 1 file changed, 28 insertions(+), 17 deletions(-) diff --git a/vignettes/BRCANetworks.Rmd b/vignettes/BRCANetworks.Rmd index 2a2ee028..8d18d4e9 100644 --- a/vignettes/BRCANetworks.Rmd +++ b/vignettes/BRCANetworks.Rmd @@ -156,7 +156,7 @@ adj.consensus.matrix <- clusterlist.data[[2]] ptm.correlation.matrix <- clusterlist.data[[3]] ``` -These are required for the next step. +These are required to create the PTM and Gene co-cluster correlation networks. ```{r eval = TRUE} CCCN.data <- MakeCorrelationNetwork(adj.consensus.matrix, @@ -238,9 +238,10 @@ eval_brca[1:10, ] ### Build Cluster Filtered Networks (CFNs) and Pathway Crosstalk Networks (PCNs) For PPI edges, the code below demonstrates how to get the STRING-db and -GeneMANIA edges from the static human PPI data downloaded as local files. [todo: instructions -to download once these are available.] Alternatively, the PPI data -can be obtained from STRINGdb and GeneMANIA websites as demonstrated in the [Creating Networks vignette](GettingStarted.html). +GeneMANIA edges from the static human PPI data downloaded as local files. These +files are available on [Zenodo](https://zenodo.org/records/20631767). +Alternatively, the PPI data +can be obtained from STRINGdb and GeneMANIA websites as demonstrated in the [getting started with P2P vignette](GettingStarted.html). ```{r eval = FALSE} string_db_filepath <- "your/filepath/here.tsv" @@ -271,7 +272,7 @@ head(stringdb.edges) The GeneMANIA human PPI edge file contains the following types of interactions: "Genetic Interactions", "Pathway", "Physical Interactions", and "Predicted." -We choose all but "Genetic Interactions" to include using gm.interaction.types in the following function. +We choose all but "Genetic Interactions" to include using the `gm.interaction.types` parameter in the following function. ```{r eval = FALSE} genemania_db_filepath <- "your/filepath/here.tsv" @@ -291,13 +292,17 @@ genemania.edges <- BRCA_genemania.edges head(genemania.edges) ``` -Next, we retrieve kinase-substrate edges, then obain the cluster filtered network, retaining PPIs only for proteins whose PTMs co-cluster, as demonstrated in the [Creating Networks vignette](GettingStarted.html). +Next, we retrieve kinase-substrate edges, then obain the cluster filtered +network, retaining PPIs only for proteins whose PTMs co-cluster, as demonstrated +in the [getting started vignette](GettingStarted.html). ```{r eval = TRUE} file_path <- system.file("extdata", "Kinase_Substrate_Dataset.txt", package = "PTMsToPathways") kinsub.edges <- GetKinsub.edges(file_path, gene.cccn.nodes) +``` -# Now we can build the CFN. +Now we can build the CFN. +```{r eval = TRUE} network.list <- BuildClusterFilteredNetwork(gene.cccn.edges, stringdb.edges, genemania.edges, @@ -350,7 +355,8 @@ dim(PD_module.df) # should be 1017 rows head(PD_module.df) ``` -We note that there are differences from the PTM table imported above. We will work with those sites that match between ptmtable and PD_module.df +We note that there are differences from the PTM table imported above. We will +work with those sites that match between `ptmtable` and `PD_module.df`. ```{r eval = TRUE} length(intersect(newphos$variable_sites_names, PD_module.df$variableSites)) # 530 @@ -413,10 +419,11 @@ length(mod63.clust.ptms) ``` P2P provides functions to prepare visualizations of these PTMs in -Cytoscape. This code graphs the CFN/CCCN from all these PTMs: +[Cytoscape](https://cytoscape.org/). First, we create a dataframe of +node information that can be used with `RCy3` functions to create a network in Cytoscape. ```{r eval = TRUE} - funckey <- function_key +funckey <- function_key cfn.cccn <- ptms_to_cfn(mod63.clust.ptms, cfn = cfn.merged, ptm.cccn.edges = ptm.cccn.edges, ptmtable = ptmtable, pepsep = ";") cfn_cccn.nodes <- make.cytoscape.node.file(cfn.cccn, funckey, ptmtable, include.gene.data = TRUE, @@ -424,7 +431,7 @@ cfn_cccn.nodes <- make.cytoscape.node.file(cfn.cccn, funckey, ptmtable, ptm.cccn.edges = ptm.cccn.edges) ``` -To graph in Cytoscape: +To graph in Cytoscape, use the P2P function `GraphCfn`: ```{r eval = FALSE} g1 <- GraphCfn(cfn.edges = cfn.cccn, cfn.nodes = cfn_cccn.nodes, @@ -459,13 +466,12 @@ cfn_cccn.nodes.cdksubs <- cfn_cccn.nodes[cfn_cccn.nodes$Gene.Name %in% cdk1.subs ``` Two ways to select for CDK1 substrates are presented. Method 1: Using -RCy3. +`RCy3`. ```{r eval = FALSE} -library(RCy3) -selectNodes(cfn_cccn.nodes.cdksubs$id, by = "id", preserve=FALSE) -selectEdgesConnectingSelectedNodes() -createSubnetwork(nodes = getSelectedNodes(), edges = getSelectedEdges(), nodes.by.col = "id", edges.by.col = "name") +RCy3::selectNodes(cfn_cccn.nodes.cdksubs$id, by = "id", preserve=FALSE) +Cy3::selectEdgesConnectingSelectedNodes() +RCy3::createSubnetwork(nodes = RCy3::getSelectedNodes(), edges = RCy3::getSelectedEdges(), nodes.by.col = "id", edges.by.col = "name") ``` Method 2: Using P2P functions. @@ -510,7 +516,6 @@ mutant); X21BR010 (PIK3CA missense mutant); and X05BR045 (TP53 nonsense and MLLT4 frameshift mutants). ```{r eval = FALSE} -library(RCy3) setNodeColorToRatios(plotcol="X03BR011") setNodeColorToRowz(plotcol="X03BR011") # This exaggerates the node size and shape somewhat. setNodeColorToRatios(plotcol="X21BR010") @@ -522,3 +527,9 @@ setNodeColorToRowz(plotcol="X05BR045") Note that different samples have dramatically different differences in PTMs that are up or down, which is reflected also in total in gene nodes. + +### Session Info + +```{r eval = TRUE} +sessionInfo() +``` \ No newline at end of file From e79ec0c815be31f9eb243bbaed88a4ba3ebadf75 Mon Sep 17 00:00:00 2001 From: Lucy Date: Tue, 30 Jun 2026 11:43:48 -0600 Subject: [PATCH 16/18] document --- man/PTMsToPathways.Rd | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/man/PTMsToPathways.Rd b/man/PTMsToPathways.Rd index ffe68a21..477e914c 100644 --- a/man/PTMsToPathways.Rd +++ b/man/PTMsToPathways.Rd @@ -18,8 +18,7 @@ Typical entry points are \code{\link[=MakeClusterList]{MakeClusterList()}}, \cod \code{\link[=BuildClusterFilteredNetwork]{BuildClusterFilteredNetwork()}}, \code{\link[=BuildPathwayCrosstalkNetwork]{BuildPathwayCrosstalkNetwork()}}, and the Cytoscape helpers in \code{\link[=GraphCfn]{GraphCfn()}} and related functions. -Example data objects include \link{ex_tiny_ptm_table}, \link{ex_small_ptm_table}, -and \link{ex_pathways_list}. +The package comes with many example datasets that can be seen in the vignettes. } \seealso{ \code{\link[utils:browseVignettes]{utils::browseVignettes()}} From 4e02eb1813a2fb9bc9000a551b59e21e6fa9c29b Mon Sep 17 00:00:00 2001 From: Lucy Date: Tue, 30 Jun 2026 11:44:00 -0600 Subject: [PATCH 17/18] small changes and session info --- vignettes/GettingStarted.Rmd | 48 ++++++++++-------------------------- 1 file changed, 13 insertions(+), 35 deletions(-) diff --git a/vignettes/GettingStarted.Rmd b/vignettes/GettingStarted.Rmd index 69ae59bd..6d1db47f 100644 --- a/vignettes/GettingStarted.Rmd +++ b/vignettes/GettingStarted.Rmd @@ -39,35 +39,16 @@ knitr::opts_chunk$set( ``` This tutorial is intended to be a step-by-step guide to walk users -through the process of using the P2P package. It includes descriptions +through the main functions of the P2P package. It includes descriptions of each function and must be run in order as subsequent steps require -the data produced in previous steps. Example code and example outputs as -well as estimated run-times are included with each description and are -based on a preliminary dataset of \~9000 PTMs and 69 experimental -conditions processed with a 12th Gen i7 processor and 16GB of RAM. +the data produced in previous steps. For large datasets, it may be useful to +save the output of each step to a file for later use. -**An important note:** The returned outputs from the functions are data -that may be saved in an RData object so that the user may reload the -data, which may take a while to generate, and pick up where they left -off later. See the bottom of this document for code to save your data -efficiently. +# Installation -# Installing the Package +Installation instructions for the P2P package can be found on the [main package page](https://ptmstopathways.umaal.org/index.html#installation). -You will need to install the devtools package, which can be installed -with: - -```{r eval = FALSE, echo = TRUE} -install.packages("devtools") -``` - -Next, install the package with: - -```{r eval = FALSE, echo = TRUE} -devtools::install_github("UM-Applied-Algorithms-Lab/PTMsToPathways") -``` - -And load the package: +Then load the package: ```{r eval = TRUE, echo = TRUE} library(PTMsToPathways) @@ -194,10 +175,6 @@ be NA. ptm.correlation.matrix[38:43, 1:2] ``` -#### Estimated run-time (for large dataset) - -\~60min - # Step 2: Make Co-Cluster Correlation Networks (PTM and Gene) The data generated in the previous step is next used to create a new @@ -244,10 +221,6 @@ save.image(file = "filepath/name.RData") # All objects in the environment are saved ``` -#### Estimated run-time (for large dataset) - -\~10min - # Step 3: Retrieve Database Edgefiles The third step of the P2P package is to gather data from multiple @@ -260,7 +233,7 @@ databases have different interfaces for downloading data, so we show how to retrieve data from each of them below. For this tutorial, we use the local STRING option so the vignette can -build offline. We also provide the option (using the switch `local = FALSAE`) to +build offline. We also provide the option (using the switch `local = FALSE`) to retrieve edges from STRINGdb online. ### 1. STRINGdb @@ -457,7 +430,6 @@ dat <- pathway.crosstalk.network[1:5,] knitr::kable(dat, align = 'l', digits = 2) ``` - To understand the edge weights calculations, let's consider a pair of pathways, `Axon Guidance` and `ERBB signaling pathway`. We'll look at the `PCNedgelist` dataframe this time. @@ -595,3 +567,9 @@ save.image function as shown below: save.image(file = "filepath/name.RData") # All objects in the environment are saved ``` + +### Session Info + +```{r eval = TRUE} +sessionInfo() +``` \ No newline at end of file From d25a8ddd01370ebdcbee5c31c3572e3168d34c7d Mon Sep 17 00:00:00 2001 From: Lucy Date: Tue, 30 Jun 2026 11:45:26 -0600 Subject: [PATCH 18/18] add session info --- vignettes/RawDataProcessing.Rmd | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/vignettes/RawDataProcessing.Rmd b/vignettes/RawDataProcessing.Rmd index c185e0fc..ae2d09dd 100644 --- a/vignettes/RawDataProcessing.Rmd +++ b/vignettes/RawDataProcessing.Rmd @@ -419,3 +419,9 @@ Finally, this dataframe could be used as the example `ptmtable` for the P2P func ```{r eval = FALSE} # ptmtable <- log2ptmdata ``` + +### Session info + +```{r eval = TRUE} +sessionInfo() +```