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downgrade openssl explicitly
1 parent ccdb0dc commit 0edeb6e

4 files changed

Lines changed: 5 additions & 5 deletions

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modules/01_filter.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@ process FILTER_VCF {
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memory params.memory
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tag "${name}"
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.14" : null)
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.15.1 openssl=1.0" : null)
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input:
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tuple val(name), file(vcf)

modules/02_normalization.nf

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Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@ process BCFTOOLS_NORM {
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memory params.memory
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tag "${name}"
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.14" : null)
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.15.1 openssl=1.0" : null)
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input:
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tuple val(name), file(vcf)
@@ -54,7 +54,7 @@ process REMOVE_DUPLICATES {
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tag "${name}"
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publishDir "${params.output}/${name}", mode: "copy"
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.14" : null)
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.15.1 openssl=1.0" : null)
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input:
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tuple val(name), file(vcf)

modules/03_summary.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@ process SUMMARY_VCF {
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tag "${name}"
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publishDir "${params.output}/${name}/metrics", mode: "copy"
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conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.14" : null)
12+
conda (params.enable_conda ? "conda-forge::libgcc-ng=9.4.0 bioconda::bcftools=1.15.1 openssl=1.0" : null)
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input:
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tuple val(name), file(vcf)

nextflow.config

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -27,7 +27,7 @@ env {
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// Capture exit codes from upstream processes when piping
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process.shell = ['/bin/bash', '-euo', 'pipefail']
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VERSION = '2.2.0'
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VERSION = '2.2.1'
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manifest {
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name = 'TRON-Bioinformatics/tronflow-vcf-postprocessing'

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