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Fix PEtab v2 extension config model (#506) #3852

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Run time

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Job	Run time
build (macos-latest, 3.12)	2m 47s
build (windows-latest, 3.14)	2m 58s
build (ubuntu-latest, 3.14)	1m 54s
build (windows-latest, 3.12)	4m 54s
build (ubuntu-latest, 3.12)	4m 26s
build (macos-latest, 3.14)	2m 11s
	19m 10s