Merge pull request #5 from TRON-Bioinformatics/update-vafator-1.1.4

update vafator

Author: priesgo

modules/02_normalization.nf

@@ -34,7 +34,7 @@ process VT_DECOMPOSE_COMPLEX {
     memory params.memory
     tag "${name}"
 
-    conda (params.enable_conda ? "bioconda::vt=0.57721" : null)
+    conda (params.enable_conda ? "openssl=3.0.0 bioconda::vt=0.57721" : null)
 
     input:
     	tuple val(name), file(vcf)

modules/04_vafator.nf

@@ -13,7 +13,7 @@ process VAFATOR {
     tag "${patient_name}"
     publishDir "${params.output}/${patient_name}", mode: "copy"
 
-    conda (params.enable_conda ? "bioconda::vafator=1.1.2" : null)
+    conda (params.enable_conda ? "bioconda::vafator=1.1.4" : null)
 
     input:
     tuple val(patient_name), file(vcf), val(bams)
@@ -39,7 +39,7 @@ process MULTIALLELIC_FILTER {
     tag "${name}"
     publishDir "${params.output}/${name}", mode: "copy"
 
-    conda (params.enable_conda ? "bioconda::vafator=1.1.2" : null)
+    conda (params.enable_conda ? "bioconda::vafator=1.1.4" : null)
 
     input:
     tuple val(name), file(vcf)

nextflow.config

@@ -1,6 +1,6 @@
 /*
  * -------------------------------------------------
- *  TRON-Bioinformatics/tronflow-vcf-normalization Nextflow config file
+ *  TRON-Bioinformatics/tronflow-vcf-postprocessing Nextflow config file
  * -------------------------------------------------
  */
 
@@ -27,15 +27,15 @@ env {
 // Capture exit codes from upstream processes when piping
 process.shell = ['/bin/bash', '-euo', 'pipefail']
 
-VERSION = '2.1.1'
+VERSION = '2.1.2'
 
 cleanup=true
 
 manifest {
-  name = 'TRON-Bioinformatics/tronflow-vcf-normalization'
+  name = 'TRON-Bioinformatics/tronflow-vcf-postprocessing'
   author = 'Pablo Riesgo-Ferreiro'
-  homePage = 'https://github.com/TRON-Bioinformatics/tronflow-vcf-normalization'
-  description = 'vt variant normalization pipeline'
+  homePage = 'https://github.com/TRON-Bioinformatics/tronflow-vcf-postprocessing'
+  description = 'VCF postprocessing pipeline'
   mainScript = 'main.nf'
   nextflowVersion = '>=19.10.0'
   version = VERSION