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update vafator
1 parent 96c7aae commit 783b3ac

2 files changed

Lines changed: 7 additions & 7 deletions

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modules/04_vafator.nf

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ process VAFATOR {
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tag "${patient_name}"
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publishDir "${params.output}/${patient_name}", mode: "copy"
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conda (params.enable_conda ? "bioconda::vafator=1.1.2" : null)
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conda (params.enable_conda ? "bioconda::vafator=1.1.4" : null)
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input:
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tuple val(patient_name), file(vcf), val(bams)
@@ -39,7 +39,7 @@ process MULTIALLELIC_FILTER {
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tag "${name}"
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publishDir "${params.output}/${name}", mode: "copy"
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conda (params.enable_conda ? "bioconda::vafator=1.1.2" : null)
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conda (params.enable_conda ? "bioconda::vafator=1.1.4" : null)
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input:
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tuple val(name), file(vcf)

nextflow.config

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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/*
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* -------------------------------------------------
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* TRON-Bioinformatics/tronflow-vcf-normalization Nextflow config file
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* TRON-Bioinformatics/tronflow-vcf-postprocessing Nextflow config file
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* -------------------------------------------------
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*/
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@@ -27,15 +27,15 @@ env {
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// Capture exit codes from upstream processes when piping
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process.shell = ['/bin/bash', '-euo', 'pipefail']
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VERSION = '2.1.1'
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VERSION = '2.1.2'
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cleanup=true
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manifest {
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name = 'TRON-Bioinformatics/tronflow-vcf-normalization'
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name = 'TRON-Bioinformatics/tronflow-vcf-postprocessing'
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author = 'Pablo Riesgo-Ferreiro'
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homePage = 'https://github.com/TRON-Bioinformatics/tronflow-vcf-normalization'
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description = 'vt variant normalization pipeline'
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homePage = 'https://github.com/TRON-Bioinformatics/tronflow-vcf-postprocessing'
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description = 'VCF postprocessing pipeline'
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mainScript = 'main.nf'
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nextflowVersion = '>=19.10.0'
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version = VERSION

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