Issues

• Question regarding SAW analysis output

  STOmics/SAW#291 · Filter by author jp2626-park opened on Sep 29, 2026
  3

• Creation of custom reference genome

  STOmics/SAW#290 · Filter by author pravinvel98 opened on Sep 28, 2026
  1

• cannot find feature in the list from the differential gene expression analysis results using StereoMap 4.3

  STOmics/SAW#289 · Filter by author rosspdu opened on Sep 23, 2026
  2

• Are there any plant test data available for me to use for hands-on practice?

  STOmics/SAW#287 · Filter by author huhm123 opened on Sep 10, 2026
  1

• cannot find mask file for sample

  STOmics/SAW#286 · Filter by author zainabirfan912 opened on Sep 9, 2026
  1

• Using selection method (lasso/ or rectangle) with new version of Stereomap (V4.3.0)

  STOmics/SAW#285 · Filter by author rosspdu opened on Aug 27, 2026
  1

• Need clarification regarding Cellbin analysis

  STOmics/SAW#284 · Filter by author rosspdu opened on Aug 26, 2026
  3

• Need help understanding the columns in the analysis output "........find.marker.genes.csv"

  STOmics/SAW#283 · Filter by author rosspdu opened on Aug 19, 2026
  1

• Indicated unmapped reads parameter but couldn't find this in the output

  STOmics/SAW#282 · Filter by author rosspdu opened on Aug 19, 2026
  6

• SDAS cell annotation issues

  STOmics/SAW#280 · Filter by author Cloumate opened on Jul 22, 2026
  1

• Unclear CalledProcessError on alignment step when running SAW v8.2.2 count workflow

  STOmics/SAW#279 · Filter by author AlexAlphaOmega opened on Jun 17, 2026
  1

• SAW v8.2: saw convert gef2rds fails — how to convert GEF to H5AD using gene_name as row names?

  STOmics/SAW#278 · Filter by author AlexAlphaOmega opened on Jun 8, 2026
  1

• Exception: SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

  STOmics/SAW#277 · Filter by author bobonannan opened on May 21, 2026
  1

• Exception: SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

  STOmics/SAW#276 · Filter by author bobonannan opened on May 21, 2026
  3

• Poorly detected immune genes

  STOmics/SAW#275 · Filter by author sup27606 opened on May 7, 2026
  1

• SAW Count Cellcut Error Inquiry

  STOmics/SAW#274 · Filter by author adilysyn opened on May 3, 2026
  1

• Image_qc.py Warning - QC failed

  STOmics/SAW#269 · Filter by author parkjooyoung99 opened on Feb 17, 2026
  1

• Cell segmentation mask doesn't fit image

  STOmics/SAW#267 · Filter by author HarteNuss opened on Feb 13, 2026
  6

• lasso tool

  STOmics/SAW#266 · Filter by author adilysyn opened on Feb 11, 2026
  20

• Question about accessing raw test data via Raysync

  STOmics/SAW#265 · Filter by author bcctpn opened on Feb 10, 2026
  1

• Compare gene expression across two experiments

  STOmics/SAW#264 · Filter by author adilysyn opened on Jan 28, 2026
  7

• Integration + alignment of third-party cell segmentation masks

  STOmics/SAW#261 · Filter by author pool-es opened on Dec 17, 2025
  1

• Low MID counts

  STOmics/SAW#258 · Filter by author HarteNuss opened on Nov 25, 2025
  8

• UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa6 in position 4: invalid start byte

  STOmics/SAW#257 · Filter by author Cathaya-sasa opened on Nov 11, 2025
  3

• How does SAW decide to flip the image?

  STOmics/SAW#255 · Filter by author roanvanscheppingen opened on Oct 24, 2025
  1